BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0225.0011.p (154 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K4V0.1 B3K4V0_9BACI Putative uncharacterized protein 236 3e-61 B1D4L0.1 B1D4L0_9BACL Putative uncharacterized protein 207 2e-52 Q2B4U4.1 Q2B4U4_9BACI Putative uncharacterized protein 180 3e-44 A6CN17.1 A6CN17_9BACI Putative uncharacterized protein 180 4e-44 C5D8J2.1 C5D8J2_9BACI Putative uncharacterized protein 171 1e-41 >B3K4V0.1 B3K4V0_9BACI Putative uncharacterized protein Length = 154 Score = 236 bits (603), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 117/153 (76%), Positives = 131/153 (85%) Query: 1 MDIFTVFPTISTSFIVISAVLVAIGWRLIIKGKREAHKKTMXXXXXXXVLFFIVYMSRTV 60 MD F +FPT+ST+FIVISAVLVAIGW LIIKGKREAHKK M V+FFI+Y SRTV Sbjct: 1 MDWFFIFPTVSTTFIVISAVLVAIGWGLIIKGKREAHKKVMIWAAIAAVIFFIIYSSRTV 60 Query: 61 FVGNTSWGGPEDLSLLYHIFLIFHIVLATVAAVFGITTLTLGFKAKYAKHRKWGRVTSVI 120 F+GNTSWGGP+DL Y IFLIFHIVLATVAAVFGITTL LGFK K++KHRKWG+VTS+I Sbjct: 61 FIGNTSWGGPDDLKPYYQIFLIFHIVLATVAAVFGITTLVLGFKEKFSKHRKWGKVTSII 120 Query: 121 WFITAITGVAVYVLLYIFYPGGHTKPVWEVILG 153 WF TAITGVAVY LLY+ YPGGHT+PVW+VI G Sbjct: 121 WFFTAITGVAVYTLLYLLYPGGHTQPVWKVIFG 153 >B1D4L0.1 B1D4L0_9BACL Putative uncharacterized protein Length = 154 Score = 207 bits (528), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 108/153 (70%), Positives = 123/153 (80%) Query: 1 MDIFTVFPTISTSFIVISAVLVAIGWRLIIKGKREAHKKTMXXXXXXXVLFFIVYMSRTV 60 MD +T+FPTISTSFIVISA+LVAIGW L IK + + HKK M ++FFI+Y SRTV Sbjct: 1 MDKYTIFPTISTSFIVISAILVAIGWNLAIKRRLDQHKKVMIAAAIAALIFFIIYSSRTV 60 Query: 61 FVGNTSWGGPEDLSLLYHIFLIFHIVLATVAAVFGITTLTLGFKAKYAKHRKWGRVTSVI 120 VGNT WGGP+ L Y FL+FHIVLATVAAVFGITTL LGF+ KYAKHRKWG+VTSVI Sbjct: 61 LVGNTEWGGPDSLKPYYLTFLLFHIVLATVAAVFGITTLVLGFREKYAKHRKWGKVTSVI 120 Query: 121 WFITAITGVAVYVLLYIFYPGGHTKPVWEVILG 153 WF TAITGVAVY+LLY+ YPGGHTKPV + I G Sbjct: 121 WFFTAITGVAVYILLYMMYPGGHTKPVIDAIFG 153 >Q2B4U4.1 Q2B4U4_9BACI Putative uncharacterized protein Length = 155 Score = 180 bits (457), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 92/148 (62%), Positives = 111/148 (75%) Query: 6 VFPTISTSFIVISAVLVAIGWRLIIKGKREAHKKTMXXXXXXXVLFFIVYMSRTVFVGNT 65 V PTIST+FIV+SAV VAIGW I + K EAHKKTM ++FFI+Y SRTVF+GNT Sbjct: 7 VLPTISTTFIVLSAVTVAIGWYQIRQRKIEAHKKTMLLAAVFAIIFFIIYASRTVFIGNT 66 Query: 66 