BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0231.0046.p (205 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KB08.1 B3KB08_9BACI Putative rRNA methylase 179 1e-43 B1DL70.1 B1DL70_9BACL Putative rRNA methylase 142 2e-32 C1ZSY4.1 C1ZSY4_RHOMR Methyltransferase family protein 124 4e-27 C1P936.1 C1P936_BACCO Putative rRNA methylase 120 6e-26 C3J5G8.1 C3J5G8_9BACI Putative rRNA methylase 117 5e-25 >B3KB08.1 B3KB08_9BACI Putative rRNA methylase Length = 196 Score = 179 bits (455), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 98/201 (48%), Positives = 119/201 (59%), Gaps = 7/201 (3%) Query: 1 MGFMSVLSFAHKLTEGRLQPGGRAIDATVGTGADTLFLAKAAGPRGGVYGFDIQPXXXXX 60 MGF+SVLSFAHKL RL+PG A+DAT GTGADTL+LAK G +G VY FDIQ Sbjct: 1 MGFLSVLSFAHKLVSERLRPGDIALDATAGTGADTLYLAKCTGSKGKVYAFDIQ---EQA 57 Query: 61 XXXXXXXXXXXXXXXXSPVTLLLQSHAAMAEAVPPDWRGTVSAVMFNLGYLPSGDADKTI 120 + V+LLLQSH+ M E VP G + A+MFNLGYLP+ +DK I Sbjct: 58 LQLTRERLDKEPPGTLAEVSLLLQSHSLMRECVPEIEHGRMGAIMFNLGYLPADSSDKRI 117 Query: 121 ITEPSSTXXXXXXXXXXXRPGGIITAVLYPGHEGGDRXXXXXXXXXXGLPSRQAQAXXXX 180 +TE +ST RPGGIIT VLYPGH+GGD LP + Q Sbjct: 118 MTETASTLTALEAAIELLRPGGIITIVLYPGHKGGDAEADAVQAWAGELPQHKVQT---- 173 Query: 181 IVYRQLQRASAPYTLAVEKKK 201 I+YR LQR+ APY +A+E+KK Sbjct: 174 ILYRGLQRSEAPYLIALERKK 194 >B1DL70.1 B1DL70_9BACL Putative rRNA methylase Length = 192 Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 87/200 (43%), Positives = 107/200 (53%), Gaps = 8/200 (4%) Query: 1 MGFMSVLSFAHKLTEGRLQPGGRAIDATVGTGADTLFLAKAAGPRGGVYGFDIQPXXXXX 60 MGF+S+LS AH+ R+QPG IDAT G G DTL LA+ G RG V+ FDIQ Sbjct: 1 MGFLSILSMAHQWLAERVQPGDIVIDATAGGGVDTLKLAELVGARGTVHAFDIQ--QDAL 58 Query: 61 XXXXXXXXXXXXXXXXSPVTLLLQSHAAMAEAVPPDWRGTVSAVMFNLGYLPSGDADKTI 120 V L L++HA MAEAV P G V+AVMFNLGYLP G D+++ Sbjct: 59 DRTLERLRPLEERGKLPQVRLHLRNHALMAEAVGPSAEGNVAAVMFNLGYLPGG--DESV 116 Query: 121 ITEPSSTXXXXXXXXXXXRPGGIITAVLYPGHEGGDRXXXXXXXXXXGLPSRQAQAXXXX 180 IT P++T R GGI+T LYPGH GG LP A Sbjct: 117 ITVPTTTIAALDAALALLRRGGIVTVALYPGHPGGAEEAAIVADWAAKLPG----ALYAA 172 Query: 181 IVYRQLQRASAPYTLAVEKK 200 ++YRQ QR +APY +AVEK+ Sbjct: 173 VLYRQPQRDTAPYLIAVEKR 192 >C1ZSY4.1 C1ZSY4_RHOMR Methyltransferase family protein Length = 202 Score = 124 bits (312), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 68/153 (44%), Positives = 83/153 (54%), Gaps = 6/153 (3%) Query: 3 FMSVLSFAHKLTEGRLQPGGRAIDATVGTGADTLFLAKAAGPRGGVYGFDIQPXXXXXXX 62 F+ AH++ LQPG A+DATVG G DTLFLA+ GP+G VYGFD+Q Sbjct: 11 FLEGTVLAHRIVASVLQPGEMAVDATVGNGHDTLFLARQVGPQGHVYGFDVQ-----EEA 65 Query: 63 XXXXXXXXXXXXXXSPVTLLLQSHAAMAEAVPPDWRGTVSAVMFNLGYLPSGDADKTIIT 