BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0231.0009.p (364 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KAY0.1 B3KAY0_9BACI Peptidase M24 382 e-104 C0ZB31.1 C0ZB31_BREBN Putative Xaa-Pro dipeptidase/Xaa-Pro amino... 382 e-104 C0ZBN0.1 C0ZBN0_BREBN Putative Xaa-Pro dipeptidase/Xaa-Pro amino... 327 9e-88 B4BPP8.1 B4BPP8_9BACI Peptidase M24 314 1e-83 C3IXR1.1 C3IXR1_9BACI Peptidase M24 314 1e-83 >B3KAY0.1 B3KAY0_9BACI Peptidase M24 Length = 309 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 188/309 (60%), Positives = 233/309 (75%), Gaps = 1/309 (0%) Query: 54 VLIVPXXXXXXXXXXSSVTKILTHSDTDNPYELLKSCFAGSKPGTVGIEKEHFTVNRYEQ 113 +LIVP S+V I+TH DTDNPY LLK GS GT+ +EK+ TV+RYEQ Sbjct: 1 MLIVPALDANAAEAASTVKNIVTHQDTDNPYLLLKEQIQGSA-GTLALEKDQLTVSRYEQ 59 Query: 114 LAEAVPADAFRDIGHLLRSMRAKKTPDEVSRMKHAAELVEEVLRQGLTHVKAGVSEIELV 173 L + V AD D+G LR +R +K+ +EV +K+A LVE+VL QG+ VK G+SE+ELV Sbjct: 60 LRQHVNADRIEDVGIALRDLRIRKSAEEVKIIKNAVRLVEDVLTQGMARVKIGISELELV 119 Query: 174 AELEYLMKKVGASGPSFDTMVLSGPNTALPHGVPGSRIIQPGDFLMFDLGVYAAGYASDI 233 AELEYLMKK+GA PSF TMVLSGPNTALPHGVPG+R I+ GD LMFDLGVYA GYASDI Sbjct: 120 AELEYLMKKLGADAPSFATMVLSGPNTALPHGVPGARRIEAGDLLMFDLGVYAGGYASDI 179 Query: 234 TRTFAVEEAHPKLVEIYNTVLAANEAGIAASRAGATFGSVDRAAREVIEASGYGEYFIHR 293 TRTFAV + P+ V IY TVLAAN AGI A + G T+GS+D+AAR+VI+ +GYG F+HR Sbjct: 180 TRTFAVGDLKPEAVNIYETVLAANLAGIQAVKPGVTYGSIDQAARKVIDDAGYGHAFVHR 239 Query: 294 VGHGLGMDTHEYPSLHGMNGDFIETGNVFTVEPGIYVAGLGGVRIEDDVWITPEGPQTLT 353 +GHGLGMD HEYPS+HG+N D ++ G VFT+EPGIY+ G+GGVRIEDDV +T +G + LT Sbjct: 240 LGHGLGMDVHEYPSVHGLNQDILQPGAVFTIEPGIYLQGVGGVRIEDDVIVTGDGVEVLT 299 Query: 354 TMSKALTVL 362 + K LTV+ Sbjct: 300 SFPKELTVI 308 >C0ZB31.1 C0ZB31_BREBN Putative Xaa-Pro dipeptidase/Xaa-Pro aminopeptidase Length = 364 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 196/363 (53%), Positives = 250/363 (68%), Gaps = 1/363 (0%) Query: 1 MNEALSTLEQGMAGGGLDALLVTDPKHVYYLTGFASNPHERFLGLLLIRGGEPVLIVPXX 60 E +S L + L+A+L+T PKHVYYLTGF ++PHERF+GL++ G+P LIVP Sbjct: 2 FQERISKLHTFLTEQELNAVLITSPKHVYYLTGFFTDPHERFMGLVIPAEGKPSLIVPAL 61 Query: 61 XXXXXXXXSSVTKILTHSDTDNPYELLKSCFAGSKPGTVGIEKEHFTVNRYEQLAEAVPA 120 S V I TH+D NPYE+LK + +GIEK H TV RYE L + V A Sbjct: 62 DREAAAEASFVQDIHTHTDIQNPYEILKQVLPANL-AKLGIEKSHMTVERYEALGQVVLA 120 Query: 121 DAFRDIGHLLRSMRAKKTPDEVSRMKHAAELVEEVLRQGLTHVKAGVSEIELVAELEYLM 180 ++ D+ LR MR K+ DEV R+KHA +LVE+ LR+ L VK G++E E+VAELE+ M Sbjct: 121 SSYVDVEEPLREMRLIKSADEVDRLKHAVQLVEDSLRETLKKVKTGMTETEIVAELEFQM 180 Query: 181 KKVGASGPSFDTMVLSGPNTALPHGVPGSRIIQPGDFLMFDLGVYAAGYASDITRTFAVE 240 K++GA GPSF +MVL+G +ALPHG PG+R +Q GD L+FD+GV A GY SDITRTFAV Sbjct: 181 KRLGAEGPSFTSMVLAGEKSALPHGKPGTRQVQEGDLLLFDIGVAANGYVSDITRTFAVG 