BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0225.0013.p
         (242 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K4V1.1 B3K4V1_9BACI Putative uncharacterized protein                173   1e-41
B1D4K9.1 B1D4K9_9BACL Putative uncharacterized protein                 82   3e-14
Q1AZY3.1 Q1AZY3_RUBXD Putative uncharacterized protein                 63   2e-08

>B3K4V1.1 B3K4V1_9BACI Putative uncharacterized protein
          Length = 241

 Score =  173 bits (439), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 90/241 (37%), Positives = 139/241 (57%), Gaps = 6/241 (2%)

Query: 3   TIKDAWVIVRSDFRADKLKLLRALIFAVLFTVYMSIFSEMIIGDVLESGD--GKVLADFL 60
            I +A  IV+ DF +DKL++    I+ +LF +YM   + ++I    E  D       DF+
Sbjct: 4   VIHNAMKIVKKDFASDKLQI----IWTILFMLYMGFATSVVINVQFEHLDEYNNPFVDFI 59

Query: 61  LISMTPMLGFTFSRRTMKYFSEDSYTRMLAYMRSLPVPAAVVLCKRKLHTVFSFTLNGVL 120
           ++   P +GF F+R++ KY +EDSYTRML + RS+PVPA+ +   R ++++ +F +N ++
Sbjct: 60  MVLFAPFVGFLFNRKSFKYLNEDSYTRMLYFYRSIPVPASAIFVSRIINSLIAFAINSIV 119

Query: 121 YFGLIYAMSGQLRSELSIPAYLAFALTWVGFALVLTGLYIFIELMVSGKTYCWXXXXXXX 180
           ++G+IYA+   LR  + IP+Y+AF LTWVG   +LTG YI+ E M SGK Y         
Sbjct: 120 FYGIIYAIGNHLRGVMDIPSYIAFMLTWVGVGFLLTGPYIYWENMCSGKVYLRNTVLMSL 179

Query: 181 XXXXXXXXXXXXXXXXFLYSIWYAKEWGLASPLMWATLLLGTVSVQLFSKWTIYRLKSRD 240
                           F ++   A +W L SP+MW +L+ G VS+ L SK T  R ++RD
Sbjct: 180 LLSGLIAVLSLLGYSIFEFAANAAMKWSLLSPVMWGSLIAGLVSMLLMSKLTYMRQQTRD 239

Query: 241 L 241
           L
Sbjct: 240 L 240


>B1D4K9.1 B1D4K9_9BACL Putative uncharacterized protein
          Length = 241

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 90/171 (52%), Gaps = 6/171 (3%)

Query: 1   MTTIKDAWVIVRSDFRADKLKLLRALIFAVLFTVYMSIFSEMIIGDVLESGDGKVLADFL 60
           M   + AW I + +   D + +L    F  LF++Y+++ +  +  D  E     VL D +
Sbjct: 1   MNLRQGAWHIAKHELTRDWMGIL----FTFLFSLYLALITIAVYNDT-ERIMSWVL-DMI 54

Query: 61  LISMTPMLGFTFSRRTMKYFSEDSYTRMLAYMRSLPVPAAVVLCKRKLHTVFSFTLNGVL 120
            I   P L F  ++ TM+++ ED++T  LA  R+LP+P + ++  R +  V    L   L
Sbjct: 55  FIVTFPSLAFVMNKTTMRFWREDTFTGKLAEWRTLPIPLSHLVIGRMVQLVIVLALVLTL 114

Query: 121 YFGLIYAMSGQLRSELSIPAYLAFALTWVGFALVLTGLYIFIELMVSGKTY 171
           +F   Y +  +L   LSI AYL FAL W  +AL +  LY++ E+  +GK Y
Sbjct: 115 FFTTQYILVDRLHDHLSIGAYLLFALFWYFYALSMAVLYVYFEIGHTGKAY 165


>Q1AZY3.1 Q1AZY3_RUBXD Putative uncharacterized protein
          Length = 244

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 59/114 (51%)

Query: 58  DFLLISMTPMLGFTFSRRTMKYFSEDSYTRMLAYMRSLPVPAAVVLCKRKLHTVFSFTLN 117
           DF  ++ T +L   F  R       D+++R LA++R LPV    ++  R L  + +  +N
Sbjct: 60  DFFFLAATSLLAGNFFSRDYALSWGDTFSRRLAFLRRLPVSPGEIVAGRVLSMLAAAVIN 119

Query: 118 GVLYFGLIYAMSGQLRSELSIPAYLAFALTWVGFALVLTGLYIFIELMVSGKTY 171
             L+F  +YA+SG L   L     + FA  W G AL   GLY+++E   SG+ Y
Sbjct: 120 VPLFFLALYALSGALGGLLEGTERVWFAGLWFGAALAWGGLYLYLETGTSGRVY 173


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.331    0.141    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,227,285,922
Number of extensions: 42665766
Number of successful extensions: 132401
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 132398
Number of HSP's successfully gapped: 3
Length of query: 242
Length of database: 3,060,696,203
Length adjustment: 132
Effective length of query: 110
Effective length of database: 1,817,122,223
Effective search space: 199883444530
Effective search space used: 199883444530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 129 (54.3 bits)