BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0231.0017.p (428 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value O34703.1 O34703_BACSU Cell division cycle CDC48 homolog 507 e-142 Q5WKP6.1 Q5WKP6_BACSK Cell-division protein 453 e-125 Q7BUX4.1 Q7BUX4_BACSU YjoB protein (Fragment) 194 2e-47 A9B3B9.1 A9B3B9_HERA2 AAA ATPase central domain protein 149 6e-34 B2IUN1.1 B2IUN1_NOSP7 AAA ATPase, central domain protein 141 1e-31 >O34703.1 O34703_BACSU Cell division cycle CDC48 homolog Length = 423 Score = 507 bits (1305), Expect = e-142, Method: Compositional matrix adjust. Identities = 251/419 (59%), Positives = 311/419 (74%), Gaps = 3/419 (0%) Query: 11 IYKYDENATG-MIKGYDAYARLVDGILEALHTRYGVRYELYASDDPNSEYWKLLENDVQS 69 IY+Y+E GY + L+ I E L+ +YGV YELYASDDPN+EYW+LL DV+S Sbjct: 7 IYQYEEKENERAAAGYGTFGYLITRIEETLYDQYGVFYELYASDDPNTEYWELLVEDVRS 66 Query: 70 GHPGVEHVARIFDRLEDRTFVYDDDKEQPEYSIHLSIRNNVLAYPEMGVALARVPVFQEN 129 G EHVA IF++LE +TF YD+D+++P+Y++H SIRN+V AYPE GVA AR+P FQ+ Sbjct: 67 GSLEPEHVAYIFEKLEKKTFAYDEDEKEPDYTVHKSIRNSVYAYPEKGVAFARIPYFQDG 126 Query: 130 GINFQDYVFAASDGQLQGFLGNVRKRQREQNINKVTVFTDRRNGIFREDEPITRSVGREA 189 I D +FA +D +++ FL VR R E++ KVTVFTD G RE E I R V R Sbjct: 127 SIMSFDCLFAVNDEKMRAFLEGVRPRLWEKSKRKVTVFTDGDGGTSREQEAIVREVQRSQ 186 Query: 190 VVLEAGIKKEIYRSLDQFFDSDRSFYVTYDIPYKRGILLYGHPGNGKTTLVKSIAGSVPG 249 V++ +KKEIYRS+DQFF SD+SFY TYDIPYKRGILLYG PGNGKTTLVKSIAGS+ Sbjct: 187 VIMNPLLKKEIYRSIDQFFHSDKSFYQTYDIPYKRGILLYGPPGNGKTTLVKSIAGSIDA 246 Query: 250 PVVYWQITEYTSSESVNEVFEAAARLAPMVLVIEDIDSMPQEVRSFFLNTLDGATSKEGI 309 PV YWQITE+TSSE++ EVF+AA RLAP VLVIEDIDSMP++VRSFFLNTLDGATSKEG+ Sbjct: 247 PVAYWQITEFTSSETIEEVFQAARRLAPAVLVIEDIDSMPEDVRSFFLNTLDGATSKEGL 306 Query: 310 FLIGTTNYPEKIDPGLMNRAGRFDRAYEIKMPDEELRLEYLKLRXXXXXXXXXXXXXXXR 369 FLIGTTNYPE+IDPGLMNRAGRFDRAYEI +PDEELRLEY+K+R + Sbjct: 307 FLIGTTNYPEEIDPGLMNRAGRFDRAYEIGLPDEELRLEYMKMRGFGIFLSEGEIKNAAK 366 Query: 370 LTADFSLTQLGELYVSAALEWHENGRADVEALVRGMRGELDKGRKREWLKDASSTIGFY 428 LT FS QLGELYVS+AL+WH+ G +E +V+ M GE K ++ W++ + +GF+ Sbjct: 367 LTEGFSFAQLGELYVSSALQWHQEGNHHIETMVKDMTGEQRKSQRGSWME--RNKVGFH 423 >Q5WKP6.1 Q5WKP6_BACSK Cell-division protein Length = 420 Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust. Identities = 215/419 (51%), Positives = 294/419 (70%), Gaps = 1/419 (0%) Query: 10 VIYKYDENATGMIKGYDAYARLVDGILEALHTRYGVRYELYASDDPNSEYWKLLENDVQS 