BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0229.0010.p (276 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A8RGW7.1 A8RGW7_9CLOT Putative uncharacterized protein 343 1e-92 C0D4C4.1 C0D4C4_9CLOT Putative uncharacterized protein 223 1e-56 A8RGW2.1 A8RGW2_9CLOT Putative uncharacterized protein 204 9e-51 Q97DH8.1 Q97DH8_CLOAB Predicted endonuclease 202 4e-50 Q0FNT8.1 Q0FNT8_9RHOB AP endonuclease, family 2 201 4e-50 >A8RGW7.1 A8RGW7_9CLOT Putative uncharacterized protein Length = 276 Score = 343 bits (880), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 159/276 (57%), Positives = 206/276 (74%), Gaps = 1/276 (0%) Query: 2 IQLNQVSAANFHYKRYSLDYFLDSAARLGFENIELWASGPHFHLDYYTPQDVQHLKRKIK 61 ++++Q+ AAN+HYKRY+LDYFLDSA RLGF+++ELWASGPH HL+ + ++ L R IK Sbjct: 1 MKISQLCAANYHYKRYTLDYFLDSANRLGFQSVELWASGPHLHLEDFDGGRLRELNRTIK 60 Query: 62 DRGLKVICLTPEQSVYPISISHPDPVYRKKSVEFFCRHIEVAALMECDQMLVTTGLAYLD 121 D LK+ C TPEQ VYPIS+SHPD YR ++V+FF RHIE A ++C M+V+TG AYLD Sbjct: 61 DHHLKIACFTPEQCVYPISVSHPDKRYRDRTVDFFQRHIEAAVCLDCSCMVVSTGFAYLD 120 Query: 122 EDESEMWKWCRESLGEICKTAEKEGVILPVEAFTSYSTHVFNSAEHISRMIKEVGSPNLK 181 D + +KW +S +IC+ AE EGV L +E FT Y+TH+ N A + R+++ VGSP LK Sbjct: 121 VDGEDAFKWTADSFFQICRKAESEGVTLALEPFTKYTTHICNEASQLLRLLRTVGSPALK 180 Query: 182 GLADTDVMAVTGKDTIHDFIRELGG-NLGYVHFVDGNPGGHLVPGEGGLPLEEALQALND 240 GL DTDV+A TG DT FI LG NL +VHFVDGNPGGHLVPG+G L L++AL L Sbjct: 181 GLGDTDVIATTGVDTFETFIGILGRENLAHVHFVDGNPGGHLVPGDGNLNLDQALHTLEA 240 Query: 241 SGYKGYLGLELLDRRYVLDPEKAMRDSLAWFEKHLG 276 YKGYLGLE+LDRRYV++PE AMR +LAW+ + +G Sbjct: 241 FDYKGYLGLEILDRRYVMNPEDAMRRALAWYSERIG 276 >C0D4C4.1 C0D4C4_9CLOT Putative uncharacterized protein Length = 289 Score = 223 bits (568), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 109/274 (39%), Positives = 171/274 (62%), Gaps = 2/274 (0%) Query: 2 IQLNQVSAANFHYKRYSLDYFLDSAARLGFENIELWASGPHFHLDYYTPQDVQHLKRKIK 61 ++ +Q++ N+ Y YS DYFL+S RLG + IE+WA+GPHF+LD + ++ K++ Sbjct: 1 MRWSQIAVGNYPYAMYSFDYFLESMKRLGVDQIEVWAAGPHFYLDDFDYFRMKEFAGKVQ 60 Query: 62 DRGLKVICLTPEQSVYPISISHPDPVYRKKSVEFFCRHIEVAALMECDQMLVTTGLAYLD 121 G+K +CLTPEQ YP+SIS DPV R++S+ +F + I+ A L+EC ++LVT G + LD Sbjct: 61 RAGMKAVCLTPEQCQYPVSISVEDPVMRRRSLNYFKKAIDAAELLECPKVLVTPGRSMLD 120 Query: 