BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0225.0014.p
         (131 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K4V2.1 B3K4V2_9BACI Regulatory protein GntR HTH                     198   1e-49
B1D4K8.1 B1D4K8_9BACL Transcriptional regulator, GntR family          176   4e-43
Q5WB11.1 Q5WB11_BACSK GntR family transcriptional regulator           124   2e-27
Q1AZY2.1 Q1AZY2_RUBXD Transcriptional regulator, GntR family          119   7e-26
Q2B6X6.1 Q2B6X6_9BACI Transcriptional regulator (GntR family) pr...   119   8e-26

>B3K4V2.1 B3K4V2_9BACI Regulatory protein GntR HTH
          Length = 133

 Score =  198 bits (504), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 96/130 (73%), Positives = 112/130 (86%)

Query: 1   MWIPIQINENSAEPLYHQIETQLKSLIISGVITEGTLLPSIREFAGDLKCSVITVRRVYQ 60
           M + IQINENSAEPLYHQIETQL+SLIISG I EGTLLPSIREFAGDLKCSVITVRRVYQ
Sbjct: 1   MRLLIQINENSAEPLYHQIETQLRSLIISGQIEEGTLLPSIREFAGDLKCSVITVRRVYQ 60

Query: 61  DLENEGLLRTRQGTGTFVSHVGEGAMEGYKKEAIRKALENAVDVGLSVQCSEAELTELFT 120
           DLENEGLLRTRQGTGTFV+ VG+ A E YK++A+ +AL +AVD GL+VQ +E E+ E+F 
Sbjct: 61  DLENEGLLRTRQGTGTFVAGVGDQAREQYKRDAVIEALRDAVDKGLAVQFNEDEMKEMFM 120

Query: 121 EIVKHKYGTQ 130
           E+V+ KY  +
Sbjct: 121 EVVREKYDAK 130


>B1D4K8.1 B1D4K8_9BACL Transcriptional regulator, GntR family
          Length = 129

 Score =  176 bits (447), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 82/128 (64%), Positives = 104/128 (81%)

Query: 1   MWIPIQINENSAEPLYHQIETQLKSLIISGVITEGTLLPSIREFAGDLKCSVITVRRVYQ 60
           MW+PI INE SAEPLY+QIE QL++LI+SG + EG LLPSIRE A  LKCSVITVRRVYQ
Sbjct: 1   MWLPIHINEQSAEPLYYQIEVQLRALIVSGQLEEGILLPSIRELAQLLKCSVITVRRVYQ 60

Query: 61  DLENEGLLRTRQGTGTFVSHVGEGAMEGYKKEAIRKALENAVDVGLSVQCSEAELTELFT 120
           DLENEGLLRT+QGTGT+V+ + + AM+ Y+ +A+ +ALE AV+ G  VQC+  ELT+LF 
Sbjct: 61  DLENEGLLRTKQGTGTYVARIEQNAMDRYRLDAVTEALEAAVEAGKLVQCTREELTKLFQ 120

Query: 121 EIVKHKYG 128
           E++  K+G
Sbjct: 121 EVLDRKFG 128


>Q5WB11.1 Q5WB11_BACSK GntR family transcriptional regulator
          Length = 131

 Score =  124 bits (311), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 62/122 (50%), Positives = 83/122 (68%)

Query: 3   IPIQINENSAEPLYHQIETQLKSLIISGVITEGTLLPSIREFAGDLKCSVITVRRVYQDL 62
           +PIQ++E+S  P+Y QIE QLKSLI+SG +  GT LPSIR+ A  L CSVIT RR YQ+L
Sbjct: 5   LPIQLDESSRTPIYDQIEAQLKSLIVSGQLPAGTALPSIRKLAASLSCSVITTRRSYQNL 64

Query: 63  ENEGLLRTRQGTGTFVSHVGEGAMEGYKKEAIRKALENAVDVGLSVQCSEAELTELFTEI 122
           E +G ++T QG GTFVS +        K+EA++KALE A  VG S   S+ EL+  F  +
Sbjct: 65  EQKGYIKTIQGKGTFVSEMSMQDQSEQKQEAVQKALEQAAAVGRSYGYSKEELSNWFAAV 124

Query: 123 VK 124
           ++
Sbjct: 125 LE 126


>Q1AZY2.1 Q1AZY2_RUBXD Transcriptional regulator, GntR family
          Length = 128

 Score =  119 bits (299), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 57/117 (48%), Positives = 74/117 (63%)

Query: 10  NSAEPLYHQIETQLKSLIISGVITEGTLLPSIREFAGDLKCSVITVRRVYQDLENEGLLR 69
              EP+Y QIE QL+ LI+ G +  GT LP +R  A DL CSVIT RR YQDLE EGL+R
Sbjct: 2   EDPEPMYRQIEGQLRKLILGGHLPPGTRLPPVRALAQDLSCSVITTRRAYQDLEAEGLVR 61

Query: 70  TRQGTGTFVSHVGEGAMEGYKKEAIRKALENAVDVGLSVQCSEAELTELFTEIVKHK 126
           TRQG GT V+ +GE     +++ A+  A   AV+ GL   CS  EL E+F + V+ +
Sbjct: 62  TRQGLGTVVAEIGEEERARHRRSAVLAAFREAVESGLRAGCSPGELYEIFEQAVRQQ 118


>Q2B6X6.1 Q2B6X6_9BACI Transcriptional regulator (GntR family) protein
          Length = 131

 Score =  119 bits (298), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 57/124 (45%), Positives = 83/124 (66%)

Query: 1   MWIPIQINENSAEPLYHQIETQLKSLIISGVITEGTLLPSIREFAGDLKCSVITVRRVYQ 60
           M +PI++++ S  P+YHQIE Q+K+LI SGV+  G+ LPSIR  + DL+ SVIT RR YQ
Sbjct: 1   MELPIRLSKESRVPIYHQIEGQIKALIASGVLPAGSPLPSIRSLSKDLEVSVITTRRAYQ 60

Query: 61  DLENEGLLRTRQGTGTFVSHVGEGAMEGYKKEAIRKALENAVDVGLSVQCSEAELTELFT 120
           DLE +G + T QG GTFV+ V E      K  ++ +ALEN +   +S  C+  E+ E+F 
Sbjct: 61  DLEYKGFITTIQGKGTFVAEVAESEKADVKHSSVYQALENGIRTAMSYDCTLEEIEEIFH 120

Query: 121 EIVK 124
           ++V+
Sbjct: 121 KVVE 124


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.133    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 732,014,736
Number of extensions: 27735552
Number of successful extensions: 84460
Number of sequences better than 1.0e-05: 1282
Number of HSP's gapped: 84664
Number of HSP's successfully gapped: 1282
Length of query: 131
Length of database: 3,060,696,203
Length adjustment: 96
Effective length of query: 35
Effective length of database: 2,156,278,763
Effective search space: 75469756705
Effective search space used: 75469756705
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 125 (52.8 bits)