BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0229.0014.p (236 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A9MLK8.1 A9MLK8_SALAR Putative uncharacterized protein 228 4e-58 B5PRV9.1 B5PRV9_SALHA GntR family regulatory protein 227 6e-58 Q8Z276.1 Q8Z276_SALTI GntR family regulatory protein 226 1e-57 Q5PJQ2.1 Q5PJQ2_SALPA GntR family regulatory protein 226 1e-57 C0Q161.1 C0Q161_SALPC GntR family regulatory protein 226 1e-57 >A9MLK8.1 A9MLK8_SALAR Putative uncharacterized protein Length = 239 Score = 228 bits (580), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 113/234 (48%), Positives = 155/234 (66%) Query: 3 DHSESSPLYKQLQEKILDSIHDGTLKPGDKLPTELELSETNQVSRVTVRAALDALTSEGY 62 D + + PLYKQL+ + ++I G KPG ++PTE ELS QVSRVTVR ALDALT E Sbjct: 6 DSNSAKPLYKQLEAALKEAIARGEYKPGQQIPTENELSARWQVSRVTVRKALDALTRENL 65 Query: 63 LVRIPGKGTFITKDKIQKNVAETIGFSDTCRLQNKTPGAKVIKCVIEEATAADQEHLGLN 122 L R+ GKGTF++ +K Q+++ + FS+ C+ Q + PG++ IK V E + L +N Sbjct: 66 LTRVSGKGTFVSSEKFQRSMTGIMSFSELCQSQGRRPGSRTIKSVFESVDDETKALLNMN 125 Query: 123 PGDKVINIERIRYADNVPISVEYSRFPSSYSFLLQEDLNDKSLYEILRSKYKVTFGHSRK 182 G+K + IERIRYAD+V +S+E P ++FLL+EDLN+ SLYE LR KY + F HSRK Sbjct: 126 NGEKAVVIERIRYADDVAVSLETVHLPPRFAFLLEEDLNNHSLYECLREKYHLWFIHSRK 185 Query: 183 YIVMEYASFDVAAYLNIEEGYPLLSIRSTVSSPDGQKIHRSKQLILGDKFELIV 236 I + YASF+VA YL + EGYPL+ I+S + G+ S+QLI+GDK V Sbjct: 186 MIELVYASFEVAHYLGVNEGYPLILIKSEMIDNKGELSCVSQQLIVGDKIRFTV 239 >B5PRV9.1 B5PRV9_SALHA GntR family regulatory protein Length = 239 Score = 227 bits (579), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 113/234 (48%), Positives = 154/234 (65%) Query: 3 DHSESSPLYKQLQEKILDSIHDGTLKPGDKLPTELELSETNQVSRVTVRAALDALTSEGY 62 D + PLYKQL++ + ++I G KPG ++PTE ELS QVSRVTVR ALDALT E Sbjct: 6 DSKSAKPLYKQLEDALKEAIARGEYKPGQQIPTENELSARWQVSRVTVRKALDALTRENL 65 Query: 63 LVRIPGKGTFITKDKIQKNVAETIGFSDTCRLQNKTPGAKVIKCVIEEATAADQEHLGLN 122 L R+ GKGTF++ +K Q+++ + FS+ C+ Q + PG++ IK V E + L +N Sbjct: 66 LTRVSGKGTFVSGEKFQRSMTGIMSFSELCQSQGRRPGSRTIKSVFESVDDETKALLNMN 125 Query: 123 PGDKVINIERIRYADNVPISVEYSRFPSSYSFLLQEDLNDKSLYEILRSKYKVTFGHSRK 182 G+K + IERIRYAD+V +S+E P ++FLL EDLN+ SLYE LR KY + F HSRK Sbjct: 126 DGEKAVVIERIRYADDVAVSLETVHLPPRFAFLLDEDLNNHSLYECLREKYHLWFTHSRK 185 Query: 183 YIVMEYASFDVAAYLNIEEGYPLLSIRSTVSSPDGQKIHRSKQLILGDKFELIV 236 I + YASF+VA YL + EGYPL+ I+S + G+ S+QLI+GDK V Sbjct: 186 MIELVYASFEVAHYLGVNEGYPLILIKSEMIDNKGELSCVSQQLIVGDKIRFTV 239 >Q8Z276.1 Q8Z276_SALTI GntR family regulatory protein Length = 239 Score = 226 bits (577), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 113/234 (48%), Positives = 154/234 (65%) Query: 3 DHSESSPLYKQLQEKILDSIHDGTLKPGDKLPTELELSETNQVSRVTVRAALDALTSEGY 62 D + PLYKQL++ + ++I G KPG ++PTE ELS QVSRVTVR ALDALT E Sbjct: 6 DSKSAKPLYKQLEDALKEAIARGEYKPGQQIPTENELSVRWQVSRVTVRKALDALTRENL 65 Query: 63 LVRIPGKGTFITKDKIQKNVAETIGFSDTCRLQNKTPGAKVIKCVIEEATAADQEHLGLN 122 L R+ GKGTF++ +K Q+++ + FS+ C+ Q + PG++ IK V E + L +N Sbjct: 66 LTRVSGKGTFVSGEKFQRSMTGIMSFSELCQSQGRRPGSRTIKSVFESVDDETKALLNMN 