BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0231.0027.p (240 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DKB6.1 B1DKB6_9BACL DSBA oxidoreductase 234 6e-60 C0Z5Y3.1 C0Z5Y3_BREBN Putative uncharacterized protein 233 2e-59 Q5L3J3.1 Q5L3J3_GEOKA Protein-disulfide isomerase 221 5e-56 C3J492.1 C3J492_9BACI DSBA oxidoreductase 218 4e-55 B7Y5L8.1 B7Y5L8_9BACI DSBA oxidoreductase 218 4e-55 >B1DKB6.1 B1DKB6_9BACL DSBA oxidoreductase Length = 241 Score = 234 bits (596), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 120/239 (50%), Positives = 153/239 (64%), Gaps = 3/239 (1%) Query: 1 MRIDVWSDNACPFCYIGKRRLEHALSQFEGQEKVEVVFRSFQLDPGAPVQATQDVYDMLA 60 M+I+VWSD ACPFCYIGKRRLE ALS+FE ++VEV FRSF+LDP APV+ DVYD L+ Sbjct: 1 MKIEVWSDFACPFCYIGKRRLEQALSEFEHGDQVEVEFRSFELDPNAPVEIGHDVYDYLS 60 Query: 61 AKYGMTREKAIATNAQLAEQAKGVGLEFNFDTVQNTNTFDSHRLSHFAAAKGKGAEMSER 120 KYGM+R++AI+ N QL +QAK +GL+++FDT+ TNTFD+H+L+HFAA GK EM+ER Sbjct: 61 NKYGMSRQQAISNNVQLTQQAKTLGLDYHFDTMILTNTFDAHQLTHFAAKYGKREEMAER 120 Query: 121 LLCAYFTDGHNLADREELVSXXXXXXXXXXXXXXXXXXXXXXXXVDTDIAEAQRLNITGV 180 L AYFTD +L +E L V T+ EA +L + GV Sbjct: 121 LFKAYFTDSKHLGRKEVLADLAAEIGLDREEALKALEAGTYKQEVRTNEQEAGQLGVRGV 180 Query: 181 PFFVFNNKYAVSGAQPGPVFSEVLDTVWAEEKNIPELQVIGQPKSKAPDAEGCDDGSCS 239 PFFV + KYAVSGAQP VF + + W E+N P L VIG + C DG C+ Sbjct: 181 PFFVIDRKYAVSGAQPSEVFLQAVSKAW--EENKP-LTVIGGDSGANGADDACVDGVCA 236 >C0Z5Y3.1 C0Z5Y3_BREBN Putative uncharacterized protein Length = 241 Score = 233 bits (593), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 118/241 (48%), Positives = 149/241 (61%), Gaps = 1/241 (0%) Query: 1 MRIDVWSDNACPFCYIGKRRLEHALSQFEGQEKVEVVFRSFQLDPGAPVQATQDVYDMLA 60 M+I++WSD ACPFCYIGKRRLE ALSQF +++VEVV+RSFQLDP D++++LA Sbjct: 1 MKIEIWSDFACPFCYIGKRRLEGALSQFPHKDQVEVVYRSFQLDPQMERDTDMDMHEVLA 60 Query: 61 AKYGMTREKAIATNAQLAEQAKGVGLEFNFDTVQNTNTFDSHRLSHFAAAKGKGAEMSER 120 AKY + E+A N Q+ + AKGVGL+++FDT+ TNTFD+HRL+HFA A GK EM ER Sbjct: 61 AKYSIPLEQAKGMNDQVTQMAKGVGLDYHFDTMIPTNTFDAHRLTHFAHAHGKMKEMKER 120 Query: 121 LLCAYFTDGHNLADREELVSXXXXXXXXXXXXXXXXXXXXXXXXVDTDIAEAQRLNITGV 180 +L AYFT+ +L D E L V D L +TGV Sbjct: 121 MLKAYFTESLHLGDHEVLAQLASEVGLDKEATLAMLAGDEYREQVQEDKQRGNDLGVTGV 180 Query: 181 PFFVFNNKYAVSGAQPGPVFSEVLDTVWAEEKNIPELQVIGQPKSKAPDA-EGCDDGSCS 239 PFFV NNKYAVSGAQPG VF L+ VW EE P L+ + + K + + C DGSC Sbjct: 181 PFFVINNKYAVSGAQPGEVFLGALNQVWEEESATPALKFVQNDEKKDEQSGDNCADGSCK 240 Query: 240 I 240 I Sbjct: 241 I 241 >Q5L3J3.1 Q5L3J3_GEOKA Protein-disulfide isomerase Length = 235 Score = 221 bits (562), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 113/240 (47%), Positives = 146/240 (60%), Gaps = 6/240 (2%) Query: 1 MRIDVWSDNACPFCYIGKRRLEHALSQFEGQEKVEVVFRSFQLDPGAPVQATQDVYDMLA 60 M+I+VWSD CPFCYIGKRRLE AL QF +E VEVVFRSF+LDP A + +++++A Sbjct: 1 MKIEVWSDFVCPFCYIGKRRLEQALEQFPHREDVEVVFRSFELDPNAKKETPLTIHEIIA 60 Query: 61 AKYGMTREKAIATNAQLAEQAKGVGLEFNFDTVQNTNTFDSHRLSHFAAAKGKGAEMSER 120 KYG++ E+A NA + QA+ VGL F F+T++ TNTFD+HRL+H+A KGK EM ER Sbjct: 61 