69 IY+ + +KGY YARL+ GI +AL YG +E Y +DD + E W + E DV++ Sbjct: 3 CIYEQSADQKNDVKGYPGYARLIGGIQDALFAAYGKTFEPYQTDDAHFELWTIFEEDVKN 62 Query: 70 GHPGVEHVARIFDRLEDRTFVYDDDKEQPEYSIHLSIRNNVLAYPEMGVALARVPVFQEN 129 +P VEHVA+IFD+LE +TF YD++ +P Y +H +++NNV AY + G+A AR+PVF ++ Sbjct: 63 ENPEVEHVAKIFDKLETQTFEYDEEAREPVYRVHRALQNNVYAYKKAGIAFARIPVFDDS 122 Query: 130 GINFQDYVFAASDGQLQGFLGNVRKRQREQNINKVTVFTDRRNGIFREDEPITRSVGREA 189 I + V A S +++ FL +R R ++ N+V VF + +G +E +P+TR++ RE Sbjct: 123 SIMYMQCVLATSPLEMENFLQTLRNRLWHKSRNEVLVFKEGMDGFVQEQQPVTRAISREE 182 Query: 190 VVLEAGIKKEIYRSLDQFFDSDRSFYVTYDIPYKRGILLYGHPGNGKTTLVKSIAGSVPG 249 VVL A +K+EIY+ LD FF DRSF+ ++IPYKRGILLYG PGNGKTTLVKSIAG+V Sbjct: 183 VVLRADVKEEIYQMLDHFFAEDRSFFTKFNIPYKRGILLYGPPGNGKTTLVKSIAGTVDA 242 Query: 250 PVVYWQITEYTSSESVNEVFEAAARLAPMVLVIEDIDSMPQEVRSFFLNTLDGATSKEGI 309 PV YWQITE+TSSES+++VFE+A RLAPM+LVIEDIDSMP+E RS+FLNTLDGATSKEGI Sbjct: 243 PVAYWQITEFTSSESISQVFESATRLAPMILVIEDIDSMPEEARSYFLNTLDGATSKEGI 302 Query: 310 FLIGTTNYPEKIDPGLMNRAGRFDRAYEIKMPDEELRLEYLKLRXXXXXXXXXXXXXXXR 369 FLIGTTNYPE+IDPGL+NRAGRFDR YEI +P++ELR Y+K+ Sbjct: 303 FLIGTTNYPEEIDPGLINRAGRFDRGYEIPLPNKELRHRYVKVLNFQTVVQGADLDKIVS 362 Query: 370 LTADFSLTQLGELYVSAALEWHENGRADVEALVRGMRGELDKGRKREWLKDASSTIGFY 428 T FS Q+ EL+++AA+E H G+ D+ L++ M+ E K + +W + +GF+ Sbjct: 363 ETEGFSFAQIKELFIAAAMEQHAAGKVDINKLIKSMKKEQKKSKTGKWW-EGGDELGFH 420 >Q7BUX4.1 Q7BUX4_BACSU YjoB protein (Fragment) Length = 149 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 93/150 (62%), Positives = 114/150 (76%), Gaps = 2/150 (1%) Query: 279 VLVIEDIDSMPQEVRSFFLNTLDGATSKEGIFLIGTTNYPEKIDPGLMNRAGRFDRAYEI 338 VLVIEDIDSMP++VRSFFLNTLDGATSKEG+FLIGTTNYPE+IDPGLMNRAGRFDRAYEI Sbjct: 2 VLVIEDIDSMPEDVRSFFLNTLDGATSKEGLFLIGTTNYPEEIDPGLMNRAGRFDRAYEI 61 Query: 339 KMPDEELRLEYLKLRXXXXXXXXXXXXXXXRLTADFSLTQLGELYVSAALEWHENGRADV 398 +PDEELRLEY+K+R +LT FS QLGELYVS+AL+WH+ G + Sbjct: 62 GLPDEELRLEYMKMRGFGIFLSEGEIKNAAKLTEGFSFAQLGELYVSSALQWHQEGNHHI 121 Query: 399 EALVRGMRGELDKGRKREWLKDASSTIGFY 428 E +V+ M GE K ++ W++ + +GF+ Sbjct: 122 ETMVKDMTGEQRKSQRGSWME--RNKVGFH 149 >A9B3B9.1 A9B3B9_HERA2 AAA ATPase central domain protein Length = 416 Score = 149 bits (375), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 85/263 (32%), Positives = 143/263 (54%), Gaps = 10/263 (3%) Query: 136 YVFAASDGQLQGFLGNVRKRQREQNINKVTVFTDRRNGIFREDEPITRSVGREAVVLEAG 