BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0231.0007.p (562 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1HX65.1 B1HX65_LYSSC Methyl-accepting chemotaxis protein 236 6e-60 C2UCX1.1 C2UCX1_BACCE Methyl-accepting chemotaxis protein 200 3e-49 C2R739.1 C2R739_BACCE Methyl-accepting chemotaxis protein 200 3e-49 C2Y9M3.1 C2Y9M3_BACCE Methyl-accepting chemotaxis protein 200 4e-49 Q81EH1.1 Q81EH1_BACCR Methyl-accepting chemotaxis protein 200 4e-49 >B1HX65.1 B1HX65_LYSSC Methyl-accepting chemotaxis protein Length = 560 Score = 236 bits (601), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 155/509 (30%), Positives = 266/509 (52%), Gaps = 4/509 (0%) Query: 30 SFYFISINTINSYVMPQINKLLTSAAQDIYKNMNATHAQQTLNKNEQSRTTLEFYFQDKR 89 + + ++ I+ Y++PQ + LT D ++ + + N+ + L D + Sbjct: 29 AIFIVAERLIDGYIIPQFEESLTMKMDD-FEELFDKELINSAKTNKSAYQELLSRGNDFQ 87 Query: 90 KQHDLETIFLIDLKEGKATVL-TADHGAGLKPDESIEVQPAMEQAAKGKAGLSEIYSDSH 148 K+++LE ++++ + K +L + L P + Q A K S+IY D + Sbjct: 88 KEYELENVYIMSKVDNKEVILFLGNDDKYLSPLAFTDEQKAALDTTKMVT--SDIYIDDY 145 Query: 149 GIHKTAYVGVPGTTMVIGASSDVAFVKDKMSSILWTSAGITLAVLIVGVGSALLMTRRIT 208 G HK+ ++ VPGT V+G D F+ D + ++ + L ++V A +RI+ Sbjct: 146 GAHKSTFLQVPGTDSVLGLDEDADFIVDLENLLIKVCVLLALIFIVVSGILAYFTAKRIS 205 Query: 209 HPITQLAAYSNKLAGGDFTQQLEIKGSDEVGQLAESFRTMSQQLKEMIGQVLDTSSIVVA 268 P+ +L Y+ +A GD TQ+++ +DE+GQLA SF +M QLKE+IG V T+ V + Sbjct: 206 KPLNELVDYTKVIAAGDLTQEIKNTSNDEIGQLASSFNSMQVQLKEVIGHVSSTADYVAS 265 Query: 269 DSNDLKGRTDILNGMAEQSSLSVXXXXXXXXXXXXXXQDNSRAMDEINTGIQHIASAAGE 328 S +L + + MA Q S ++ N A+ EI+ GI I + Sbjct: 266 GSKELTQSIEQVTEMANQVSAAIQEVSVSSEMVTTGAIQNQIAIREISEGIVEITESTTN 325 Query: 329 VTEQIIEASEEATGGNDIAQSAVEQMRQVAEASVKSLEQFRIMNERSLQIGEVVQGITEI 388 V+++ I SEE+ GN + Q +V+ + + E S S++ M+ RS ++G++ IT I Sbjct: 326 VSDESIRTSEESNQGNHVIQQSVQGIDSINELSKASMQMTEQMHRRSKEVGQITNVITSI 385 Query: 389 TKQIQMLSLNASIEAARAGEHGRGFAVVAGEVRKLSEQSKESNEQIREFLLSLQEDMNRS 448 + QI +L+LNA+IEAARAGE+G+GFAVVA E+R L+EQS +S I + + +Q + N S Sbjct: 386 SDQINLLALNAAIEAARAGEYGKGFAVVADEIRHLAEQSAQSANDITKLISEMQNNSNES 445 Query: 449 VEEMNHVNAEVASGVGKVAEAGNAFSHLLILIQSINHSIQSVSAATQQISAGTEEVSASV 508 VE + V E+ + AG+ F + LI +I+ QS+++ +QISA +E+V + Sbjct: 446 VEAITRVVDEINHETIAIRLAGDTFQKISSLISNISMRTQSIASTVEQISASSEQVLGTT 505 Query: 509 EETAQITSKSRQNADTLAANSERQRQELE 537 E T Q ++ +A+ + Q +E Sbjct: 506 ETTVQSLEQTSAGTQNIASTMQEQSAFME 534 >C2UCX1.1 C2UCX1_BACCE Methyl-accepting chemotaxis protein Length = 660 Score = 200 bits (508), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 147/457 (32%), Positives = 240/457 (52%), Gaps = 23/457 (5%) Query: 94 LETIFLIDL-KEGKATVLTADHGAGLKPDESIEVQPAMEQAAKGKAGLSEIYSDSHGIHK 152 L+T LI++ K+G A +L P E + E+AA A +IY D+HG Sbjct: 189 LKTSKLINIGKKGYAFILDGKQKIIAHPQE-----KSGEKAADSWA--KKIYEDNHGAFS 241 Query: 153 TAYVGVPG---------TTMVIGASSDVAFVKDKMSSILWTSAGITLAVLIVGVGSALLM 203 +Y G T IG + + V + + + + L L+VG + Sbjct: 242 YSYGGSEKNMVFATNVKTGWKIGGTMYSSEVIEAAQPVFYNMLIVMLISLVVGGALIYFV 301 Query: 204 TRRITHPITQLAAYSNKLAGGDFTQQLEIKGSDEVGQLAESFRTMSQQLKEMIGQVLDTS 263 T IT P+ +L S +++ GD TQ +EI +DE+GQLA+ F M+ L+ +IG++ D++ Sbjct: 302 TLSITKPLKRLVVTSKEISEGDLTQTIEIHSNDEIGQLAKGFNEMTNSLRTLIGRINDSA 361 Query: 264 SIVVADSNDLKGRTDILNGMAEQSSLSVXXXXXXXXXXXXXXQDNSRAMDEINTGIQHIA 323 V A S +L + EQ ++++ ++ + + ++ GIQH+A Sbjct: 362 GHVAAASEELTASVRQASEATEQITIAMDEISSGATTQTTSVENGAMLLFDVTEGIQHVA 421 Query: 324 SAAGEVTEQIIEASEEATGGNDIAQSAVEQMRQVAEASVKSLEQFRIMNERSLQIGEVVQ 383 +++ + E+A G + V QM+ +AE+ +S +++N +S QIG++++ Sbjct: 422 NSSSSINTASAHTREKAEDGGKLVGRTVNQMQSIAESVSQSDAVIQLLNNKSKQIGDILE 481 Query: 384 GITEITKQIQMLSLNASIEAARAGEHGRGFAVVAGEVRKLSEQSKESNEQIREFLLSLQE 443 I I Q +L+LNA+IEAARAGEHGRGFA+VA EVRKL+EQS S+ +I + + +Q+ Sbjct: 482 VIQNIADQTNLLALNAAIEAARAGEHGRGFAIVADEVRKLAEQSSVSSSEISKLICEIQD 541 Query: 444 DMNRSVEEMNHVNAEVASGVGKVAEAGNAFSHLLILIQSINHSIQSVSAATQQISAGTEE 503 DM ++V+ MNHVN EV SG+ E F+ +L I + I+++ +S G E Sbjct: 542 DMGKTVKSMNHVNEEVQSGLVIANETKQNFAEILQSTNEIANQIKTMVETANGMSKGANE 601 Query: 504 VSASVEE---TAQITSKSRQNADTLAANSERQRQELE 537 VS SV + TAQ + S QN +AA++E Q +E Sbjct: 602 VSISVGQIAMTAQNNATSTQN---VAASAEEQLASME 635 >C2R739.1 C2R739_BACCE Methyl-accepting chemotaxis protein Length = 660 Score = 200 bits (508), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 147/457 (32%), Positives = 240/457 (52%), Gaps = 23/457 (5%) Query: 94 LETIFLIDL-KEGKATVLTADHGAGLKPDESIEVQPAMEQAAKGKAGLSEIYSDSHGIHK 152 L+T LI++ K+G A +L P E + E+AA A +IY D+HG Sbjct: 189 LKTSKLINIGKKGYAFILDGKQKIIAHPQE-----KSGEKAADSWA--KKIYEDNHGAFS 241 Query: 153 TAYVGVPG---------TTMVIGASSDVAFVKDKMSSILWTSAGITLAVLIVGVGSALLM 203 +Y G T IG + + V + + + + L L+VG + Sbjct: 242 YSYGGSEKNMVFATNVKTGWKIGGTMYSSEVIEAAQPVFYNMLIVMLISLVVGGALIYFV 301 Query: 204 TRRITHPITQLAAYSNKLAGGDFTQQLEIKGSDEVGQLAESFRTMSQQLKEMIGQVLDTS 263 T IT P+ +L S +++ GD TQ +EI +DE+GQLA+ F M+ L+ +IG++ D++ Sbjct: 302 TLSITKPLKRLVVTSKEISEGDLTQTIEIHSNDEIGQLAKGFNEMTNSLRTLIGRINDSA 361 Query: 264 SIVVADSNDLKGRTDILNGMAEQSSLSVXXXXXXXXXXXXXXQDNSRAMDEINTGIQHIA 