BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0231.0006.p
         (144 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1DCJ2.1 B1DCJ2_9BACL Transposase IS4 family protein                  164   3e-39
B1DBD0.1 B1DBD0_9BACL Transposase IS4 family protein                  160   4e-38
B1DGW0.1 B1DGW0_9BACL Transposase IS4 family protein                  158   1e-37
B2A1J7.1 B2A1J7_NATTJ Transposase IS4 family protein                  133   5e-30
Q93P75.1 Q93P75_9SPHI MS156, putative transposase                     117   3e-25

>B1DCJ2.1 B1DCJ2_9BACL Transposase IS4 family protein
          Length = 409

 Score =  164 bits (414), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 70/105 (66%), Positives = 90/105 (85%)

Query: 7   LQIGTENQFILAYSLHQRPTDTRCLEPHMEKVQQILGQLPKTVIADAGYGSEENYAYLEK 66
           +QIGTE+QFIL+YS+HQRPTDTRCL+PH++KV+  LGQLP T+IADAGYGSEENYAYLE 
Sbjct: 176 VQIGTEDQFILSYSIHQRPTDTRCLKPHLDKVKASLGQLPGTIIADAGYGSEENYAYLES 235

Query: 67  KEIQAVVKYGSYHKEKSKAWKANVGKIEYWTYNTAEDHWTCPAGK 111
           +E +A+VKY +YHKE ++AWK ++ K E W Y+ +ED WTC AG+
Sbjct: 236 EEQRALVKYNTYHKENTRAWKQDISKFENWLYDESEDIWTCAAGQ 280


>B1DBD0.1 B1DBD0_9BACL Transposase IS4 family protein
          Length = 460

 Score =  160 bits (404), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 68/105 (64%), Positives = 88/105 (83%)

Query: 7   LQIGTENQFILAYSLHQRPTDTRCLEPHMEKVQQILGQLPKTVIADAGYGSEENYAYLEK 66
           +QIGTE+QFI++YSLHQRPTDTRCL+PH++KV+ +LGQLP T+ ADAGYGSEENYAYLE 
Sbjct: 227 VQIGTEDQFIISYSLHQRPTDTRCLKPHLDKVKALLGQLPGTIFADAGYGSEENYAYLES 286

Query: 67  KEIQAVVKYGSYHKEKSKAWKANVGKIEYWTYNTAEDHWTCPAGK 111
           +E + +VKY +YHKE +KAWK ++ K E+  Y+  ED WTC AG+
Sbjct: 287 EEQRVLVKYNTYHKENTKAWKQDISKFEHGLYDETEDTWTCSAGQ 331


>B1DGW0.1 B1DGW0_9BACL Transposase IS4 family protein
          Length = 516

 Score =  158 bits (400), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 69/105 (65%), Positives = 88/105 (83%)

Query: 7   LQIGTENQFILAYSLHQRPTDTRCLEPHMEKVQQILGQLPKTVIADAGYGSEENYAYLEK 66
           +QIGTE+QFIL+YS++QRPTDTRCL+PH++KV+  LGQLP T+I DAGYGSEENYAYLE 
Sbjct: 283 VQIGTEDQFILSYSIYQRPTDTRCLKPHLDKVKASLGQLPGTIITDAGYGSEENYAYLES 342

Query: 67  KEIQAVVKYGSYHKEKSKAWKANVGKIEYWTYNTAEDHWTCPAGK 111
           +E +A+VKY +Y KEK+KAWK ++ K E W Y+  ED WTC AG+
Sbjct: 343 EEQRALVKYNTYPKEKTKAWKQDISKFENWLYDENEDSWTCAAGQ 387


>B2A1J7.1 B2A1J7_NATTJ Transposase IS4 family protein
          Length = 486

 Score =  133 bits (335), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 56/105 (53%), Positives = 79/105 (75%)

Query: 7   LQIGTENQFILAYSLHQRPTDTRCLEPHMEKVQQILGQLPKTVIADAGYGSEENYAYLEK 66
           +Q+GTENQFIL YS+HQ+PTDT CL PH+EK+++ LG +P+ +IADAGYGSEENY YLE+
Sbjct: 258 IQLGTENQFILGYSIHQKPTDTTCLIPHLEKLEEQLGNVPQNIIADAGYGSEENYRYLEE 317

Query: 67  KEIQAVVKYGSYHKEKSKAWKANVGKIEYWTYNTAEDHWTCPAGK 111
           K+  A VKY +Y +E+ ++W+  + + E   Y+   D + CP GK
Sbjct: 318 KDRNAYVKYNTYFQEQKRSWRKKIFRRENMHYDAKNDKFICPNGK 362


>Q93P75.1 Q93P75_9SPHI MS156, putative transposase
          Length = 510

 Score =  117 bits (293), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 59/137 (43%), Positives = 83/137 (60%), Gaps = 10/137 (7%)

Query: 7   LQIGTENQFILAYSLHQRPTDTRCLEPHMEKVQQILGQLPKTVIADAGYGSEENYAYLEK 66
           LQI T +QFI+ YS+HQ PTDT  L+PH+++ Q +    P+++ ADAGYGSEENY YLE+
Sbjct: 285 LQISTSDQFIVNYSIHQNPTDTLTLKPHLQQYQNLYKTNPESICADAGYGSEENYDYLEE 344

Query: 67  KEIQAVVKYGSYHKEKSKAWKANVGKIEYWTYNTAEDHWTCPAGKCIWTTEEQPGVPAIS 126
           + I++ VKY  +HKE+SK WK N  + +   YN  +D   CP G+ +             
Sbjct: 345 QTIESYVKYNYFHKEQSKKWKENPFRTDNLHYNEEQDKLYCPMGQPMDRI---------- 394

Query: 127 ASRHGESDARSRLAFAR 143
           A R  ES A  +  +AR
Sbjct: 395 ADRKSESSAGYKQTYAR 411


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.315    0.130    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 891,953,813
Number of extensions: 34855749
Number of successful extensions: 88658
Number of sequences better than 1.0e-05: 220
Number of HSP's gapped: 88537
Number of HSP's successfully gapped: 220
Length of query: 144
Length of database: 3,060,696,203
Length adjustment: 107
Effective length of query: 37
Effective length of database: 2,052,647,598
Effective search space: 75947961126
Effective search space used: 75947961126
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 125 (52.8 bits)