BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0231.0031.p (175 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KAZ3.1 B3KAZ3_9BACI Putative uncharacterized protein 162 1e-38 B1D4Y1.1 B1D4Y1_9BACL Putative uncharacterized protein 147 5e-34 C2SJ88.1 C2SJ88_BACCE Putative uncharacterized protein 117 4e-25 C2PV90.1 C2PV90_BACCE Putative uncharacterized protein 117 5e-25 A9VSU5.1 A9VSU5_BACWK Putative uncharacterized protein 115 1e-24 >B3KAZ3.1 B3KAZ3_9BACI Putative uncharacterized protein Length = 171 Score = 162 bits (410), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 75/171 (43%), Positives = 112/171 (65%) Query: 4 LFHPTVFDNIKIAFENQIYDYDNLDGILIVTDRADLLNLALMSREFSLSFRLAGSQNVTS 63 +F PT+F+N+K+ EN +YD DNLD I+ VTDR DLL++A +SR FSL F L ++ Sbjct: 1 MFDPTIFENLKVGIENAVYDLDNLDEIIRVTDRKDLLDMATLSRNFSLRFELVQQSAASA 60 Query: 64 QVVLLSSVKELSDEILETPGSDPGCGLVLRFYMEIRNVNVQCAAAQRILSSIWGPDVQPV 123 ++ L + +++L+ EILE P PGC L LRF+ I + C +I+ IW P++ PV Sbjct: 61 EICLETGLRDLAAEILEIPEEQPGCLLKLRFHKNIADPAYSCPVIAQIIKEIWNPELPPV 120 Query: 124 QSLTYRYGQEDGTCNNCIELKFNRQITEEQMEDIPHLLEFLVQSAEELEDI 174 Q++ Y YG + +N IEL+F R+I EEQM DIP++ EF++++ EL I Sbjct: 121 QTIRYAYGDDTVPIHNAIELRFPRKINEEQMGDIPNITEFMLRTLVELNRI 171 >B1D4Y1.1 B1D4Y1_9BACL Putative uncharacterized protein Length = 181 Score = 147 bits (370), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 74/179 (41%), Positives = 113/179 (63%), Gaps = 7/179 (3%) Query: 3 FLFHPTVFDNIKIAFENQIYDYDNLDGILIVTDRADLLNLALMSREFSLSFRLAGS---Q 59 LF PT+FDN+K+A ENQ+YD DNLD + V +R D L++A+M REF+L F LAGS + Sbjct: 3 MLFDPTIFDNLKVALENQLYDLDNLDERIRVVNRVDRLDMAVMGREFALQFVLAGSDRQK 62 Query: 60 NVTSQVVLLSSVKELSDEILE-TPGSDPGCGLVLRFYMEIRNVNVQCAAAQRILSSIWGP 118 + ++ L +S+++L+ E+LE G PGC L L F++ + + C Q + WG Sbjct: 63 RIIGEIRLDTSLRDLATELLELQEGDPPGCSLRLLFHLVVLDAETHCLRIQTAIREQWGA 122 Query: 119 DVQPVQSLTYRYGQEDG---TCNNCIELKFNRQITEEQMEDIPHLLEFLVQSAEELEDI 174 +V Q+L++ YG + G N +EL+FNR+I EEQM D+P L+E ++ + E LE + Sbjct: 123 EVSLTQTLSFVYGSDSGGGTVYKNAVELRFNRRIDEEQMNDLPELIEHMLLTLEALEQL 181 >C2SJ88.1 C2SJ88_BACCE Putative uncharacterized protein Length = 179 Score = 117 bits (293), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 61/165 (36%), Positives = 97/165 (58%), Gaps = 7/165 (4%) Query: 4 LFHPTVFDNIKIAFENQIYDYDNLDGILIVTDRADLLNLALMSREFSLSFRLAGSQNVTS 63 +F PT F+N+K+ E +YD+D L G ++VTDR D+++LA +SR +S+SF+L + Sbjct: 5 MFDPTAFENLKVIVEGAVYDFD-LHGDILVTDRKDVMDLASLSRMYSISFQLTETFKTMV 63 Query: 64 