SWGGPEDLSLLYHIFLIFHIVLATVAAVFGITTLTLGFKAKYAKHRKWGRVTSVIWFITA 125 ++GGP+D+ + Y +FLIFHI LAT AVFGI TL G+ K KHRK G +TS+IWF TA Sbjct: 67 AFGGPDDIKIYYTLFLIFHITLATTGAVFGIVTLLTGYTNKLEKHRKIGPITSIIWFFTA 126 Query: 126 ITGVAVYVLLYIFYPGGHTKPVWEVILG 153 ITGVAVY+LLY+FY GG T V + ILG Sbjct: 127 ITGVAVYLLLYVFYHGGETTSVIKAILG 154 >A6CN17.1 A6CN17_9BACI Putative uncharacterized protein Length = 153 Score = 180 bits (456), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 90/148 (60%), Positives = 112/148 (75%) Query: 6 VFPTISTSFIVISAVLVAIGWRLIIKGKREAHKKTMXXXXXXXVLFFIVYMSRTVFVGNT 65 + PTIST+FIV+SA+ VAIGW I + K EAHKKTM ++FFI+YMSRT+FVGNT Sbjct: 5 ILPTISTTFIVLSAITVAIGWWQIKQRKIEAHKKTMFTAAVFALIFFIIYMSRTIFVGNT 64 Query: 66 SWGGPEDLSLLYHIFLIFHIVLATVAAVFGITTLTLGFKAKYAKHRKWGRVTSVIWFITA 125 S+GGPED+ + Y +FLIFHI LAT AVFG+ T+ G+K Y +HRK G +TS+IWF TA Sbjct: 65 SFGGPEDIKIYYTLFLIFHITLATTGAVFGLVTIWSGYKENYKRHRKLGPITSIIWFFTA 124 Query: 126 ITGVAVYVLLYIFYPGGHTKPVWEVILG 153 TGVAVY+LLY+FY GG T V + ILG Sbjct: 125 TTGVAVYLLLYVFYKGGETTSVIKAILG 152 >C5D8J2.1 C5D8J2_9BACI Putative uncharacterized protein Length = 155 Score = 171 bits (434), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 86/148 (58%), Positives = 110/148 (74%) Query: 6 VFPTISTSFIVISAVLVAIGWRLIIKGKREAHKKTMXXXXXXXVLFFIVYMSRTVFVGNT 65 + PTISTS IVISA LVA GW LI++ +AHKKTM +LFFI+Y+SRT+F+GNT Sbjct: 7 ILPTISTSCIVISAALVAYGWYLILRRNIDAHKKTMLSAAVFALLFFIIYLSRTIFIGNT 66 Query: 66 SWGGPEDLSLLYHIFLIFHIVLATVAAVFGITTLTLGFKAKYAKHRKWGRVTSVIWFITA 125 S+GGP+ + + Y IFL+FHI+LATV A+FGI TL G K A+H++ G +TSVIWF TA Sbjct: 67 SFGGPDSVKVYYTIFLVFHIILATVGAIFGIVTLWTGLKDHRARHKRLGPITSVIWFFTA 126 Query: 126 ITGVAVYVLLYIFYPGGHTKPVWEVILG 153 TGV VY+LLY+FY GG T + + ILG Sbjct: 127 ATGVIVYLLLYVFYKGGETTSMIKAILG 154 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.332 0.144 0.459 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 846,993,822 Number of extensions: 28916291 Number of successful extensions: 91602 Number of sequences better than 1.0e-05: 215 Number of HSP's gapped: 91575 Number of HSP's successfully gapped: 215 Length of query: 154 Length of database: 3,060,696,203 Length adjustment: 116 Effective length of query: 38 Effective length of database: 1,967,858,463 Effective search space: 74778621594 Effective search space used: 74778621594 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 125 (52.8 bits)