BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0231.0029.p (189 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C1IB73.1 C1IB73_9CLOT Transcriptional regulator 247 3e-64 Q893H0.1 Q893H0_CLOTE Transcriptional regulator 234 4e-60 A6TK08.1 A6TK08_ALKMQ Putative transcriptional regulator, TetR f... 185 2e-45 A6TJY5.1 A6TJY5_ALKMQ Putative transcriptional regulator, TetR f... 183 5e-45 Q8DVH5.1 Q8DVH5_STRMU Putative transcriptional regulator 179 9e-44 >C1IB73.1 C1IB73_9CLOT Transcriptional regulator Length = 188 Score = 247 bits (631), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 122/186 (65%), Positives = 149/186 (80%) Query: 1 VSNSLLTKKALAHSLKTLMEHVPLNKISVKHLVDDCGLNRQTFYYHFQDIFELLGWIYQT 60 +S+SL TKK+LA SLK LM PL+KISVK +V DC LNRQTFYYHF DI+EL+ WIY+T Sbjct: 1 MSSSLQTKKSLAKSLKKLMRSTPLHKISVKDVVKDCNLNRQTFYYHFHDIYELVEWIYKT 60 Query: 61 EALESIAQYRSYNTWTGGFYRIFCYIEANKAFCNNTLDSLGRTHLDAYLYEVTNDLIMGV 120 EA+ESIA+Y+SYNTW GFY+IF YIE NK FC NTL+SL RTHLD YL+ V NDL+MGV Sbjct: 61 EAIESIAEYKSYNTWVDGFYKIFLYIEGNKEFCYNTLNSLSRTHLDMYLFSVINDLLMGV 120 Query: 121 IQELAGGMEVDAEDKRFIANFYTLAFTGLVIHWMRGGMKDDPKVIIGKLSVLIEGNFAKA 180 I E++ M + EDK+F+A+FYT AF GLVI WM+ GMK+DPKV+I KL LIEGNF A Sbjct: 121 INEISSDMSIKIEDKKFMADFYTHAFAGLVIQWMKDGMKEDPKVLIEKLKELIEGNFVIA 180 Query: 181 LHQYEK 186 L +Y++ Sbjct: 181 LKRYQQ 186 >Q893H0.1 Q893H0_CLOTE Transcriptional regulator Length = 185 Score = 234 bits (596), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 109/184 (59%), Positives = 142/184 (77%) Query: 4 SLLTKKALAHSLKTLMEHVPLNKISVKHLVDDCGLNRQTFYYHFQDIFELLGWIYQTEAL 63 SL+TKK LA+SLK LM PL+KI++K + DC +NRQTFYYHFQDI++LL WIY+TEA+ Sbjct: 2 SLMTKKELANSLKKLMSIKPLDKITIKDITADCNVNRQTFYYHFQDIYDLLDWIYKTEAI 61 Query: 64 ESIAQYRSYNTWTGGFYRIFCYIEANKAFCNNTLDSLGRTHLDAYLYEVTNDLIMGVIQE 123 + I++Y++Y TW GF IF YI NK FC N+L SLGR HLD +LY+ T DL+M VI E Sbjct: 62 DGISEYKTYKTWQKGFLMIFQYIIHNKEFCINSLHSLGRDHLDNFLYKFTFDLLMEVINE 121 Query: 124 LAGGMEVDAEDKRFIANFYTLAFTGLVIHWMRGGMKDDPKVIIGKLSVLIEGNFAKALHQ 183 ++ GM+V EDK+FIANFYT AF L+I WM+ GMK+ P++II KL+ LIEG+ KAL + Sbjct: 122 VSEGMDVLNEDKKFIANFYTYAFVNLLIMWMKNGMKESPEIIIEKLNTLIEGDIEKALKK 181 Query: 184 YEKK 187 YE+K Sbjct: 182 YEQK 185 >A6TK08.1 A6TK08_ALKMQ Putative transcriptional regulator, TetR family Length = 184 Score = 185 bits (469), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 86/180 (47%), Positives = 121/180 (67%) Query: 7 TKKALAHSLKTLMEHVPLNKISVKHLVDDCGLNRQTFYYHFQDIFELLGWIYQTEALESI 66 TK+A+A SLK + L I+VK +V DC +NRQTFYYHFQD F LL WI++TE ++I Sbjct: 5 TKEAMAASLKERLRKTTLQNITVKDIVKDCEVNRQTFYYHFQDSFALLEWIFETEGTKAI 64 Query: 67 AQYRSYNTWTGGFYRIFCYIEANKAFCNNTLDSLGRTHLDAYLYEVTNDLIMGVIQELAG 