BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0231.0026.p (428 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q8YSM0.1 Q8YSM0_ANASP Alr3064 protein 138 1e-30 Q3MEW5.1 Q3MEW5_ANAVT Glycosyl transferase, group 1 128 1e-27 C4E5I7.1 C4E5I7_STRRS Glycosyltransferase 122 7e-26 Q4QJP3.1 Q4QJP3_HAEI8 Putative UDP-galactose--lipooligosaccharid... 115 1e-23 A8YP12.1 A8YP12_MICAE Genome sequencing data, contig C328 114 2e-23 >Q8YSM0.1 Q8YSM0_ANASP Alr3064 protein Length = 470 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 109/432 (25%), Positives = 191/432 (44%), Gaps = 35/432 (8%) Query: 6 FMHTNYFEDFFVKGLGLSEEEYVSSYHNDFSFDYARLLHTKGIRTTIYNFTRVGDEVRTY 65 +H D F+ + +S E + + + F Y L G+RT ++ + + + Sbjct: 29 LLHCYDLIDDFLDSINISFETFCKEFVGSWMFGYINALKEVGVRTVLFCISARVERPSRF 88 Query: 66 RHGIVDCTIKFIPVGRLYKSYCLI-----------------------PLSHR--TPI--- 97 H + I +P Y+ Y + P+ TP+ Sbjct: 89 THIPTNTQICVLPPSPTYRPYRAVRRKSLNVYGASAAQSFKEIQDSNPIRRSLLTPVKDL 148 Query: 98 GKFISQYISTIQKDLAGILRGDGVSLIYAQEYASGRFERLASTAKELNIPIIAAYHGGS- 156 K + Y+ T LA L+ + I QEY RF+ K IP+ A + GG Sbjct: 149 AKSVGTYLCTPLGSLAEELKRENCQAILCQEYEYARFDSCTLLGKMTGIPVFATFQGGDR 208 Query: 157 IHKWI-MPIKKHTLHKASFLTTLNEDEQKSMVSHFPHLAERIRLLPNFVNSAIFYKRDKE 215 W+ +P + + + + + E K + S + A +I + N V+ + D+ Sbjct: 209 TQSWLEVPWRHLSFRNCAGVIVATQTEIKRIQSAYGIGASKIGQIFNPVDITTWQGSDRL 268 Query: 216 QALAELGLDPENRYLITVGRLFEYQKGHSLLVQAAEQL-RHIPD--LKILIAGGGPDEQS 272 QA EL + + R ++ GR+ +KG +L++A +Q+ PD L++LI G G D + Sbjct: 269 QARKELDIPLDARVVVWHGRVEIERKGLDILLEAWQQICNQRPDINLRLLIVGTGSDAEQ 328 Query: 273 LRALIKEKNLEDRIILLGTIRNKDVLASYYSVSELFVLPSRYEGLPLVILEAGACGLPTV 332 L I L+ + L + ++ ++ Y S ++++ LPSR EG P+ LEA AC LP V Sbjct: 329 LHQRIASMQLKGVLWLNEFVSDRAIMQRYLSAADVYTLPSRQEGFPVAPLEAMACSLPVV 388 Query: 333 AFNVMGVRGLVQHG--VSGLLAEGLEPSALAASLDTLLGNPELCAEMGEAALQIVRSDYS 390 A + GV + G GL+ + +ALA +L +L N E+G+ A Q V S ++ Sbjct: 389 AADAPGVPDIFAGGDISGGLVVPREDATALAQALTQVLDNEAWGRELGKRARQRVESYFA 448 Query: 391 EEIIGARLYNLL 402 +I+G +L + + Sbjct: 449 PQIVGKQLRDFI 460 >Q3MEW5.1 Q3MEW5_ANAVT Glycosyl transferase, group 1 Length = 470 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 109/432 (25%), Positives = 192/432 (44%), Gaps = 35/432 (8%) Query: 6 FMHTNYFEDFFVKGLGLSEEEYVSSYHNDFSFDYARLLHTKGIRTTIYNFTRVGDEVRTY 65 +H D F+ + +S E + + + F Y L G+RT ++ + + + Sbjct: 29 LLHCYDLIDDFLDSINISFETFCQEFVGSWMFGYINALKEAGVRTVLFCISARVERPSRF 88 Query: 66 RHGIVDCTIKFIPVGRLYKSYCLI-----------------------PLSHR--TPI--- 97 H + I +P + Y+ Y + P+ TP+ Sbjct: 89 THIPTNTQICVLPPSQTYRPYRALRRKSLNVYGASTAQSFKEIQDNNPIRRSLLTPVKDL 148 Query: 98 GKFISQYISTIQKDLAGILRGDGVSLIYAQEYASGRFERLASTAKELNIPIIAAYHGGS- 156 K + Y+ T LA L+ + I QEY RF+ K IP+ A + GG Sbjct: 149 AKSVGTYLCTPLGLLAEELKRENCQAILCQEYEYARFDSCTLLGKMTGIPVFATFQGGDR 208 Query: 157 IHKWI-MPIKKHTLHKASFLTTLNEDEQKSMVSHFPHLAERIRLLPNFVNSAIFYKRDKE 215 W+ +P + + + + + E + + S + A +I + N V+ A + D+ Sbjct: 209 TQSWLEVPWRHLSFRNCAGVIVATQTEIQRIQSAYGIGASKIGQIFNPVDIATWQGSDRL 268 Query: 216 QALAELGLDPENRYLITVGRLFEYQKGHSLLVQAAEQL-RHIPD--LKILIAGGGPDEQS 272 QA EL + + R ++ GR+ +KG +L++A +Q+ PD L++LI G G D Sbjct: 269 QARKELDIPLDARVVVWHGRVEIERKGLDILLEAWQQICNQRPDINLRLLIVGTGSDAAQ 328 Query: 273 LRALIKEKNLEDRIILLGTIRNKDVLASYYSVSELFVLPSRYEGLPLVILEAGACGLPTV 332 L+ I L+ + L + ++ ++ Y S ++++ LPSR EG P+ LEA AC LP V Sbjct: 329 LQQRIASMQLKGVLWLNEFVSDRSIMQRYLSAADVYTLPSRQEGFPVAPLEAMACSLPVV 388 Query: 333 AFNVMGVRGLVQHG--VSGLLAEGLEPSALAASLDTLLGNPELCAEMGEAALQIVRSDYS 390 A + GV + G GL+ +ALA +L +L N E+G+ A Q V S ++ Sbjct: 389 AADAPGVPDIFAGGDISGGLVVPRENATALAQALAQVLDNEAWGRELGKRARQRVESYFA 448 Query: 391 EEIIGARLYNLL 402 +I+G +L + + Sbjct: 449 PQIVGKQLRDFI 460 >C4E5I7.1 C4E5I7_STRRS Glycosyltransferase Length = 388 Score = 122 bits (306), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 77/191 (40%), Positives = 111/191 (58%), Gaps = 7/191 (3%) Query: 226 ENRYLITVGRLFEYQKGHSLLVQAAEQ-LRHIPDLKILIAGGGPDEQSLRALIKEKNLED 284 ENR +I GRL QKG LL+ A +Q + H PD ++ I G GP + +LRAL+KE L D Sbjct: 202 ENRLVIAAGRLVA-QKGFDLLIPAFKQVVHHHPDWRLRIYGTGPKKAALRALVKEHRLAD 260 Query: 285 RIILLGTIRNKDVLASYYSVSELFVLPSRYEGLPLVILEAGACGLPTVAFNV-MGVRGLV 343 + L+G D L + + L+VL SR+EGLP+V++EA + LP VAF+ G R ++ Sbjct: 261 NVTLMG---RSDRLDEELAHASLYVLSSRFEGLPMVMIEAMSHALPVVAFDCPTGPRDVI 317 Query: 344 QHGVSGLLAEGLEPSALAASLDTLLGNPELCAEMGEAALQIVRSDYSEEIIGARLYNLLQ 403 G+ GLL + ALAA++ L+ + EL MG AA++ R DY+ E + L Sbjct: 318 TDGIDGLLVPPQDVDALAAAVSRLIADRELRRRMGAAAVRTAR-DYAPEAVTPLWERLFT 376 Query: 404 ESLGLDPSAAQ 414 E L +P AA+ Sbjct: 377 ELLRAEPPAAE 387 >Q4QJP3.1 Q4QJP3_HAEI8 Putative UDP-galactose--lipooligosaccharide galactosyltransferase EC=2.