BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0231.0005.p
         (50 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1DBD0.1 B1DBD0_9BACL Transposase IS4 family protein                   72   2e-11
B1DGW0.1 B1DGW0_9BACL Transposase IS4 family protein                   65   2e-09
B2A1J7.1 B2A1J7_NATTJ Transposase IS4 family protein                   54   6e-06

>B1DBD0.1 B1DBD0_9BACL Transposase IS4 family protein
          Length = 460

 Score = 71.6 bits (174), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 30/40 (75%), Positives = 38/40 (95%)

Query: 1  MWLAGRQRPNFRTLNRFRSQRMRNVLETVFTAVLQFAQEQ 40
          MWL+ RQRP+FRT+NRFRS+RM++VLETVFTAVLQF +E+
Sbjct: 31 MWLSARQRPDFRTINRFRSERMKDVLETVFTAVLQFLKEE 70


>B1DGW0.1 B1DGW0_9BACL Transposase IS4 family protein
          Length = 516

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/40 (75%), Positives = 37/40 (92%)

Query: 1   MWLAGRQRPNFRTLNRFRSQRMRNVLETVFTAVLQFAQEQ 40
           MWLA RQ P+FRT+NRFRS+RM++VLETVFTAVLQF +E+
Sbjct: 87  MWLAARQCPDFRTINRFRSERMKDVLETVFTAVLQFLKEE 126


>B2A1J7.1 B2A1J7_NATTJ Transposase IS4 family protein
          Length = 486

 Score = 53.5 bits (127), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/36 (58%), Positives = 31/36 (86%)

Query: 1  MWLAGRQRPNFRTLNRFRSQRMRNVLETVFTAVLQF 36
          MW+A RQ+P+FRT+NRFRS+RM+ V++ VF +VL+ 
Sbjct: 62 MWIAARQKPDFRTINRFRSERMKYVIDEVFASVLEL 97


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.323    0.129    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 233,959,389
Number of extensions: 4887840
Number of successful extensions: 12030
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 12030
Number of HSP's successfully gapped: 3
Length of query: 50
Length of database: 3,060,696,203
Length adjustment: 23
Effective length of query: 27
Effective length of database: 2,844,012,858
Effective search space: 76788347166
Effective search space used: 76788347166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 126 (53.1 bits)