122 EDESEMWKWCRESLGEICKTAEKEGVILPVEAFTSYSTHVFNSAEHISRMIKEVGS-PNL 180 C +SL + + A + V L +EA +T + + E + ++ G+ PNL Sbjct: 121 YSRETGVALCIDSLNRLAEYAIRRNVTLVLEALARTTTFIAHRPEELKVLLDGAGNPPNL 180 Query: 181 KGLADTDVMAVTGKDTIHDFIRELGGNLGYVHFVDGNPGGHLVPGEGGLPLEEALQALND 240 + DTD A G DF R G L ++HF DG PGGH+VPG+G L + L+ ++ Sbjct: 181 VPMLDTDGAAREGLRP-RDFFRLFGKTLAHIHFTDGYPGGHVVPGQGRLDMNGYLEEIDS 239 Query: 241 SGYKGYLGLELLDRRYVLDPEKAMRDSLAWFEKH 274 +G++GY+ LELLDR+Y L+PE+A++ SL +F ++ Sbjct: 240 AGFQGYIALELLDRQYYLEPEQAVKASLEFFRRY 273 >A8RGW2.1 A8RGW2_9CLOT Putative uncharacterized protein Length = 277 Score = 204 bits (518), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 96/269 (35%), Positives = 156/269 (57%), Gaps = 4/269 (1%) Query: 6 QVSAANFHYKRYSLDYFLDSAARLGFENIELWASGPHFHLDYYTPQDVQHLKRKIKDRGL 65 + + N+HY RY + FLD F++I+L+ S P ++ Y+ + L R I+ R L Sbjct: 2 KFAPMNYHYLRYPIKKFLDKVESSPFDSIDLYCSAPQLNIFDYSLSRLIELDRDIRQRNL 61 Query: 66 KVICLTPEQSVYPISISHPDPVYRKKSVEFFCRHIEVAALMECDQMLVTTGLAYLDEDES 125 KV+ +TPE VYP++ DPV R+ S+ ++ R I+ A + C + ++TG Y D+ Sbjct: 62 KVMAMTPENCVYPVNFCTQDPVTRQSSIRYYQRAIDTAEFLGCPNIQISTGFGYFDQPRE 121 Query: 126 EMWKWCRESLGEICKTAEKEGVILPVEAFTSYSTHVFNSAEHISRMIKEVGSPNLKGLAD 185 E WK+CRESL ++ +++ V L +E +T+V +++ I+ M+ E+GSP + G+ D Sbjct: 122 EAWKYCRESLAQLAVYCQRKQVRLFLEELKVTTTNVLITSKDIAGMLDEIGSPCIVGMVD 181 Query: 186 TDVMAVTGKDTIHDFIRELGGNLGYVHFVDGNPGGHLVPGEGGLPLEEALQALNDSGYKG 245 D M G +T+ D+ LG L ++HF N GH VPG G P++E A+ GY G Sbjct: 182 MDQMTYAG-ETVDDYFDHLGERLMHIHF---NDRGHTVPGHGDFPMKEYYDAIKRRGYDG 237 Query: 246 YLGLELLDRRYVLDPEKAMRDSLAWFEKH 274 + E+ DRRY DP+KA+ D ++W +K+ Sbjct: 238 TVSFEICDRRYYCDPDKAIDDIVSWMKKN 266 >Q97DH8.1 Q97DH8_CLOAB Predicted endonuclease Length = 271 Score = 202 bits (513), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 93/269 (34%), Positives = 157/269 (58%), Gaps = 4/269 (1%) Query: 6 QVSAANFHYKRYSLDYFLDSAARLGFENIELWASGPHFHLDYYTPQDVQHLKRKIKDRGL 65 + + N+HY RY ++ FLD F++I+L+ S P ++ Y+ + L R I+ R L Sbjct: 2 KFAPMNYHYLRYPIEKFLDKVEESPFDSIDLYCSAPQLNIFDYSLGKLIELDRNIRRRKL 61 Query: 66 KVICLTPEQSVYPISISHPDPVYRKKSVEFFCRHIEVAALMECDQMLVTTGLAYLDEDES 125 V+ +TPE YP++ PD + R+ S+ ++ R I+ A + C + ++TG Y ++ Sbjct: 62 NVMAITPENCTYPVNFCTPDIITRESSIRYYQRAIDTAEFLGCSNVQISTGFGYFNQPRD 