-.-.- Length = 353 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 70/171 (40%), Positives = 102/171 (59%), Gaps = 7/171 (4%) Query: 226 ENRYLITVGRLFEYQKGHSLLVQAAEQL-RHIPDLKILIAGGGPDEQSLRALIKEKNLED 284 EN+ +++VG LF Y KG L++ + L + PD + IAG G +E++L+ L K N+ED Sbjct: 180 ENKTVLSVGHLFSY-KGFDYLLKVWQVLAKKYPDWNLKIAGSGEEEENLKNLAKALNIED 238 Query: 285 RIILLGTIRNKDVLASYYSVSELFVLPSRYEGLPLVILEAGACGLPTVAFNVM-GVRGLV 343 + + R DV A YY S ++ LPS+ EGLPLV++EA A GLP VAFN GV+ LV Sbjct: 239 SVNFIP--RTNDV-AFYYESSSIYCLPSQTEGLPLVVIEAMAFGLPIVAFNCSPGVKQLV 295 Query: 344 QHGVSGLLAEGLEPSALAASLDTLLGNPELCAEMGEAALQIVRSDYSEEII 394 +H +G L E + LD L+ NPEL +M + + +++ DY E I Sbjct: 296 EHKENGFLCEQNNIEEMVKGLDLLINNPELYQQMSDKS-RLMSEDYGIEKI 345 >A8YP12.1 A8YP12_MICAE Genome sequencing data, contig C328 Length = 490 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 86/225 (38%), Positives = 119/225 (52%), Gaps = 10/225 (4%) Query: 196 RIRLLPNFVNSAIFYKRDKEQALAELGLDPENRYLITVGRLFEYQKGHSLLVQAAEQLRH 255 RI +P +N+A F E A +L +DPE ++ VGR F+ +KG LV A +L Sbjct: 212 RIETVPCGINAAHFGSVSPEIARQKLNIDPEMPVILYVGR-FDPRKGIETLVNACARL-P 269 Query: 256 IPDLKILIAG---GGPD---EQSLRALIKEKNLEDRIILLGTIRNKDVLASYYSVSELFV 309 P L L+ G GG D +Q +R L+K LE RII G + D L SYY+ +++ V Sbjct: 270 APWLLYLVGGSRSGGSDCQEQQRIRFLVKTLGLESRIIFTGRVSQTD-LPSYYAATDVCV 328 Query: 310 LPSRYEGLPLVILEAGACGLPTVAFNVMGVRGLVQHGVSGLLAEGLEPSALAASLDTLLG 369 +PS YE LV +EA A G P VA +V G+R V H +GLL ALA +L LL Sbjct: 329 VPSYYEPFGLVAIEAMAAGTPVVASDVGGLRHTVVHNRTGLLVPPRNAEALATALGELLA 388 Query: 370 NPELCAEMGEAALQIVRSDYSEEIIGARLYNLLQESLGLDPSAAQ 414 PE MG + V S +S + ++ +L Q SL L+ SA + Sbjct: 389 RPEKRQSMGRLGREWVESRFSSGAVARQILSLYQ-SLTLEKSAPE 432 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.140 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,576,933,633 Number of extensions: 108864775 Number of successful extensions: 300955 Number of sequences better than 1.0e-05: 5701 Number of HSP's gapped: 300064 Number of HSP's successfully gapped: 5705 Length of query: 428 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 289 Effective length of database: 1,751,175,118 Effective search space: 506089609102 Effective search space used: 506089609102 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)