BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0231.0047.p (318 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KB09.1 B3KB09_9BACI Conserved hypothetical radical SAM protein 575 e-162 B1DL69.1 B1DL69_9BACL Conserved hypothetical radical SAM protein 567 e-160 C0ZBA6.1 C0ZBA6_BREBN Putative uncharacterized protein ytqA 508 e-142 Q9K7S5.1 Q9K7S5_BACHD BH3284 protein 488 e-136 A6CMD2.1 A6CMD2_9BACI YtqA 470 e-131 >B3KB09.1 B3KB09_9BACI Conserved hypothetical radical SAM protein Length = 317 Score = 575 bits (1483), Expect = e-162, Method: Compositional matrix adjust. Identities = 269/307 (87%), Positives = 282/307 (91%) Query: 9 SPLLWGDKRFHTWNYEMREHMDTKVFKVMLDAGFTCPNRDGSIAKGGCTFCSARGSGDFA 68 +P LWGDKRFHTWNYEMR KVFKVMLDAGFTCPNRDG+IAKGGCTFCSARGSGDFA Sbjct: 8 APTLWGDKRFHTWNYEMRGQFQEKVFKVMLDAGFTCPNRDGTIAKGGCTFCSARGSGDFA 67 Query: 69 GSRRDDLVTQFNNVRDRQHLKWPNAKYIGYFQAYTNTYAPVAELREYYEVILQQPGVVGL 128 G RRDDLVTQFN +RDRQH KWPNAKYIGYFQAYTNTYAPV ELREYYEVILQQPGVVGL Sbjct: 68 GRRRDDLVTQFNTIRDRQHQKWPNAKYIGYFQAYTNTYAPVEELREYYEVILQQPGVVGL 127 Query: 129 SIATRPDCLPDDVVEYLAELNQRTYLWVEMGLQTIHDSTSELINRAHDTQCYIDAVQKLR 188 SIATRPDCLPDDVVEYLAELN+RTYLWVEMGLQTIHDSTSELINRAHDT+CY++AV+KLR Sbjct: 128 SIATRPDCLPDDVVEYLAELNERTYLWVEMGLQTIHDSTSELINRAHDTECYLEAVEKLR 187 Query: 189 RHGIRVCTHIIHGLPQETHEMMLETVSAVANMDVQGIKIHLLHLMRKTPMVKQYEAGLLR 248 +H IRVCTHII+GLPQE H+MML T AV+ MDVQGIKIHLLHLMRKTPMVKQYEAGLLR Sbjct: 188 KHNIRVCTHIIYGLPQEDHDMMLATGRAVSKMDVQGIKIHLLHLMRKTPMVKQYEAGLLR 247 Query: 249 FLEQDEYVKLIADSLELLPPEMIVHRLTGDAPRDLLIGPLWSLKKWEVLNAIDDELIARD 308 FLEQDEY+ LI DSLE LPPEMIVHRLTGDAPRDLLIGP WSLKKWEVLN ID EL RD Sbjct: 248 FLEQDEYISLIVDSLEFLPPEMIVHRLTGDAPRDLLIGPTWSLKKWEVLNGIDAELKRRD 307 Query: 309 TWQGKYW 315 TWQGK W Sbjct: 308 TWQGKLW 314 >B1DL69.1 B1DL69_9BACL Conserved hypothetical radical SAM protein Length = 321 Score = 567 bits (1462), Expect = e-160, Method: Compositional matrix adjust. Identities = 264/314 (84%), Positives = 284/314 (90%) Query: 2 SNLLQTSSPLLWGDKRFHTWNYEMREHMDTKVFKVMLDAGFTCPNRDGSIAKGGCTFCSA 61 S L P+LWGDKRFHTWNYEMRE + KVFKV LDAGFTCPNRDGSIAKGGCTFCSA Sbjct: 5 STSLTPGQPMLWGDKRFHTWNYEMREQLGGKVFKVTLDAGFTCPNRDGSIAKGGCTFCSA 64 Query: 62 RGSGDFAGSRRDDLVTQFNNVRDRQHLKWPNAKYIGYFQAYTNTYAPVAELREYYEVILQ 121 RGSGDFAGSRRDDLVTQFN +RDRQH KWP A YIGYFQAYTNTYAPV ELREYYEVILQ Sbjct: 65 RGSGDFAGSRRDDLVTQFNKIRDRQHQKWPEANYIGYFQAYTNTYAPVEELREYYEVILQ 124 Query: 122 QPGVVGLSIATRPDCLPDDVVEYLAELNQRTYLWVEMGLQTIHDSTSELINRAHDTQCYI 181 QPGVVGLSIATRPDCLPDDVV+YLAELN+RTYLWVEMGLQTIH+STSELINRAHDT CY+ Sbjct: 125 QPGVVGLSIATRPDCLPDDVVDYLAELNERTYLWVEMGLQTIHESTSELINRAHDTACYL 184 Query: 182 DAVQKLRRHGIRVCTHIIHGLPQETHEMMLETVSAVANMDVQGIKIHLLHLMRKTPMVKQ 241 DAV++LR GIRVCTH+I+GLPQE+H MMLET AVA MDVQGIKIHLLHLMRKTPMVKQ Sbjct: 185 DAVRRLRERGIRVCTHVIYGLPQESHAMMLETGRAVAEMDVQGIKIHLLHLMRKTPMVKQ 244 Query: 242 YEAGLLRFLEQDEYVKLIADSLELLPPEMIVHRLTGDAPRDLLIGPLWSLKKWEVLNAID 301 YEAGLLRFLE DEYVKLI D+LE LPPEMI+HRLTGDAP++LLIGP+WS++KW VLNAID Sbjct: 245 YEAGLLRFLELDEYVKLIVDTLEFLPPEMIIHRLTGDAPKELLIGPMWSMQKWVVLNAID 304 Query: 302 DELIARDTWQGKYW 315 EL R+TWQGK W Sbjct: 305 AELKRRNTWQGKLW 318 >C0ZBA6.1 C0ZBA6_BREBN Putative uncharacterized protein ytqA Length = 322 Score = 508 bits (1307), Expect = e-142, Method: Compositional matrix adjust. Identities = 230/312 (73%), Positives = 270/312 (86%) Query: 2 SNLLQTSSPLLWGDKRFHTWNYEMREHMDTKVFKVMLDAGFTCPNRDGSIAKGGCTFCSA 61 +++ PLLWGDKR+HTWNY +R K+FKV LD GF+CPNRDG +A GGCTFCSA Sbjct: 5 TDIHNNDVPLLWGDKRYHTWNYHLRGTFHEKIFKVPLDGGFSCPNRDGKVATGGCTFCSA 64 Query: 62 RGSGDFAGSRRDDLVTQFNNVRDRQHLKWPNAKYIGYFQAYTNTYAPVAELREYYEVILQ 121 RGSGDFAG RR DL QF++V++R H KWP AKY+G+FQAYTNTYAPV ELRE YEVILQ Sbjct: 65 RGSGDFAGDRRMDLEKQFHDVKNRMHEKWPQAKYLGFFQAYTNTYAPVEELREMYEVILQ 124 Query: 122 QPGVVGLSIATRPDCLPDDVVEYLAELNQRTYLWVEMGLQTIHDSTSELINRAHDTQCYI 181 Q GVVGLSIATRPDCLPDDVVEYLAELN+RTYLWVE+GLQT+H+ T++LINRAHD QCY+ Sbjct: 125 QEGVVGLSIATRPDCLPDDVVEYLAELNERTYLWVELGLQTVHEHTAQLINRAHDYQCYV 184 Query: 182 DAVQKLRRHGIRVCTHIIHGLPQETHEMMLETVSAVANMDVQGIKIHLLHLMRKTPMVKQ 241 DAV++LR+H IRVC+HII+GLP E+HE M++T AVA++DVQGIKIHLLHL+RKTPMVKQ Sbjct: 185 DAVERLRKHNIRVCSHIIYGLPGESHEEMMQTADAVAHLDVQGIKIHLLHLLRKTPMVKQ 244 Query: 242 YEAGLLRFLEQDEYVKLIADSLELLPPEMIVHRLTGDAPRDLLIGPLWSLKKWEVLNAID 301 YEAGLL FL Q+EY KL+ D+LE+LPPEMIVHR+TGD P DLLIGP+WS KKWEVLN ID Sbjct: 245 YEAGLLEFLSQEEYTKLVVDTLEILPPEMIVHRITGDGPPDLLIGPMWSRKKWEVLNGID 304 Query: 302 DELIARDTWQGK 313 EL AR++WQGK Sbjct: 305 AELKARNSWQGK 316 >Q9K7S5.1 Q9K7S5_BACHD BH3284 protein Length = 325 Score = 488 bits (1257), Expect = e-136, Method: Compositional matrix adjust. Identities = 217/307 (70%), Positives = 261/307 (85%) Query: 10 PLLWGDKRFHTWNYEMREHMDTKVFKVMLDAGFTCPNRDGSIAKGGCTFCSARGSGDFAG 69 P+ +GDKR+++WN +RE KVFKV LDAGF CPNRDG++A GGCTFCS RGSGDFAG Sbjct: 13 PMRYGDKRYYSWNQHLREQFGEKVFKVPLDAGFDCPNRDGNVASGGCTFCSERGSGDFAG 72 Query: 70 SRRDDLVTQFNNVRDRQHLKWPNAKYIGYFQAYTNTYAPVAELREYYEVILQQPGVVGLS 129 R+DDLVTQF+ +++R H KW + KYIGYFQAYTNTYAPV LREYYEVIL+Q GVVGL+ Sbjct: 73 DRKDDLVTQFHTIKERMHKKWTSGKYIGYFQAYTNTYAPVETLREYYEVILEQEGVVGLA 132 Query: 130 