125 Query: 123 PGDKVINIERIRYADNVPISVEYSRFPSSYSFLLQEDLNDKSLYEILRSKYKVTFGHSRK 182 G+K + IERIRYAD+V +S+E P ++FLL EDLN+ SLYE LR KY + F HSRK Sbjct: 126 DGEKAVVIERIRYADDVAVSLETVHLPPRFAFLLDEDLNNHSLYECLREKYHLWFTHSRK 185 Query: 183 YIVMEYASFDVAAYLNIEEGYPLLSIRSTVSSPDGQKIHRSKQLILGDKFELIV 236 I + YASF+VA YL + EGYPL+ I+S + G+ S+QLI+GDK V Sbjct: 186 MIELVYASFEVAHYLGVNEGYPLILIKSEMIDNKGELSCVSQQLIVGDKIRFTV 239 >Q5PJQ2.1 Q5PJQ2_SALPA GntR family regulatory protein Length = 239 Score = 226 bits (577), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 113/234 (48%), Positives = 154/234 (65%) Query: 3 DHSESSPLYKQLQEKILDSIHDGTLKPGDKLPTELELSETNQVSRVTVRAALDALTSEGY 62 D + PLYKQL++ + ++I G KPG ++PTE ELS QVSRVTVR ALDALT E Sbjct: 6 DSKSAKPLYKQLEDALKEAIARGEYKPGQQIPTENELSVRWQVSRVTVRKALDALTRENL 65 Query: 63 LVRIPGKGTFITKDKIQKNVAETIGFSDTCRLQNKTPGAKVIKCVIEEATAADQEHLGLN 122 L R+ GKGTF++ +K Q+++ + FS+ C+ Q + PG++ IK V E + L +N Sbjct: 66 LTRVSGKGTFVSGEKFQRSMTGIMSFSELCQSQGRRPGSRTIKSVFESVDDETKALLNMN 125 Query: 123 PGDKVINIERIRYADNVPISVEYSRFPSSYSFLLQEDLNDKSLYEILRSKYKVTFGHSRK 182 G+K + IERIRYAD+V +S+E P ++FLL EDLN+ SLYE LR KY + F HSRK Sbjct: 126 DGEKAVVIERIRYADDVAVSLETVHLPPRFAFLLDEDLNNHSLYECLREKYHLWFTHSRK 185 Query: 183 YIVMEYASFDVAAYLNIEEGYPLLSIRSTVSSPDGQKIHRSKQLILGDKFELIV 236 I + YASF+VA YL + EGYPL+ I+S + G+ S+QLI+GDK V Sbjct: 186 MIELVYASFEVAHYLGVNEGYPLILIKSEMIDNKGELSCVSQQLIVGDKIRFTV 239 >C0Q161.1 C0Q161_SALPC GntR family regulatory protein Length = 239 Score = 226 bits (577), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 113/234 (48%), Positives = 154/234 (65%) Query: 3 DHSESSPLYKQLQEKILDSIHDGTLKPGDKLPTELELSETNQVSRVTVRAALDALTSEGY 62 D + PLYKQL++ + ++I G KPG ++PTE ELS QVSRVTVR ALDALT E Sbjct: 6 DSKSAKPLYKQLEDALKEAIARGEYKPGQQIPTENELSVRWQVSRVTVRKALDALTRENL 65 Query: 63 LVRIPGKGTFITKDKIQKNVAETIGFSDTCRLQNKTPGAKVIKCVIEEATAADQEHLGLN 122 L R+ GKGTF++ +K Q+++ + FS+ C+ Q + PG++ IK V E + L +N Sbjct: 66 LTRVSGKGTFVSGEKFQRSMTGIMSFSELCQSQGRRPGSRTIKSVFESVDDETKALLNMN 125 Query: 123 PGDKVINIERIRYADNVPISVEYSRFPSSYSFLLQEDLNDKSLYEILRSKYKVTFGHSRK 182 G+K + IERIRYAD+V +S+E P ++FLL EDLN+ SLYE LR KY + F HSRK Sbjct: 126 DGEKAVVIERIRYADDVAVSLETVHLPPRFAFLLDEDLNNHSLYECLREKYHLWFTHSRK 185 Query: 183 YIVMEYASFDVAAYLNIEEGYPLLSIRSTVSSPDGQKIHRSKQLILGDKFELIV 236 I + YASF+VA YL + EGYPL+ I+S + G+ S+QLI+GDK V Sbjct: 186 MIELVYASFEVAHYLGVNEGYPLILIKSEMIDNKGELSCVSQQLIVGDKIRFTV 239 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.134 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,364,875,216 Number of extensions: 54029506 Number of successful extensions: 119259 Number of sequences better than 1.0e-05: 3901 Number of HSP's gapped: 117114 Number of HSP's successfully gapped: 3901 Length of query: 236 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 104 Effective length of database: 1,817,122,223 Effective search space: 188980711192 Effective search space used: 188980711192 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 129 (54.3 bits)