240 Query: 241 EAHPKLVEIYNTVLAANEAGIAASRAGATFGSVDRAAREVIEASGYGEYFIHRVGHGLGM 300 + +L EIY TVLAANEA IA R G TF +D+ AR+VI A GYGEYF+HR+GHGLGM Sbjct: 241 KISAQLQEIYETVLAANEAAIAEIRPGVTFAHLDKTARDVITAKGYGEYFMHRLGHGLGM 300 Query: 301 DTHEYPSLHGMNGDFIETGNVFTVEPGIYVAGLGGVRIEDDVWITPEGPQTLTTMSKALT 360 D HEYPS+H N + + G VFT+EPGIY+ G+GGVRIEDDV +T G + LT K LT Sbjct: 301 DVHEYPSVHSQNQEVLRPGMVFTIEPGIYLPGVGGVRIEDDVLVTETGVEILTQFPKKLT 360 Query: 361 VLH 363 ++ Sbjct: 361 SIN 363 >C0ZBN0.1 C0ZBN0_BREBN Putative Xaa-Pro dipeptidase/Xaa-Pro aminopeptidase Length = 362 Score = 327 bits (839), Expect = 9e-88, Method: Compositional matrix adjust. Identities = 170/362 (46%), Positives = 224/362 (61%), Gaps = 1/362 (0%) Query: 1 MNEALSTLEQGMAGGGLDALLVTDPKHVYYLTGFASNPHERFLGLLLIRGGEPVLIVPXX 60 M E L L M LDALL+T PK+VYY TGF + PHERF+GL+L+RG P L VP Sbjct: 1 MQERLEKLHAYMESRKLDALLITHPKNVYYFTGFLTEPHERFMGLVLVRGESPFLFVPLL 60 Query: 61 XXXXXXXXSSVTKILTHSDTDNPYELLKSCFAGSKPGTVGIEKEHFTVNRYEQLAEAVPA 120 I TH D+ + +LK S +G+EK H T YE L V A Sbjct: 61 DADKAREACPAIMIYTHDDSQDALTVLKHLLPASL-SHIGVEKNHLTAKTYEALVSIVNA 119 Query: 121 DAFRDIGHLLRSMRAKKTPDEVSRMKHAAELVEEVLRQGLTHVKAGVSEIELVAELEYLM 180 D+G LL S+R K E++ +K A ++EE LR+ L + G++E+++VAELEY M Sbjct: 120 TEAVDVGDLLCSIRVAKDASEIATIKRAIWVMEESLRRTLPLISIGMTELDVVAELEYQM 179 Query: 181 KKVGASGPSFDTMVLSGPNTALPHGVPGSRIIQPGDFLMFDLGVYAAGYASDITRTFAVE 240 KK+ A GPSF T+VL+G ALPHG PG R+IQ G+ L+ D GVY GY SD+TRTFAV Sbjct: 180 KKLKAQGPSFSTIVLAGEKAALPHGDPGDRVIQAGEVLLIDAGVYVDGYVSDLTRTFAVG 239 Query: 241 EAHPKLVEIYNTVLAANEAGIAASRAGATFGSVDRAAREVIEASGYGEYFIHRVGHGLGM 300 + +L+++Y+TVL AN AGI A GA VD AAR VI GYGE+FI+RVGHG+G+ Sbjct: 240 KLGTELLDMYDTVLQANRAGIQAIWPGAPIADVDLAARAVIADRGYGEFFINRVGHGIGL 299 Query: 301 DTHEYPSLHGMNGDFIETGNVFTVEPGIYVAGLGGVRIEDDVWITPEGPQTLTTMSKALT 360 + HE P +H + G VFT+EPGIY +GG+RIED+V +T EG + LT+ K L Sbjct: 300 ELHEAPYVHSQAAGELIPGMVFTIEPGIYNTQIGGIRIEDNVLVTKEGVEVLTSFPKELQ 359 Query: 361 VL 362 ++ Sbjct: 360 II 361 >B4BPP8.1 B4BPP8_9BACI Peptidase M24 Length = 364 Score = 314 bits (804), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 158/364 (43%), Positives = 220/364 (60%), Gaps = 2/364 (0%) Query: 1 MNEALSTLEQGMAGGGLDALLVTDPKHVYYLTGFASNPHERFLGLLLIRGGEPVLIVPXX 60 MN+ L +L + +T +V+YL+GF +PHER L LL+ GEPVL+ P Sbjct: 1 MNQRLKSLSLWLQHHDDSFAFITSSANVFYLSGFWCDPHERLLALLVFPDGEPVLVCPQM 60 Query: 61 XXXXXXXXSSVTKILTHSDTDNPYELLKSCFAGS--KPGTVGIEKEHFTVNRYEQLAEAV 118 ++ + D+ +P+E + G T+ +EK H + R+EQL+ Sbjct: 61 EIARARRAGWGYAVIGYDDSTDPWEEIHRHLQGRAITANTIAVEKSHLSFARFEQLSALF 120 Query: 119 PADAFRDIGHLLRSMRAKKTPDEVSRMKHAAELVEEVLRQGLTHVKAGVSEIELVAELEY 178 P + D LR +R K E+ R++ AAEL + + G++ ++ GV+E+ELVA +EY Sbjct: 121 PNVQWLDAEETLRQLRLIKDEQEMKRLRQAAELADRAIEIGVSAIRPGVTELELVAVIEY 