BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0229.0005.p (223 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B8I0F7.1 B8I0F7_CLOCE Transcriptional regulator, GntR family 122 3e-26 A9IUN0.1 A9IUN0_BORPD Transcriptional regulator, GntR family 121 4e-26 Q65L06.1 Q65L06_BACLD Putative uncharacterized protein 120 7e-26 B9YDE6.1 B9YDE6_9FIRM Putative uncharacterized protein 120 8e-26 B0A7B2.1 B0A7B2_9CLOT Putative uncharacterized protein 119 2e-25 >B8I0F7.1 B8I0F7_CLOCE Transcriptional regulator, GntR family Length = 225 Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 64/197 (32%), Positives = 113/197 (57%), Gaps = 1/197 (0%) Query: 1 MSIKAEIMNTLKHEILTLALKPGTILSETALSERFQISRTPLRDVLKQLALESYTDIYPK 60 + +K I +K+ IL L KPG ++SET +SE +SRTP+R+V +L+LE DIYP+ Sbjct: 9 LPLKEVIYIEVKNRILNLEYKPGQMISETEISELLNVSRTPVREVFIRLSLEKLIDIYPQ 68 Query: 61 KGNIVSYIDLESVEQITYLRSTLEKEILKDLSSQLLLTGVHELKDILERQKEAI-GHNDI 119 KG VS +DL V++ Y+R+ LE +I ++ + L T E+K + QK + +I Sbjct: 69 KGTFVSLVDLSYVKESVYMRNILECQIAGEIINSGLKTLPAEIKKNIGLQKYLVENEGNI 128 Query: 120 DSFLNQDDAFHRALYRLAGREFLWNLIQQSNVHYLRYRRLHMLKTEKLAGIWKEHQSLLE 179 + FL D+ FH+ +++ + +W++I + +HY R+R L M + E + +++EH ++ Sbjct: 129 EEFLELDNDFHKVIFKAVNHDTIWDIISTTRIHYNRFRLLTMYEPEMMKKVYQEHFDIMN 188 Query: 180 LMVHKETAKIGPLIHHH 196 + + L+ H Sbjct: 189 KIEEGDKKGCNALLKQH 205 >A9IUN0.1 A9IUN0_BORPD Transcriptional regulator, GntR family Length = 234 Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 68/200 (34%), Positives = 110/200 (55%) Query: 6 EIMNTLKHEILTLALKPGTILSETALSERFQISRTPLRDVLKQLALESYTDIYPKKGNIV 65 ++ L+ I++L LKPG L+ L+E F +S+TP+RD L QL E DIYP+ V Sbjct: 22 QVFEKLRDLIVSLDLKPGEPLARGELAEAFGLSQTPIRDALSQLRDEGLVDIYPQHTTAV 81 Query: 66 SYIDLESVEQITYLRSTLEKEILKDLSSQLLLTGVHELKDILERQKEAIGHNDIDSFLNQ 125 S ID+ + Q +LR +LE EI++ L+ + V L+ ++RQ+ G + FL+ Sbjct: 82 SRIDIAAARQAHFLRRSLELEIVRVLAGRHDPALVERLRAHIDRQRANRGADRYQGFLDA 141 Query: 126 DDAFHRALYRLAGREFLWNLIQQSNVHYLRYRRLHMLKTEKLAGIWKEHQSLLELMVHKE 185 D AFHR ++ AG LW L Q+ + H R RRLH+ + K I ++HQ +++ + ++ Sbjct: 142 DRAFHREMHEAAGVAGLWELEQRYSGHVDRLRRLHLPEAGKADRILRDHQRIVDAIARQD 201 Query: 186 TAKIGPLIHHHLREDIHSLD 205 A + HL + +D Sbjct: 202 AAGAQEALREHLSGTLSQVD 221 >Q65L06.1 Q65L06_BACLD Putative uncharacterized protein Length = 225 Score = 120 bits (302), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 64/197 (32%), Positives = 109/197 (55%) Query: 2 SIKAEIMNTLKHEILTLALKPGTILSETALSERFQISRTPLRDVLKQLALESYTDIYPKK 61 S++ +I LK EI+ L PG +SE +SER+++SRTP+R+ QL+ E ++YP+K Sbjct: 10 SVRDQIYQVLKEEIMKFRLVPGEQISEKEISERYEVSRTPVREAFLQLSKEGLLEVYPQK 69 Query: 62 GNIVSYIDLESVEQITYLRSTLEKEILKDLSSQLLLTGVHELKDILERQKEAIGHNDIDS 121 G VS IDL+ VE+ ++R LEK + + + +L+ ++ Q+ +I + +S Sbjct: 70 GTRVSLIDLDLVEEARFMREKLEKAVAELACEDFPQEAMFKLEQNVKMQELSIAQKNYES 129 Query: 122 FLNQDDAFHRALYRLAGREFLWNLIQQSNVHYLRYRRLHMLKTEKLAGIWKEHQSLLELM 181 D+AFH+ ++ G+ +W IQQ NV + R R L + I ++H +L E + Sbjct: 130 LFELDEAFHQTIFEGCGKANVWAAIQQMNVPFQRIRFLRLAADFNWNTIHQQHAALTEAI 189 Query: 182 VHKETAKIGPLIHHHLR 198 K+ AK + HL+ Sbjct: 190 RTKQKAKAKEIAEEHLQ 206 >B9YDE6.1 B9YDE6_9FIRM Putative uncharacterized protein Length = 234 Score = 120 bits (301), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 69/202 (34%), Positives = 116/202 (57%), Gaps = 1/202 (0%) Query: 4 KAEIMNTLKHEILTLALKPGTILSETALSERFQISRTPLRDVLKQLALESYTDIYPKKGN 63 K EI N LK EI+ L ++PG ++SE +S RF++SRTP+RDV +L + ++ P++G Sbjct: 3 KLEIYNQLKEEIIDLKIEPGALISENEISRRFEVSRTPVRDVFLRLCNDGLLEVLPQRGT 62 Query: 64 IVSYIDLESVEQITYLRSTLEKEILKDLSSQLLLTGVHELKDILERQKEAIGHNDI-DSF 122 VS ID+E V +R+ +E +ILKD + + +LK LERQ++AI D F Sbjct: 63 KVSLIDMELVMATINMRTIVEIQILKDGIERRTPVQLQQLKMDLERQRQAIAQKRTPDEF 122 Query: 123 LNQDDAFHRALYRLAGREFLWNLIQQSNVHYLRYRRLHMLKTEKLAGIWKEHQSLLELMV 182 D FH ++ +AG+ +W +I Q VHY R+R L + + + EH+ ++E++ Sbjct: 123 YALDSEFHEHIFAIAGQRAMWQIINQMKVHYSRFRMLDVKANFSMNELLHEHEEIVEIVE 182 Query: 183 HKETAKIGPLIHHHLREDIHSL 204 ++ + G ++ +HL + L Sbjct: 183 KRQRERCGEVMRYHLEGGVRRL 204 >B0A7B2.1 B0A7B2_9CLOT Putative uncharacterized protein Length = 232 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 66/211 (31%), Positives = 116/211 (54%), Gaps = 12/211 (5%) Query: 1 MSIKAE------IMNTLKHEILTLALKPGTILSETALSERFQISRTPLRDVLKQLALESY 54 MSIK + L+ +IL+L L PG+ +SET ++ ++ +SRTP+RD K L+ E Sbjct: 1 MSIKKNNASSNIVYKGLRDDILSLKLIPGSAISETDIASKYNVSRTPVRDAFKALSNEGL 60 Query: 55 TDIYPKKGNIVSYIDLESVEQITYLRSTLEKEILKDLSSQLLLTGVHELKDILERQK--- 111 ++ P G VS +D+ + + Y+R +E ILKDL++ L LK L QK Sbjct: 61 LEVKPHVGTFVSLMDINQISDVLYVRKVVELSILKDLANSLTEADELRLKFNLNEQKIFL 120 Query: 112 --EAIGHNDIDSFLNQDDAFHRALYRLAGREFLWNLIQQSNVHYLRYRRLHMLKTE-KLA 168 A + ++ F+ D++FH+ ++ +AG+E +WN+I N HY R+R L L+ E + Sbjct: 121 LNTADSEDSVNDFIKYDNSFHKLIFHIAGKENIWNMILGMNQHYERFRSLINLQGENNIQ 180 Query: 169 GIWKEHQSLLELMVHKETAKIGPLIHHHLRE 199 +++EH + + + K+ + +I H+ + Sbjct: 181 KLYEEHCMIFDALTKKDVEALQTIISKHIYD 211 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,118,936,539 Number of extensions: 44900159 Number of successful extensions: 136702 Number of sequences better than 1.0e-05: 2214 Number of HSP's gapped: 136424 Number of HSP's successfully gapped: 2214 Length of query: 223 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 92 Effective length of database: 1,826,543,238 Effective search space: 168041977896 Effective search space used: 168041977896 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)