323 V A S +L + EQ ++++ ++ + + ++ GIQH+A Sbjct: 362 GHVAAASEELTASVRQASEATEQITIAMDEISSGATTQTTSVENGAMLLFDVTEGIQHVA 421 Query: 324 SAAGEVTEQIIEASEEATGGNDIAQSAVEQMRQVAEASVKSLEQFRIMNERSLQIGEVVQ 383 +++ + E+A G + V QM+ +AE+ +S +++N +S QIG++++ Sbjct: 422 NSSSSINTASAHTREKAEDGGKLVGRTVNQMQSIAESVSQSDAVIQLLNNKSKQIGDILE 481 Query: 384 GITEITKQIQMLSLNASIEAARAGEHGRGFAVVAGEVRKLSEQSKESNEQIREFLLSLQE 443 I I Q +L+LNA+IEAARAGEHGRGFA+VA EVRKL+EQS S+ +I + + +Q+ Sbjct: 482 VIQNIADQTNLLALNAAIEAARAGEHGRGFAIVADEVRKLAEQSSVSSSEISKLICEIQD 541 Query: 444 DMNRSVEEMNHVNAEVASGVGKVAEAGNAFSHLLILIQSINHSIQSVSAATQQISAGTEE 503 DM ++V+ MNHVN EV SG+ E F+ +L I + I+++ +S G E Sbjct: 542 DMGKTVKSMNHVNEEVQSGLVIANETKQNFAEILQSTNEIANQIKTMVETANGMSKGANE 601 Query: 504 VSASVEE---TAQITSKSRQNADTLAANSERQRQELE 537 VS SV + TAQ + S QN +AA++E Q +E Sbjct: 602 VSISVGQIAMTAQNNATSTQN---VAASAEEQLASME 635 >C2Y9M3.1 C2Y9M3_BACCE Methyl-accepting chemotaxis protein Length = 660 Score = 200 bits (508), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 147/457 (32%), Positives = 240/457 (52%), Gaps = 23/457 (5%) Query: 94 LETIFLIDL-KEGKATVLTADHGAGLKPDESIEVQPAMEQAAKGKAGLSEIYSDSHGIHK 152 L+T LI++ K+G A +L P E + E+AA A +IY D+HG Sbjct: 189 LKTSKLINIGKKGYAFILDGKQKIIAHPQE-----KSGEKAADSWA--KKIYEDNHGAFS 241 Query: 153 TAYVGVPG---------TTMVIGASSDVAFVKDKMSSILWTSAGITLAVLIVGVGSALLM 203 +Y G T IG + + V + + + + L L+VG + Sbjct: 242 YSYGGSEKNMVFATNVKTGWKIGGTMYSSEVIEAAQPVFYNMLIVMLISLVVGGALIYFV 301 Query: 204 TRRITHPITQLAAYSNKLAGGDFTQQLEIKGSDEVGQLAESFRTMSQQLKEMIGQVLDTS 263 T IT P+ +L S +++ GD TQ +EI +DE+GQLA+ F M+ L+ +IG++ D++ Sbjct: 302 TLSITKPLKRLVVTSKEISEGDLTQTIEIHSNDEIGQLAKGFNEMTNSLRTLIGRINDSA 361 Query: 264 SIVVADSNDLKGRTDILNGMAEQSSLSVXXXXXXXXXXXXXXQDNSRAMDEINTGIQHIA 323 V A S +L + EQ ++++ ++ + + ++ GIQH+A Sbjct: 362 GHVAAASEELTASVRQASEATEQITIAMDEISSGAATQTTSVENGAMLLFDVTEGIQHVA 421 Query: 324 SAAGEVTEQIIEASEEATGGNDIAQSAVEQMRQVAEASVKSLEQFRIMNERSLQIGEVVQ 383 +++ + E+A G + V QM+ +AE+ +S +++N +S QIG++++ Sbjct: 422 NSSSSINTASAHTREKAEDGGKLVGRTVNQMQSIAESVSQSDAVIQLLNNKSKQIGDILE 481 Query: 384 GITEITKQIQMLSLNASIEAARAGEHGRGFAVVAGEVRKLSEQSKESNEQIREFLLSLQE 443 I I Q +L+LNA+IEAARAGEHGRGFA+VA EVRKL+EQS S+ +I + + +Q+ Sbjct: 482 VIQNIADQTNLLALNAAIEAARAGEHGRGFAIVADEVRKLAEQSSVSSSEISKLICEIQD 541 Query: 444 DMNRSVEEMNHVNAEVASGVGKVAEAGNAFSHLLILIQSINHSIQSVSAATQQISAGTEE 503 DM ++V+ MNHVN EV SG+ E F+ +L I + I+++ +S G E Sbjct: 542 DMGKTVKSMNHVNEEVQSGLVIANETKQNFAEILQSTNEIANQIKTMVETANGMSKGANE 601 Query: 504 