126 + ++Y+TW GF R+F Y+E NK +N S+GR H++ YLY V L++ VI E A Sbjct: 65 STNKTYDTWEQGFLRVFQYVEQNKMLVHNAYHSMGREHVERYLYSVVYRLLINVINEQAK 124 Query: 127 GMEVDAEDKRFIANFYTLAFTGLVIHWMRGGMKDDPKVIIGKLSVLIEGNFAKALHQYEK 186 GM V +DK FIA+FY AF G+++ W+ GMK+ P+ I+ +LS LI G +AL +YE+ Sbjct: 125 GMNVPEDDKGFIADFYKYAFVGIMLEWIHQGMKERPEDIVDRLSKLITGAIHRALLKYEQ 184 >A6TJY5.1 A6TJY5_ALKMQ Putative transcriptional regulator, TetR family Length = 184 Score = 183 bits (465), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 88/180 (48%), Positives = 120/180 (66%) Query: 7 TKKALAHSLKTLMEHVPLNKISVKHLVDDCGLNRQTFYYHFQDIFELLGWIYQTEALESI 66 TKKA+A SLK +E L I+VK +V DC +NRQTFYYHFQD F L+ WI++TE ++I Sbjct: 5 TKKAMAASLKERLEKTTLQNITVKDIVKDCEINRQTFYYHFQDSFALMEWIFETEGTKAI 64 Query: 67 AQYRSYNTWTGGFYRIFCYIEANKAFCNNTLDSLGRTHLDAYLYEVTNDLIMGVIQELAG 126 + ++Y+TW GF + F Y+E NK N S+GR H++ YLY V L++ VI E A Sbjct: 65 SNNKTYDTWERGFLQAFQYVEQNKMLVLNAYHSMGREHVERYLYSVVYRLLINVINEQAK 124 Query: 127 GMEVDAEDKRFIANFYTLAFTGLVIHWMRGGMKDDPKVIIGKLSVLIEGNFAKALHQYEK 186 GM V +DK FIA+FY F GL++ W+ GMK+ PK I+ +LS LI G+ KAL +YE+ Sbjct: 125 GMNVPEDDKGFIAHFYKYVFVGLMLEWIHQGMKECPKDIVDRLSKLITGDIHKALLKYEQ 184 >Q8DVH5.1 Q8DVH5_STRMU Putative transcriptional regulator Length = 188 Score = 179 bits (455), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 81/183 (44%), Positives = 120/183 (65%) Query: 4 SLLTKKALAHSLKTLMEHVPLNKISVKHLVDDCGLNRQTFYYHFQDIFELLGWIYQTEAL 63 S TKKAL SLK L+ PL KI+++ + DDCG++R TFYYHF+DI++L+ W+ A Sbjct: 2 SQTTKKALEDSLKHLLLQKPLPKITIQDITDDCGISRMTFYYHFKDIYDLIEWVCIENAS 61 Query: 64 ESIAQYRSYNTWTGGFYRIFCYIEANKAFCNNTLDSLGRTHLDAYLYEVTNDLIMGVIQE 123 +++ + + Y TW G RIF + ANK F N S+ R ++ YLY +T DL++ V+ E Sbjct: 62 QALGENKDYETWEEGLLRIFNAVIANKPFIMNVYHSVSREQIETYLYTLTYDLMINVVNE 121 Query: 124 LAGGMEVDAEDKRFIANFYTLAFTGLVIHWMRGGMKDDPKVIIGKLSVLIEGNFAKALHQ 183 A G++V+ E+K FIA+FY A GL++ W+R MK+DP++I+ L L+ GN ALH Sbjct: 122 KAKGLKVNDEEKNFIADFYKFALVGLMLDWIRKDMKEDPRIIVKHLDSLVHGNIVTALHH 181 Query: 184 YEK 186 Y+K Sbjct: 182 YDK 184 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.323 0.139 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,148,947,618 Number of extensions: 46338671 Number of successful extensions: 118666 Number of sequences better than 1.0e-05: 315 Number of HSP's gapped: 118526 Number of HSP's successfully gapped: 315 Length of query: 189 Length of database: 3,060,696,203 Length adjustment: 128 Effective length of query: 61 Effective length of database: 1,854,806,283 Effective search space: 113143183263 Effective search space used: 113143183263 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 127 (53.5 bits)