QVVLLSSV--KELSDEILETPGSDPGCGLVLRFYMEIRNVNVQCAAAQRILSSIWGPDVQ 121 + SV K LS EILE P PGC + L F E+ + C + +L SIWG + Sbjct: 64 EATFSLSVDAKNLSGEILEVPQFIPGCEMKLEFSFEMEQPEIGCEEIETLLHSIWGKERM 123 Query: 122 PVQSLTYRYGQEDGTCNNCIELKFNRQITEEQMED----IPHLLE 162 Q ++Y Y ++ + +N +E+ F + ITEE ++D I H++E Sbjct: 124 ITQKISYEYNKQAISYHNKVEVLFQKSITEEHVDDLIAVISHMIE 168 >C2PV90.1 C2PV90_BACCE Putative uncharacterized protein Length = 175 Score = 117 bits (292), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 57/171 (33%), Positives = 102/171 (59%), Gaps = 3/171 (1%) Query: 4 LFHPTVFDNIKIAFENQIYDYDNLDGILIVTDRADLLNLALMSREFSLSFRLAGSQNVTS 63 +F PT F+N+K+ E +YD+D L G ++VTDR D+++LA +SR +S+SF+L + Sbjct: 1 MFDPTAFENLKVIVEGAVYDFD-LHGDILVTDRKDVMDLASLSRMYSISFQLTETFKTMV 59 Query: 64 QVVLLSSV--KELSDEILETPGSDPGCGLVLRFYMEIRNVNVQCAAAQRILSSIWGPDVQ 121 + + SV K LS EILE P PGC + L F E+ + C + +L SIWG + Sbjct: 60 EAIFSLSVDAKNLSGEILEVPQFIPGCEMKLEFSFEMEQPEIGCEEIETLLHSIWGKERM 119 Query: 122 PVQSLTYRYGQEDGTCNNCIELKFNRQITEEQMEDIPHLLEFLVQSAEELE 172 Q ++Y Y ++ + +N +E+ F + ITE+ ++D+ ++ ++++ ++ Sbjct: 120 ITQKISYEYNKQAISYHNKVEVLFQKSITEDHVDDLIAVISHMIETVRTIQ 170 >A9VSU5.1 A9VSU5_BACWK Putative uncharacterized protein Length = 175 Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 57/171 (33%), Positives = 101/171 (59%), Gaps = 3/171 (1%) Query: 4 LFHPTVFDNIKIAFENQIYDYDNLDGILIVTDRADLLNLALMSREFSLSFRLAGSQNVTS 63 +F PT F+N+K+ E +YD+D L G ++VTDR D+++LA +SR +S+SF+L + Sbjct: 1 MFDPTAFENLKVIVEGAVYDFD-LHGDILVTDRKDVMDLASLSRMYSISFQLTETFKTMV 59 Query: 64 QVVLLSSV--KELSDEILETPGSDPGCGLVLRFYMEIRNVNVQCAAAQRILSSIWGPDVQ 121 + SV K LS EILE P PGC + L F E+ + C + +L SIWG + Sbjct: 60 EATFSLSVDAKNLSGEILEVPQFIPGCEMKLEFSFEMEQPEIGCEEIETLLHSIWGKERM 119 Query: 122 PVQSLTYRYGQEDGTCNNCIELKFNRQITEEQMEDIPHLLEFLVQSAEELE 172 Q ++Y Y ++ + +N +E+ F + ITE+ ++D+ ++ ++++ ++ Sbjct: 120 ITQKISYEYNKQAISYHNKVEVLFQKSITEDHVDDLIAVISHMIETVRTIQ 170 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.138 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 964,042,443 Number of extensions: 34311852 Number of successful extensions: 82876 Number of sequences better than 1.0e-05: 86 Number of HSP's gapped: 82706 Number of HSP's successfully gapped: 86 Length of query: 175 Length of database: 3,060,696,203 Length adjustment: 126 Effective length of query: 49 Effective length of database: 1,873,648,313 Effective search space: 91808767337 Effective search space used: 91808767337 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)