BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0231.0014.p
         (101 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1DIL6.1 B1DIL6_9BACL Transcriptional regulator, HxlR family          137   2e-31
A3I9I7.1 A3I9I7_9BACI Putative uncharacterized protein                137   4e-31
B1HYS2.1 B1HYS2_LYSSC Possible transcriptional regulator              134   2e-30
C3HL85.1 C3HL85_BACTU Putative uncharacterized protein                131   2e-29
C3E5Z0.1 C3E5Z0_BACTU Putative uncharacterized protein                131   2e-29

>B1DIL6.1 B1DIL6_9BACL Transcriptional regulator, HxlR family
          Length = 111

 Score =  137 bits (346), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 63/91 (69%), Positives = 78/91 (85%)

Query: 1   MDIIGRRWTGLIIYQLLQGPQRFSVIEAALPVSGRLLSERLKELEQEGIVLREVFPETPV 60
           MD+IG+RW GLIIYQLL GPQRF  ++AALP+SGRLLSER K+LE EGIV R V+PE PV
Sbjct: 14  MDLIGKRWIGLIIYQLLAGPQRFCAVQAALPISGRLLSERFKDLENEGIVTRVVYPEIPV 73

Query: 61  RIQYSLTDKGRALESVIRDLQQWSDSWITAE 91
           RI+YSLT+KGRALE V+R++++WS  WI+ E
Sbjct: 74  RIEYSLTEKGRALEPVVREIEKWSQEWISLE 104


>A3I9I7.1 A3I9I7_9BACI Putative uncharacterized protein
          Length = 101

 Score =  137 bits (344), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 62/88 (70%), Positives = 79/88 (89%)

Query: 1   MDIIGRRWTGLIIYQLLQGPQRFSVIEAALPVSGRLLSERLKELEQEGIVLREVFPETPV 60
           MD+IG+RWTGLI+YQLL GPQRF+ IE+ALPVSGRLLSERLKELE+EG+V R+V+ E PV
Sbjct: 14  MDLIGKRWTGLILYQLLDGPQRFNEIESALPVSGRLLSERLKELEKEGLVERKVYSEVPV 73

Query: 61  RIQYSLTDKGRALESVIRDLQQWSDSWI 88
           R++YSLTDKG+ALE  IR+++ W+ SW+
Sbjct: 74  RVEYSLTDKGQALEGAIRNIETWASSWL 101


>B1HYS2.1 B1HYS2_LYSSC Possible transcriptional regulator
          Length = 101

 Score =  134 bits (338), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 61/88 (69%), Positives = 78/88 (88%)

Query: 1   MDIIGRRWTGLIIYQLLQGPQRFSVIEAALPVSGRLLSERLKELEQEGIVLREVFPETPV 60
           MD+IG+RWTGLI+YQLL G QRF+ IE+ALPVSGRLLSERLKELE+EG+V R+V+ E PV
Sbjct: 14  MDLIGKRWTGLILYQLLDGSQRFNEIESALPVSGRLLSERLKELEKEGLVERKVYSEVPV 73

Query: 61  RIQYSLTDKGRALESVIRDLQQWSDSWI 88
           R++YSLTDKG+ALE  IR+++ W+ SW+
Sbjct: 74  RVEYSLTDKGQALEGAIRNIETWASSWL 101


>C3HL85.1 C3HL85_BACTU Putative uncharacterized protein
          Length = 105

 Score =  131 bits (329), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 63/92 (68%), Positives = 74/92 (80%)

Query: 1   MDIIGRRWTGLIIYQLLQGPQRFSVIEAALPVSGRLLSERLKELEQEGIVLREVFPETPV 60
           M    +RWT LIIYQL  GPQRF  +E++LPVSGRLLSERLKELE EGIV R+VFPETPV
Sbjct: 14  MKFFSQRWTALIIYQLFSGPQRFCTLESSLPVSGRLLSERLKELELEGIVERKVFPETPV 73

Query: 61  RIQYSLTDKGRALESVIRDLQQWSDSWITAEE 92
           RI+YSLT KG ALE++IR +++WS  WI  EE
Sbjct: 74  RIEYSLTQKGFALEAIIRGIEEWSQEWIELEE 105


>C3E5Z0.1 C3E5Z0_BACTU Putative uncharacterized protein
          Length = 105

 Score =  131 bits (329), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 63/92 (68%), Positives = 74/92 (80%)

Query: 1   MDIIGRRWTGLIIYQLLQGPQRFSVIEAALPVSGRLLSERLKELEQEGIVLREVFPETPV 60
           M    +RWT LIIYQL  GPQRF  +E++LPVSGRLLSERLKELE EGIV R+VFPETPV
Sbjct: 14  MKFFSQRWTALIIYQLFSGPQRFCTLESSLPVSGRLLSERLKELELEGIVERKVFPETPV 73

Query: 61  RIQYSLTDKGRALESVIRDLQQWSDSWITAEE 92
           RI+YSLT KG ALE++IR +++WS  WI  EE
Sbjct: 74  RIEYSLTQKGFALEAIIRGIEEWSQEWIELEE 105


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.320    0.137    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 591,581,217
Number of extensions: 20456075
Number of successful extensions: 73379
Number of sequences better than 1.0e-05: 2454
Number of HSP's gapped: 71911
Number of HSP's successfully gapped: 2457
Length of query: 101
Length of database: 3,060,696,203
Length adjustment: 69
Effective length of query: 32
Effective length of database: 2,410,646,168
Effective search space: 77140677376
Effective search space used: 77140677376
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)