NKYGISIEEAKRANADVGRQAEAVGLTFRFETMKPTNTFDAHRLAHYAKEKGKLNEMVER 120 Query: 121 LLCAYFTDGHNLADREELVSXXXXXXXXXXXXXXXXXXXXXXXXVDTDIAEAQRLNITGV 180 L AYFT+ ++DR+ L++ V D EA L + GV Sbjct: 121 LFYAYFTESKRISDRDVLLAIAEATGLDRAEAEEVLASGRYTEEVRRDEEEAAALGVRGV 180 Query: 181 PFFVFNNKYAVSGAQPGPVFSEVLDTVWAEEKNIPELQVIGQPKSKAPDAEGCDDGSCSI 240 PFFV N KYA+SGAQP VF L+ VW EE+ L +S A + C DGSCSI Sbjct: 181 PFFVLNGKYAISGAQPVDVFRRALEKVWEEEQQASPL------RSLAGEGGMCADGSCSI 234 >C3J492.1 C3J492_9BACI DSBA oxidoreductase Length = 235 Score = 218 bits (554), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 113/240 (47%), Positives = 146/240 (60%), Gaps = 6/240 (2%) Query: 1 MRIDVWSDNACPFCYIGKRRLEHALSQFEGQEKVEVVFRSFQLDPGAPVQATQDVYDMLA 60 M+I+VWSD CPFCYIGKRRLE AL QF +E VEVVFRSF+LDP A + +++++A Sbjct: 1 MKIEVWSDFVCPFCYIGKRRLEQALEQFSHREDVEVVFRSFELDPNAKKETPLTIHEIIA 60 Query: 61 AKYGMTREKAIATNAQLAEQAKGVGLEFNFDTVQNTNTFDSHRLSHFAAAKGKGAEMSER 120 KYG++ E+A NA + QA+ VGL F F+T++ TNTFD+HRL+H+A KGK EM ER Sbjct: 61 NKYGISIEEAKRANADIGRQAEAVGLTFRFETMKPTNTFDAHRLAHYAKEKGKLNEMVER 120 Query: 121 LLCAYFTDGHNLADREELVSXXXXXXXXXXXXXXXXXXXXXXXXVDTDIAEAQRLNITGV 180 L AYFT+ ++DR+ L++ V D EA L + GV Sbjct: 121 LFYAYFTESKRISDRDVLLALAEAAGLDRAEAKEVLNSGRYTEEVRRDEEEAAALGVRGV 180 Query: 181 PFFVFNNKYAVSGAQPGPVFSEVLDTVWAEEKNIPELQVIGQPKSKAPDAEGCDDGSCSI 240 PFFV N KYA+SGAQP VF L+ VW EE+ L +S A + C DGSCSI Sbjct: 181 PFFVLNGKYAISGAQPVDVFRRALEKVWEEEQQASPL------RSLAGEGGMCADGSCSI 234 >B7Y5L8.1 B7Y5L8_9BACI DSBA oxidoreductase Length = 235 Score = 218 bits (554), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 113/240 (47%), Positives = 146/240 (60%), Gaps = 6/240 (2%) Query: 1 MRIDVWSDNACPFCYIGKRRLEHALSQFEGQEKVEVVFRSFQLDPGAPVQATQDVYDMLA 60 M+I+VWSD CPFCYIGKRRLE AL QF +E VEVVFRSF+LDP A + +++++A Sbjct: 1 MKIEVWSDFVCPFCYIGKRRLEQALEQFSHREDVEVVFRSFELDPNAKKETPLTIHEIIA 60 Query: 61 AKYGMTREKAIATNAQLAEQAKGVGLEFNFDTVQNTNTFDSHRLSHFAAAKGKGAEMSER 120 KYG++ E+A NA + QA+ VGL F F+T++ TNTFD+HRL+H+A KGK EM ER Sbjct: 61 NKYGISIEEAKRANADIGRQAEAVGLTFRFETMKPTNTFDAHRLAHYAKEKGKLNEMVER 120 Query: 121 LLCAYFTDGHNLADREELVSXXXXXXXXXXXXXXXXXXXXXXXXVDTDIAEAQRLNITGV 180 L AYFT+ ++DR+ L++ V D EA L + GV Sbjct: 121 LFYAYFTESKRISDRDVLLALAEAAGLDRAEAKEVLNSGRYTEEVRRDEEEAAALGVRGV 180 Query: 181 PFFVFNNKYAVSGAQPGPVFSEVLDTVWAEEKNIPELQVIGQPKSKAPDAEGCDDGSCSI 240 PFFV N KYA+SGAQP VF L+ VW EE+ L +S A + C DGSCSI Sbjct: 181 PFFVLNGKYAISGAQPVDVFRRALEKVWEEEQQASPL------RSLAGEGGMCADGSCSI 234 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.133 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,305,676,451 Number of extensions: 46201596 Number of successful extensions: 100152 Number of sequences better than 1.0e-05: 542 Number of HSP's gapped: 99155 Number of HSP's successfully gapped: 542 Length of query: 240 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 108 Effective length of database: 1,817,122,223 Effective search space: 196249200084 Effective search space used: 196249200084 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)