IATRPDCLPDDVVEYLAELNQRTYLWVEMGLQTIHDSTSELINRAHDTQCYIDAVQKLRR 189 IATRPDCLPDDVVEYLAELN+RTYLWVE+GLQT+H+ T+ LINRAHD QCY+D V KLR+ Sbjct: 133 IATRPDCLPDDVVEYLAELNKRTYLWVELGLQTVHERTALLINRAHDYQCYVDGVNKLRK 192 Query: 190 HGIRVCTHIIHGLPQETHEMMLETVSAVANMDVQGIKIHLLHLMRKTPMVKQYEAGLLRF 249 HGIRVC+HII+GLP E H+MM+ET VA +DVQGIKIH LHL+++TPMVKQYE GL+ F Sbjct: 193 HGIRVCSHIINGLPLENHQMMMETAKEVAKLDVQGIKIHSLHLLKRTPMVKQYEKGLVEF 252 Query: 250 LEQDEYVKLIADSLELLPPEMIVHRLTGDAPRDLLIGPLWSLKKWEVLNAIDDELIARDT 309 + +EYV L+ D LE+LPP MI+HRL GD P DL+IGP+WS+KKWEVLNAI+ EL RD+ Sbjct: 253 MSLEEYVNLVVDQLEVLPPHMIIHRLMGDGPGDLMIGPMWSMKKWEVLNAIEAELERRDS 312 Query: 310 WQGKYWR 316 WQGK++R Sbjct: 313 WQGKHYR 319 >A6CMD2.1 A6CMD2_9BACI YtqA Length = 322 Score = 470 bits (1209), Expect = e-131, Method: Compositional matrix adjust. Identities = 208/301 (69%), Positives = 251/301 (83%) Query: 16 KRFHTWNYEMREHMDTKVFKVMLDAGFTCPNRDGSIAKGGCTFCSARGSGDFAGSRRDDL 75 KR+HTWNY +R H KVFKV LD GF CPNRDG++A GGCTFCSA GSGDFAGSR D L Sbjct: 17 KRYHTWNYHLRSHFGHKVFKVALDGGFDCPNRDGTVAYGGCTFCSAAGSGDFAGSRVDPL 76 Query: 76 VTQFNNVRDRQHLKWPNAKYIGYFQAYTNTYAPVAELREYYEVILQQPGVVGLSIATRPD 135 QFN++++R H KW + KY+ YFQA+TNT+APV ELRE YE +L+Q G+VG+SIATRPD Sbjct: 77 EKQFNDIKERMHRKWKDGKYMAYFQAFTNTHAPVEELREKYESVLKQEGIVGISIATRPD 136 Query: 136 CLPDDVVEYLAELNQRTYLWVEMGLQTIHDSTSELINRAHDTQCYIDAVQKLRRHGIRVC 195 CLPDDVVEYLAELN+RTYLWVE+GLQT+H+ T+ +INRAHD QCY++ V KLR+HGIRVC Sbjct: 137 CLPDDVVEYLAELNERTYLWVELGLQTVHEKTASMINRAHDYQCYVEGVNKLRKHGIRVC 196 Query: 196 THIIHGLPQETHEMMLETVSAVANMDVQGIKIHLLHLMRKTPMVKQYEAGLLRFLEQDEY 255 +HII+GLPQE + MM+ET VA +DVQGIKIHLLHL++ TPMVKQYE G L FL +EY Sbjct: 197 SHIINGLPQEDYNMMMETAKEVAKLDVQGIKIHLLHLLKGTPMVKQYEKGQLEFLSFEEY 256 Query: 256 VKLIADSLELLPPEMIVHRLTGDAPRDLLIGPLWSLKKWEVLNAIDDELIARDTWQGKYW 315 V L+ D LE+LPPEMIVHR+TGD P DL+IGP+WS+ KW VLNAID EL RD+WQGK++ Sbjct: 257 VSLVCDQLEILPPEMIVHRITGDGPIDLMIGPMWSVNKWNVLNAIDGELQRRDSWQGKFY 316 Query: 316 R 316 + Sbjct: 317 K 317 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.137 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,978,007,378 Number of extensions: 80728743 Number of successful extensions: 181803 Number of sequences better than 1.0e-05: 852 Number of HSP's gapped: 181329 Number of HSP's successfully gapped: 853 Length of query: 318 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 183 Effective length of database: 1,788,859,178 Effective search space: 327361229574 Effective search space used: 327361229574 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)