BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0231.0004.p (255 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q97TH2.1 Q97TH2_CLOAB Glycogen-binding regulatory subunit of S/T... 117 1e-24 Q4SIL3.1 Q4SIL3_TETNG Chromosome 5 SCAF14581, whole genome shotg... 69 3e-10 Q7PXQ2.4 Q7PXQ2_ANOGA AGAP001520-PA 65 4e-09 Q0VCR4.1 PPR3C_BOVIN Protein phosphatase 1 regulatory subunit 3C 64 2e-08 Q7Z7X9.1 Q7Z7X9_RHIOR Glucoamylase (Fragment) 58 7e-07 >Q97TH2.1 Q97TH2_CLOAB Glycogen-binding regulatory subunit of S/T protein phosphatase I Length = 247 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 91/263 (34%), Positives = 131/263 (49%), Gaps = 31/263 (11%) Query: 4 KMNKSLSILVLAAVFVLTF-------AQSVFASDQPVQLTSANLYL---YKFGYVGFSGN 53 K+NKS ++ FV F + A P+QL + Y G+V G Sbjct: 2 KLNKSAGKIITLIAFVAAFFIINIGVVPNAKADTNPIQLYYSQRITDDEYSIGHV--EGY 59 Query: 54 IEVSNLGNPKTVTIHYTPGDGQ-WYDTNASY--QGPTDSTHEKWSFIVSTDNISNNNPQL 110 + V NL K V +HY+ G+ W D+ A+Y P+D+ +E W F + + S P Sbjct: 60 LAVRNLAFEKNVYVHYSLDGGKNWSDSPAAYVKTNPSDN-YEVWKFKTPSSSESFGPP-- 116 Query: 111 TNAQTIQFAIKYEVNGQTYWDNNNGQNYSVSRFNESSTILGKPNVFRAYDDLYENTFSGS 170 I + KYEVNGQTYWDNNNG+NY + SS + +R + N F+ + Sbjct: 117 -----ITYCFKYEVNGQTYWDNNNGKNYVDGAYGLSSVYVHDVKTYRNINSS-NNYFATN 170 Query: 171 VYVKNLVSSKEVKIKYTTDNWNTTREGFASYSIPANSDGSVEIWGFSFNNIDPSVTQIQY 230 V VKN+ + VK++YTTDNW T + + AN + +G S + Q+Q+ Sbjct: 171 VDVKNIDGDRVVKVRYTTDNWKTYTD------VVANHNNEKTEFGIS-QPVPQGTKQVQF 223 Query: 231 AISYTANGQTYWDNNYGNNYTVN 253 A+ Y NG YWDNN+G+NYTVN Sbjct: 224 AVVYEVNGVQYWDNNFGSNYTVN 246 >Q4SIL3.1 Q4SIL3_TETNG Chromosome 5 SCAF14581, whole genome shotgun sequence Length = 296 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 38/95 (40%), Positives = 53/95 (55%), Gaps = 7/95 (7%) Query: 164 ENTFSGSVYVKNLVSSKEVKIKYTTDNWNTTREGFASYSIPANSDGSVEIWGFSFNNIDP 223 E + SG V V NL K V ++Y+ +NW T + ASY +P +SDG + F F + P Sbjct: 186 EFSLSGIVRVLNLAFEKSVFLRYSLNNWITFMDSLASY-VPCSSDGVTD--KFRFKIVTP 242 Query: 224 SVTQ----IQYAISYTANGQTYWDNNYGNNYTVNR 254 + +Q+AI Y G+ YWDNN GNNY + R Sbjct: 243 TYLDSGGTLQFAIKYCVGGEEYWDNNDGNNYKIRR 277 >Q7PXQ2.4 Q7PXQ2_ANOGA AGAP001520-PA Length = 380 Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 3/95 (3%) Query: 164 ENTFSGSVYVKNLVSSKEVKIKYTTDNWNTTREGFASYSIPANSDGSVEIW--GFSFN-N 220 E G+V VKNL KEV I+ + D+W T + F +YS+ N S + FSF Sbjct: 219 EQLIVGTVKVKNLSYHKEVIIRSSCDSWKTHEDTFCTYSVVGNGAASAYLIFDTFSFKLT 278 Query: 221 IDPSVTQIQYAISYTANGQTYWDNNYGNNYTVNRR 255 + P +I++ +Y +G YWDNN G NY++ R Sbjct: 279 LPPKSRRIEFCAAYKCDGVEYWDNNDGRNYSLTNR 313 >Q0VCR4.1 PPR3C_BOVIN Protein phosphatase 1 regulatory subunit 3C Length = 318 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 35/95 (36%), Positives = 55/95 (57%), Gaps = 6/95 (6%) Query: 162 LYENTFSGSVYVKNLVSSKEVKIKYTTDNWNTTREGFASYSIPANSDGSVEIWGFSF--- 218 L E T +G+V VKN+ K+V+I+ T D+W + + +Y N G E FSF Sbjct: 164 LQERTVTGTVKVKNMSFEKKVQIRITFDSWQSYNDVDCAYM--KNVYGGSESDTFSFAID 221 Query: 219 -NNIDPSVTQIQYAISYTANGQTYWDNNYGNNYTV 252 ++ P+ +I++ ++Y ANGQ +WDNN G NY + Sbjct: 222 LPSVIPTKEKIEFCVAYHANGQVFWDNNEGQNYRI 256 >Q7Z7X9.1 Q7Z7X9_RHIOR Glucoamylase (Fragment) Length = 579 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 43/112 (38%), Positives = 58/112 (51%), Gaps = 19/112 (16%) Query: 36 TSANLYLYKFGYVG--FSGNIEVSNLGNPKTVTIHYTPGDGQWYDTN----ASYQGP-TD 88 +SA++ L + Y G FSG I V N+ K VT+ Y G W + ASY P + Sbjct: 5 SSASVQLDSYNYDGSTFSGKIYVKNIAYSKKVTVIYADGSDNWNNNGNTVAASYSAPISG 64 Query: 89 STHEKWSFIVSTDNISNNNPQLTNAQTIQFAIKYEVNGQTYWDNNNGQNYSV 140 S +E W+F S + I +F IKYEV+G+TY+DNNN NY V Sbjct: 65 SNYEYWTFSASINGIK------------EFYIKYEVSGKTYYDNNNSANYQV 104 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.313 0.129 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,590,442,387 Number of extensions: 69735163 Number of successful extensions: 149369 Number of sequences better than 1.0e-05: 89 Number of HSP's gapped: 149425 Number of HSP's successfully gapped: 104 Length of query: 255 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 122 Effective length of database: 1,807,701,208 Effective search space: 220539547376 Effective search space used: 220539547376 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 129 (54.3 bits)