180 Query: 179 LMKKVGASGPSFDTMVLSGPNTALPHGVPGSRIIQPGDFLMFDLGVYAAGYASDITRTFA 238 +KK+G G SF T VL+G TA PHGVPGS + GDF++FDLGV GY SDITRT Sbjct: 181 ELKKLGVEGMSFPTTVLTGARTADPHGVPGSAAVASGDFILFDLGVIVDGYCSDITRTVV 240 Query: 239 VEEAHPKLVEIYNTVLAANEAGIAASRAGATFGSVDRAAREVIEASGYGEYFIHRVGHGL 298 + A + IY+TVL A +A I A R G++DRAAR VIE +GYG YF HRVGHGL Sbjct: 241 CQTASDEQRLIYDTVLRAQQAAIDACRPQTALGAIDRAARSVIEQAGYGPYFTHRVGHGL 300 Query: 299 GMDTHEYPSLHGMNGDFIETGNVFTVEPGIYVAGLGGVRIEDDVWITPEGPQTLTTMSKA 358 G++ HE+PSLHG N + + G VFT+EPGIYV +GGVRIEDD+ +T G + LT+ SK Sbjct: 301 GIEVHEHPSLHGANEELLVPGMVFTIEPGIYVPAIGGVRIEDDIAVTDSGGEVLTSFSKE 360 Query: 359 LTVL 362 L ++ Sbjct: 361 LIIV 364 >C3IXR1.1 C3IXR1_9BACI Peptidase M24 Length = 364 Score = 314 bits (804), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 158/364 (43%), Positives = 221/364 (60%), Gaps = 2/364 (0%) Query: 1 MNEALSTLEQGMAGGGLDALLVTDPKHVYYLTGFASNPHERFLGLLLIRGGEPVLIVPXX 60 MN+ L + +T +V+YL+GF +PHER L LL+ GEP L+ P Sbjct: 1 MNQRLDAFSSWLQHHDDSFAFITSSANVFYLSGFFCDPHERLLALLVFPDGEPALVCPQM 60 Query: 61 XXXXXXXXSSVTKILTHSDTDNPYELLKSCFA--GSKPGTVGIEKEHFTVNRYEQLAEAV 118 ++ + D+ +P+E + G+KPG + IEK H + R+E+L+ Sbjct: 61 EVPRARRSGFGYTVIGYDDSTDPWEEIGRHLEARGAKPGLIAIEKNHLSFARFERLSALF 120 Query: 119 PADAFRDIGHLLRSMRAKKTPDEVSRMKHAAELVEEVLRQGLTHVKAGVSEIELVAELEY 178 P A+ D LR +R K E+ ++ AAEL ++ + G++ ++ GV+E+ELVA +EY Sbjct: 121 PNAAWNDAEEKLRQLRLIKDEQEMKVLRQAAELADKAIEIGVSAIRPGVTELELVAVIEY 180 Query: 179 LMKKVGASGPSFDTMVLSGPNTALPHGVPGSRIIQPGDFLMFDLGVYAAGYASDITRTFA 238 +KK+G G SF T VL+G +A PHGVPG+ + PGDF++FDLGV GY SDITRT Sbjct: 181 ELKKLGVEGMSFPTTVLTGAKSADPHGVPGTAAVAPGDFVLFDLGVIVDGYCSDITRTVV 240 Query: 239 VEEAHPKLVEIYNTVLAANEAGIAASRAGATFGSVDRAAREVIEASGYGEYFIHRVGHGL 298 + A + IY+TV A +A I A R G +DRAAR VIE +GYG+YF HRVGHGL Sbjct: 241 CQTASDEQRLIYDTVRRAQQAAIDACRPQTAMGEIDRAARNVIEQAGYGDYFTHRVGHGL 300 Query: 299 GMDTHEYPSLHGMNGDFIETGNVFTVEPGIYVAGLGGVRIEDDVWITPEGPQTLTTMSKA 358 G++ HEYPSLHG N + + G VFT+EPGIYV +GGVRIEDDV +T G + LT+ SK Sbjct: 301 GIEIHEYPSLHGANNEPLAPGMVFTIEPGIYVPSIGGVRIEDDVAVTDHGVEVLTSFSKE 360 Query: 359 LTVL 362 L ++ Sbjct: 361 LIIV 364 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.136 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,175,464,406 Number of extensions: 89959419 Number of successful extensions: 236761 Number of sequences better than 1.0e-05: 5613 Number of HSP's gapped: 229539 Number of HSP's successfully gapped: 5621 Length of query: 364 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 227 Effective length of database: 1,770,017,148 Effective search space: 401793892596 Effective search space used: 401793892596 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)