VSASVEE---TAQITSKSRQNADTLAANSERQRQELE 537 VS SV + TAQ + S QN +AA++E Q +E Sbjct: 602 VSISVGQIAMTAQNNATSTQN---VAASAEEQLASME 635 >Q81EH1.1 Q81EH1_BACCR Methyl-accepting chemotaxis protein Length = 660 Score = 200 bits (508), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 146/457 (31%), Positives = 239/457 (52%), Gaps = 23/457 (5%) Query: 94 LETIFLIDL-KEGKATVLTADHGAGLKPDESIEVQPAMEQAAKGKAGLSEIYSDSHGIHK 152 L+T LI++ K+G A +L P E + ++AA A +IY D+HG Sbjct: 189 LKTTKLINIGKKGYAFILDGKQKIIAHPQE-----KSGDKAADSWA--KKIYEDNHGAFT 241 Query: 153 TAYVGVPG---------TTMVIGASSDVAFVKDKMSSILWTSAGITLAVLIVGVGSALLM 203 +Y G T IG + V + + + + L L+VG + Sbjct: 242 YSYGGSEKNMVFATNVKTGWKIGGTMYATEVIEAAQPVFYNMLIVMLISLVVGGALIYFV 301 Query: 204 TRRITHPITQLAAYSNKLAGGDFTQQLEIKGSDEVGQLAESFRTMSQQLKEMIGQVLDTS 263 T IT P+ +L S +++ GD TQ +EI +DE+GQLA+ F M+ L+ +IG++ D++ Sbjct: 302 TLSITKPLKRLVVTSKEISEGDLTQTIEIHSNDEIGQLAKGFNEMTNSLRTLIGRINDSA 361 Query: 264 SIVVADSNDLKGRTDILNGMAEQSSLSVXXXXXXXXXXXXXXQDNSRAMDEINTGIQHIA 323 V A S +L + EQ ++++ ++ + + ++ GIQH+A Sbjct: 362 GHVAAASEELTASVRQASEATEQITIAMDEISSGATTQTTSVENGAMLLFDVTEGIQHVA 421 Query: 324 SAAGEVTEQIIEASEEATGGNDIAQSAVEQMRQVAEASVKSLEQFRIMNERSLQIGEVVQ 383 +++ + E+A G + V QM+ +AE+ +S +++N +S QIG++++ Sbjct: 422 NSSSSINTASAHTREKAEDGGKLVGRTVNQMQSIAESVSQSDAVIQLLNNKSKQIGDILE 481 Query: 384 GITEITKQIQMLSLNASIEAARAGEHGRGFAVVAGEVRKLSEQSKESNEQIREFLLSLQE 443 I I Q +L+LNA+IEAARAGEHGRGFA+VA EVRKL+EQS S+ +I + + +Q+ Sbjct: 482 VIQNIADQTNLLALNAAIEAARAGEHGRGFAIVADEVRKLAEQSSVSSSEISKLICEIQD 541 Query: 444 DMNRSVEEMNHVNAEVASGVGKVAEAGNAFSHLLILIQSINHSIQSVSAATQQISAGTEE 503 DM ++V+ MNHVN EV SG+ E F+ +L I + I+++ +S G E Sbjct: 542 DMGKTVKSMNHVNEEVQSGLVIANETKQNFAEILQSTNEIANQIKTMVETANGMSKGANE 601 Query: 504 VSASVEE---TAQITSKSRQNADTLAANSERQRQELE 537 VS SV + TAQ + S QN +AA++E Q +E Sbjct: 602 VSISVGQIAMTAQNNATSTQN---VAASAEEQLASME 635 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.311 0.125 0.324 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,436,554,578 Number of extensions: 88185752 Number of successful extensions: 410377 Number of sequences better than 1.0e-05: 12767 Number of HSP's gapped: 372619 Number of HSP's successfully gapped: 12964 Length of query: 562 Length of database: 3,060,696,203 Length adjustment: 141 Effective length of query: 421 Effective length of database: 1,732,333,088 Effective search space: 729312230048 Effective search space used: 729312230048 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 134 (56.2 bits)