122 VTLL H MA+AVP W G + AVMFNLGYLP G +D++ IT Sbjct: 66 LARTRRRLEEAGLHERVTLLRMGHEHMAKAVPVAWHGRIGAVMFNLGYLPGG-SDRSCIT 124 Query: 123 EPSSTXXXXXXXXXXXRPGGIITAVLYPGHEGG 155 P +T RPGG++T V Y GH GG Sbjct: 125 RPQTTVPALEAALRLLRPGGVLTVVAYRGHPGG 157 >C1P936.1 C1P936_BACCO Putative rRNA methylase Length = 190 Score = 120 bits (302), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 74/201 (36%), Positives = 96/201 (47%), Gaps = 12/201 (5%) Query: 1 MGFMSVLSFAHKLTEGRLQPGGRAIDATVGTGADTLFLAKAAGPRGGVYGFDIQPXXXXX 60 M + VLSFAH L E ++ GG AIDAT G G DT+FLAK G G V+ FDIQP Sbjct: 1 MNMLPVLSFAHLLLEKAVKSGGFAIDATAGNGHDTVFLAKRVGEGGKVFAFDIQP----- 55 Query: 61 XXXXXXXXXXXXXXXXSPVTLLLQSHAAMAEAVPPDWRGTVSAVMFNLGYLPSGDADKTI 120 + L H +E +P G +S +FNLGYLP D+DKT+ Sbjct: 56 EAVRRTKERLEKEGLVTRAELFCTGHEHASECIPAALHGKISGAVFNLGYLP--DSDKTV 113 Query: 121 ITEPSSTXXXXXXXXXXXRPGGIITAVLYPGHEGGDRXXXXXXXXXXGLPSRQAQAXXXX 180 IT P ST GGII V+Y GHEGG L ++A Sbjct: 114 ITRPESTIAALEQIFSMLETGGIIAVVVYHGHEGGAYERDRLLDYVKQLDQKKAHV---- 169 Query: 181 IVYRQLQRASA-PYTLAVEKK 200 + Y L +A+ P+ +A+EK+ Sbjct: 170 LRYEFLNQANHPPFLIAIEKR 190 >C3J5G8.1 C3J5G8_9BACI Putative rRNA methylase Length = 195 Score = 117 bits (294), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 68/202 (33%), Positives = 98/202 (48%), Gaps = 10/202 (4%) Query: 1 MGFMSVLSFAHKLTEGRLQPGGRAIDATVGTGADTLFLAKAAGPRGGVYGFDIQPXXXXX 60 M M++L FA L + + G A+DATVG G DT++LA+ G G V+GFDIQP Sbjct: 1 MALMNILPFARFLLDQAVNEGDIAVDATVGNGHDTVYLAERVGETGHVFGFDIQP----- 55 Query: 61 XXXXXXXXXXXXXXXXSPVTLLLQSHAAMAEAVPPDWRGTVSAVMFNLGYLPSGDADKTI 120 TL +SH+ + EA+P D G ++ +FNLGYLP G +K I Sbjct: 56 EAITAASARLAEHGLCGRATLFERSHSELLEALPADVHGRIAGAVFNLGYLPGG--NKQI 113 Query: 121 ITEPSSTXXXXXXXXXXXRPGGIITAVLYPGHEGGDRXXXXXXXXXXGLPSRQAQAXXXX 180 +T+P ST +PGG+I V+Y GH G R L R+ A Sbjct: 114 VTQPESTIEAVRQLLSVMKPGGVIVLVVYHGHPEGKRERDALLDYVRSLDQRRVHALKYE 173 Query: 181 IVYRQLQRASAPYTLAVEKKKE 202 + RQ + P+ +A+E + + Sbjct: 174 FINRQ---NNPPFLIALENRAD 192 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.135 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 963,311,167 Number of extensions: 29897045 Number of successful extensions: 61512 Number of sequences better than 1.0e-05: 274 Number of HSP's gapped: 61024 Number of HSP's successfully gapped: 274 Length of query: 205 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 76 Effective length of database: 1,845,385,268 Effective search space: 140249280368 Effective search space used: 140249280368 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 128 (53.9 bits)