195 ++ AS ++ F V E +++ VF + +E ++ + ++L Sbjct: 115 WLIGASQAAVEAFFSAVCDWNTEIR-DEIMVFDEGSWEKSQELYYAIKNASLDNLILPGT 173 Query: 196 IKKEIYRSLDQFFDSDRSFYVTYDIPYKRGILLYGHPGNGKTTLVKSIAGSVPGPVVY-- 253 +K++I+R L +FF+S ++ Y Y+I +KRGI+L G PGNGKT ++K + ++ P +Y Sbjct: 174 LKQDIFRDLQRFFES-KATYEHYNIAWKRGIILVGPPGNGKTHMIKGLLNALDYPCLYVK 232 Query: 254 -WQITEYTSSESVNEVFEAAARLAPMVLVIEDIDSMPQEV-RSFFLNTLDGATSKEGIFL 311 + T++ ++ VF+ A R AP ++V+ED+DS+ + R+FFLN +DG + +G+ L Sbjct: 233 SFDAQYSTNNANIRAVFDRARRSAPCIVVLEDLDSLINDTNRAFFLNEVDGFNANQGVVL 292 Query: 312 IGTTNYPEKIDPGLMNRAGRFDRAYEIKMPDEELRLEYLKLRXXXXXXXXXXX----XXX 367 + TTN+PE IDP +MNR RFDR Y +P+ RL Y++ Sbjct: 293 LATTNHPEDIDPAIMNRPSRFDRKYYFSLPELAERLAYIEQWNTALHSSTQLTEAGIQQA 352 Query: 368 XRLTADFSLTQLGELYVSAALEW 390 +T FS L EL+VSA + W Sbjct: 353 AEVTEGFSFAYLKELFVSALMRW 375 >B2IUN1.1 B2IUN1_NOSP7 AAA ATPase, central domain protein Length = 408 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 85/216 (39%), Positives = 119/216 (55%), Gaps = 9/216 (4%) Query: 183 RSVGREAVVLEAGIKKEIYRSLDQFFDSDRSFYVTYDIPYKRGILLYGHPGNGKTTLVKS 242 +S E +VL +K++I L FF S R Y Y + +KRGIL G PGNGKT VK+ Sbjct: 159 QSSTFENLVLHKTLKQDIQDDLINFFTS-RETYANYSVLWKRGILFIGSPGNGKTHTVKA 217 Query: 243 IAGSVPGPVVYWQI--TEY-TSSESVNEVFEAAARLAPMVLVIEDIDSMPQ-EVRSFFLN 298 + + P +Y + +EY T S+++ +VF+ A + AP VLV+EDIDS+ E RSFFLN Sbjct: 218 LINQMQQPCLYVKSFKSEYATDSDNIRKVFKQARQSAPCVLVLEDIDSLLNDENRSFFLN 277 Query: 299 TLDGATSKEGIFLIGTTNYPEKIDPGLMNRAGRFDRAYEIKMPDEELRLEYLKLRXXXXX 358 LDG S EGI + TTN+PE++D + +R RFDR Y +P R Y++L Sbjct: 278 ELDGFASNEGIVTLATTNHPERLDSAISDRPSRFDRKYHFDLPAFPERETYIRLWNDKLN 337 Query: 359 X----XXXXXXXXXRLTADFSLTQLGELYVSAALEW 390 LT FS L EL++S+ + W Sbjct: 338 SEMGLSEQAVSHIAALTEGFSFAYLKELFLSSMIRW 373 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.137 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,549,159,556 Number of extensions: 107440316 Number of successful extensions: 393821 Number of sequences better than 1.0e-05: 5949 Number of HSP's gapped: 382697 Number of HSP's successfully gapped: 6536 Length of query: 428 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 289 Effective length of database: 1,751,175,118 Effective search space: 506089609102 Effective search space used: 506089609102 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)