BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0225.0015.p (310 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K4V3.1 B3K4V3_9BACI ABC transporter related 305 3e-81 B1D4K7.1 B1D4K7_9BACL ABC transporter related 199 2e-49 Q1AZY1.1 Q1AZY1_RUBXD ABC transporter related 154 1e-35 O87563.1 O87563_BACFI ABC transporter ATP-binding protein 141 6e-32 C0VXJ6.1 C0VXJ6_9CORY ABC superfamily ATP binding cassette trans... 140 1e-31 >B3K4V3.1 B3K4V3_9BACI ABC transporter related Length = 300 Score = 305 bits (782), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 152/302 (50%), Positives = 195/302 (64%), Gaps = 6/302 (1%) Query: 1 MVQQAIELRNVSKKRRQGKTIGPLNLNLPQGYITALVGQNGSGKSTMLHMLLQLTFPDEG 60 M IE RNV K+RR KTIGP+ L++PQGYI ALVG NGSGKST+L+M++Q FPDEG Sbjct: 1 MEPHVIEFRNVIKRRRT-KTIGPIQLSIPQGYIVALVGPNGSGKSTLLNMMMQTVFPDEG 59 Query: 61 EIRWFEHSYADGLPLALRQRIAYVPENPQAEEKYWSAAEAAEFRRHWYPAWDQDFFEALL 120 EI WF SY LP+++R+++ +VPE EE++ + EAA FR WY WD FF+ LL Sbjct: 60 EITWFGESYRGELPVSIRKQMGFVPEQLSIEEQHMTVDEAASFRASWYDDWDGYFFDELL 119 Query: 121 AKFEVPEDAKLGKMSKGERRKFEIXXXXXXXXXXXXXDEPSSGLDPFAWKAMIETLRKYM 180 ++F+VP KL KMSKGERRKFEI DEPSSGLDPFAWK MI+ L K M Sbjct: 120 SRFDVPRGVKLRKMSKGERRKFEIAAALAPRPKFLLLDEPSSGLDPFAWKLMIDQLHKVM 179 Query: 181 DESGATVVISTHIVEEVRRLADYIVLMHHGQLLGMAEKDSLFGSWSEIWXXXXXXXXXXX 240 T+V+STH+V+E+RRLADY++L+HHG++LGM EKDSL +W E W Sbjct: 180 KSMDTTIVLSTHVVDEIRRLADYVILIHHGKMLGMVEKDSLLDNWRECW-----IQGDAS 234 Query: 241 XXXXXXXXXHFAIDTPGVASFITPQAQQNEKRVQDLGVKVIKSRILELDEILSLWTQGHR 300 F +T SFIT + + EK +Q G+ I++R LELDE+L LW G+ Sbjct: 235 IVKELPGILSFKQETASTISFITTECLEVEKILQSAGIPFIQTRSLELDEVLRLWIDGNM 294 Query: 301 PA 302 PA Sbjct: 295 PA 296 >B1D4K7.1 B1D4K7_9BACL ABC transporter related Length = 302 Score = 199 bits (507), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 112/304 (36%), Positives = 164/304 (53%), Gaps = 5/304 (1%) Query: 1 MVQQAIELRNVSKKRRQGKTIGPLNLNLPQGYITALVGQNGSGKSTMLHMLLQLTFPDEG 60 M + AI L+ V + RR +GP+ L +P+G +TA+VG NGSGKS+ ++L L P +G Sbjct: 1 MTEHAISLKEV-ELRRTHFQLGPIQLEVPKGCVTAIVGPNGSGKSSTFKLILDLIKPQKG 59 Query: 61 EIRWFEHSYADGLPLALRQRIAYVPENPQAEEKYWSAAEAAEFRRHWYPAWDQDFFEALL 120 +I+ + ++ + R+ ++PE + A+ F + WYP WD + ++ LL Sbjct: 60 