121 Query: 126 EMWKWCRESLGEICKTAEKEGVILPVEAFTSYSTHVFNSAEHISRMIKEVGSPNLKGLAD 185 E WK+C+ESL ++ E++ V L +E + +T+V S++ IS MI+E+ S N+ G+ D Sbjct: 122 EAWKYCQESLAQVIAYCERKNVRLMLEELKATTTNVLISSKDISNMIREIDSANIVGMID 181 Query: 186 TDVMAVTGKDTIHDFIRELGGNLGYVHFVDGNPGGHLVPGEGGLPLEEALQALNDSGYKG 245 D M G +TI D+ LG + ++HF N GH VPG+G P++E AL GY G Sbjct: 182 LDQMTYAG-ETIDDYFDNLGEKIQHIHF---NDRGHTVPGDGDFPMKEYYSALKKRGYTG 237 Query: 246 YLGLELLDRRYVLDPEKAMRDSLAWFEKH 274 + E+ DRRY +P+KA+ D ++W +++ Sbjct: 238 NVSFEICDRRYYCNPDKAIDDIVSWMKEN 266 >Q0FNT8.1 Q0FNT8_9RHOB AP endonuclease, family 2 Length = 276 Score = 201 bits (512), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 98/265 (36%), Positives = 153/265 (57%), Gaps = 1/265 (0%) Query: 5 NQVSAANFHYKRYSLDYFLDSAARLGFENIELWASGPHFHLDYYTPQDVQHLKRKIKDRG 64 ++++A N HY R+SL FLD AA LGF IELWA PH LD + +++ ++R I R Sbjct: 7 SRLAAMNIHYFRHSLTRFLDDAAALGFARIELWAGMPHLSLDDASATELRDVRRMIAARD 66 Query: 65 LKVICLTPEQSVYPISISHPDPVYRKKSVEFFCRHIEVAALMECDQMLVTTGLAYLDEDE 124 L + C TPEQ VYPI+++ P ++S ++F R + AA ++C Q+LVT G Y D Sbjct: 67 LSLSCFTPEQCVYPINLASEHPGTARRSFDYFRRALHGAASLDCRQLLVTAGWGYADAPA 126 Query: 125 SEMWKWCRESLGEICKTAEKEGVILPVEAFTSYSTHVFNSAEHISRMIKEVGSPNLKGLA 184 S+ W+ R+ LG + A +EGV L +E + +++ ++ ++RM+ E+ SP + + Sbjct: 127 SDAWERARDQLGALADEAAREGVTLLLEPLSRTESNLITTSAELARMMAELASPQVAAIL 186 Query: 185 DTDVMAVTGKDTIHDFIRELGGNLGYVHFVDGNPGGHLVPGEGGLPLEEALQALNDSGYK 244 D + MA G +T D++ G L +VH DG P GHL G+G LPL + + L +GY+ Sbjct: 187 DLNAMAAAG-ETPADYLARFGDALRHVHVCDGTPEGHLAWGDGSLPLAQYVAELEAAGYQ 245 Query: 245 GYLGLELLDRRYVLDPEKAMRDSLA 269 G E + + Y LDP + + A Sbjct: 246 GDYSFEFVSQAYWLDPRTPLESARA 270 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.138 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,796,444,413 Number of extensions: 79000918 Number of successful extensions: 271244 Number of sequences better than 1.0e-05: 201 Number of HSP's gapped: 271362 Number of HSP's successfully gapped: 201 Length of query: 276 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 142 Effective length of database: 1,798,280,193 Effective search space: 255355787406 Effective search space used: 255355787406 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)