DIKLLGKNISEDEDWQTKSRVGFLPELFSPHDNRLKASAKTAFVKKWYPEWDVNRYQELL 119 Query: 121 AKFEVPEDAKLGKMSKGERRKFEIXXXXXXXXXXXXXDEPSSGLDPFAWKAMIETLRKYM 180 FEV + KLGKMSKG RRK+E DEPSSGLDP AW+ MIE L +YM Sbjct: 120 RLFEVDDGIKLGKMSKGMRRKYEFALILSHHPELLLLDEPSSGLDPLAWRTMIEVLHRYM 179 Query: 181 DESGATVVISTHIVEEVRRLADYIVLMHHGQLLGMAEKDSLFGSWSEIWXXXXXXXXXXX 240 + T+++++HIVEEV+RLADYIV M HG++LG+ EKD LFGSW + Sbjct: 180 EPGDRTILMASHIVEEVKRLADYIVFMIHGRVLGVYEKDELFGSWHAFYVHGEQVNRKRV 239 Query: 241 XXXXXXXXXHFAIDT-PGVASFITPQAQQNEKRVQDLGVKVIKSRILELDEILSLWTQGH 299 DT G+ IT A E + + + L+LD+IL++ + Sbjct: 240 QAMPGQCGIE---DTGGGMLRVITRMAPDAEDWCGQEHITITHRQALQLDDILAILVEQE 296 Query: 300 RPAL 303 R L Sbjct: 297 RTRL 300 >Q1AZY1.1 Q1AZY1_RUBXD ABC transporter related Length = 308 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 88/283 (31%), Positives = 138/283 (48%), Gaps = 14/283 (4%) Query: 21 IGPLNLNLPQGYITALVGQNGSGKSTMLHMLLQLTFPDEGEIRWFEHSYADGLPLALRQR 80 +GP++L + GY+ ALVG NG GKST+ ML+ L PD GE+R F Y + +++R Sbjct: 30 LGPVSLRVEPGYVVALVGPNGGGKSTLFRMLMGLCRPDSGEVRLFGGRYPED-EARIKRR 88 Query: 81 IAYVPENPQAEEKYWSAAEAAEFRRHWYPAWDQDFFEALLAKFEVPEDAKLGKMSKGERR 140 + YVPE ++ A F WYP WD + LL + V G++S+G +R Sbjct: 89 VGYVPERAVGHDEM-DARALGRFLSRWYPGWDAGRYGELLDRLGVERKRPFGRLSRGMQR 147 Query: 141 KFEIXXXXXXXXXXXXXDEPSSGLDPFAWKAMIETLRKY-----MDESGATVVISTHIVE 195 + DEP+ G+DP A + MI+ + ++ G V+ +TH++E Sbjct: 148 RLLFAAALSCGPELLLLDEPTGGVDPLARREMIDEISRFARGEEGPGGGRAVIFATHVME 207 Query: 196 EVRRLADYIVLMHHGQLLGMAEKDSLFGSWSEIWXXXXXXXXXXXXXXXXXXXXHFAIDT 255 EV R ADY+ +H G+ G EKD L SW +W A++ Sbjct: 208 EVGRAADYVAFLHGGRFFGPYEKDRLAESWRRLWVGRPPGAGEAVPGL-------VAVEQ 260 Query: 256 PGVASFITPQAQQNEKRVQDLGVKVIKSRILELDEILSLWTQG 298 AS +T A Q +++ G++V+ R + L+EIL+ +G Sbjct: 261 GPPASLLTSSAAQARAALEERGIEVLGVRSVPLEEILAHLARG 303 >O87563.1 O87563_BACFI ABC transporter ATP-binding protein Length = 290 Score = 141 bits (356), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 88/290 (30%), Positives = 147/290 (50%), Gaps = 11/290 (3%) Query: 6 IELRNVSKKRRQGKTIGPLNLNLPQGYITALVGQNGSGKSTMLHMLLQLTFPDEGEIRWF 65 I L+++ KK + +GPL+ + G I ALVG NG+GKST+ +++L + GEI Sbjct: 2 ILLQDIYKKVDKSFELGPLSCQIEPGSIVALVGNNGAGKSTLFQTIMELVKKESGEI--- 58 Query: 66 EHSYADGLPLALRQRIAYVPENPQAEEKYWSAAEAAEFRRHWYPAWDQDFFEALLAKFEV 125 ++ + +Q AYVP+ P + + A+ A+F YP W+++ F+ L + F++ Sbjct: 59 DYHFGTDRENGWKQAFAYVPQTPLMYHGF-TIAQLADFFEMSYPGWNRNEFDRLTSLFDL 117 Query: 126 PEDAKLGKMSKGERRKFEIXXXXXXXXXXXXXDEPSSGLDPFAWKAMIETLRKYMDES-G 184 P ++ K+S G ++K + DEP +G+D + M + + +YM+ + Sbjct: 118 PLKKQVEKLSGGMQKKAMLSLTLARQSKVLLLDEPLAGVDFEGQEQMRDEMVRYMERAED 177 Query: 185 ATVVISTHIVEEVRRLADYIVLMHHGQLLGMAEKDSLFGSWSEIWXXXXXXXXXXXXXXX 244 T+++STH +E+R LADYI+LM G LL EKDSL SWS IW Sbjct: 178 QTILLSTHSADEIRTLADYILLMKEGHLLNQYEKDSLIASWSRIWVEGDTSALKNLKGMV 237 Query: 245 XXXXXHFAIDTPGVASFITPQAQQNEKRVQDLGVKVIKSRILELDEILSL 294 ++ +T A + E+ ++ +G V + LEL EIL + Sbjct: 238 STSKQGSLVEC------VTSNAFEVEQELKKMGATVTSVQPLELREILRI 281 >C0VXJ6.1 C0VXJ6_9CORY ABC superfamily ATP binding cassette transporter, ABC protein Length = 281 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 70/212 (33%), Positives = 116/212 (54%), Gaps = 2/212 (0%) Query: 14 KRRQGKTIGPLNLNLPQGYITALVGQNGSGKSTMLHMLLQLTFPDEGEIRWFEHSYADGL 73 K G T+GPLNL +PQG I VG+NG+GKST L ++L L PD G IR + G Sbjct: 11 KNYPGFTLGPLNLQVPQGSIVGFVGENGAGKSTTLRLILGLARPDAGTIRLLDQPAGPGH 70 Query: 74 PLALRQRIAYVPENPQAEEKYWSAAEAAEFRRHWYPAWDQDFFEALLAKFEVPEDAKLGK 133 P A R+R+ V ++ + + A EF + Y WD F + +F++ D ++ + Sbjct: 71 PEA-RERVGVVFDDISLPANF-TVKNACEFGKRLYKNWDSQVFASYRQRFQLASDKRVDQ 128 Query: 134 MSKGERRKFEIXXXXXXXXXXXXXDEPSSGLDPFAWKAMIETLRKYMDESGATVVISTHI 193 +S+G R K + DE +SGLDP +++ + +++++ +++ S+HI Sbjct: 129 LSRGMRMKLGLAMALSHAADLLIFDEATSGLDPVIRDEVLDIMLEFIEDPSHSILFSSHI 188 Query: 194 VEEVRRLADYIVLMHHGQLLGMAEKDSLFGSW 225 V ++ + ADYI +H+G+L M +KD L +W Sbjct: 189 VSDIEKAADYIAFIHNGKLKLMEQKDELLEAW 220 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.135 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,681,215,570 Number of extensions: 62547198 Number of successful extensions: 442465 Number of sequences better than 1.0e-05: 20272 Number of HSP's gapped: 437585 Number of HSP's successfully gapped: 20414 Length of query: 310 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 175 Effective length of database: 1,788,859,178 Effective search space: 313050356150 Effective search space used: 313050356150 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)