BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0225.0010.p (382 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K4U9.1 B3K4U9_9BACI Cytochrome c oxidase assembly factor CtaG 404 e-111 B1D4L1.1 B1D4L1_9BACL Cytochrome c oxidase assembly factor CtaG 298 6e-79 C2WB74.1 C2WB74_BACCE Putative uncharacterized protein 256 4e-66 C3B727.1 C3B727_BACMY Putative uncharacterized protein 249 2e-64 C3APP3.1 C3APP3_BACMY Putative uncharacterized protein 249 2e-64 >B3K4U9.1 B3K4U9_9BACI Cytochrome c oxidase assembly factor CtaG Length = 302 Score = 404 bits (1038), Expect = e-111, Method: Compositional matrix adjust. Identities = 197/297 (66%), Positives = 236/297 (79%), Gaps = 6/297 (2%) Query: 76 MLGLSYFSFAELWSPLFLAVMLLLTAGYFVLIGPLSGRFQGSSQVPLWRRXXXXG-MLAL 134 MLGL YFSFA+ WSPLFLA MLL+TAGYF+L GPLS RF+GS+ V R+ G ML Sbjct: 1 MLGLEYFSFADKWSPLFLAFMLLVTAGYFLLTGPLSSRFEGSAPVSAGRKTLFVGGMLTF 60 Query: 135 YLAQGGPLSLLGHILFSFHMASMAFSYLVAVPLIMLGIPDWCWRALLKGLLRPLRRVSFL 194 YLAQGGP+ LLGH +FSFHM SMA SYL+AVPL++LGIP W WRA K + P +++ FL Sbjct: 61 YLAQGGPIELLGHTMFSFHMVSMAMSYLMAVPLLILGIPVWMWRAFDK--VNPFKKLGFL 118 Query: 195 AHPVVAALLFNGLFSLYHIPVIHDYVMLHFAVHRLYYAVLFLTSALMWWNLINPLPELRS 254 A P+VAA+LFNGLFS YHIPVIHD+VML+F VHRLYY +LF+ S LMWW +I P+PE Sbjct: 119 ARPIVAAVLFNGLFSFYHIPVIHDFVMLNFWVHRLYYLILFIASLLMWWAIIKPIPEKDK 178 Query: 255 INGLGQIGFIFLNMVLLTPACGLIIFAGEPLYATYSDPQTWARAMGYCVSGSPAELLQAF 314 +GL ++G+IFLNMVLLTPACGLIIF+ EP+YATYSDP WA+AMGYCV+G + LL F Sbjct: 179 SSGLMKMGYIFLNMVLLTPACGLIIFSSEPMYATYSDPVVWAKAMGYCVAGDTSALLSQF 238 Query: 315 GGPSFFGWLSPKVDQQVGGIAMKFIQEFIFASMLAYVFYHWYKKENGQDD---AEVP 368 GGP FFG+L P +DQ+VGGI MKF QE IFASMLAYVF+HWYK+EN +DD E+P Sbjct: 239 GGPEFFGYLEPAIDQRVGGIIMKFFQEIIFASMLAYVFFHWYKRENQEDDPLPGEIP 295 >B1D4L1.1 B1D4L1_9BACL Cytochrome c oxidase assembly factor CtaG Length = 309 Score = 298 bits (763), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 142/303 (46%), Positives = 200/303 (66%), Gaps = 6/303 (1%) Query: 76 MLGLSYFSFAELWSPLFLAVMLLLTAGYFVLIGPLSGRFQ-GSSQVPLWRRXX-XXGMLA 133 MLGL YFSF ELW+P FL M+ L YF LIGP + + + +W++ + Sbjct: 1 MLGLKYFSFEELWTPWFLFFMIALVILYFYLIGPWREKHAPHTDKATVWQKIMFVSAAVM 60 Query: 134 LYLAQGGPLSLLGHILFSFHMASMAFSYLVAVPLIMLGIPDWCWRALLKGLLRPLRRVSF 193 YL QGGP SLLGH++F+FHM M+ SYL+ P+++L +P + W+ + + +++ F Sbjct: 61 FYLVQGGPFSLLGHMMFTFHMIDMSVSYLIVPPMLLLSVPAFIWQRMFAA--QGWKKLRF 118 Query: 194 LAHPVVAALLFNGLFSLYHIPVIHDYVMLHFAVHRLYYAVLFLTSALMWWNLINPLPELR 253 + HP+ A L FN LFSLYH+P+++DYVM HF +HRL Y +L + + LMW + NP+PE Sbjct: 119 MTHPIAAILTFNMLFSLYHVPLLNDYVMTHFWLHRLVYVILLIAAMLMWAQIANPVPEWN 178 Query: 254 SINGLGQIGFIFLNMVLLTPACGLIIFAGEPLYATYSDPQTWARAMGYCVSGSPAELLQA 313 + L ++ ++F N VLLTPAC IIFA P+YA YSDP TW +AMGYCVS P++LL Sbjct: 179 RLTDLKKMAYVFANGVLLTPACAFIIFASTPMYAVYSDPDTWVKAMGYCVS-DPSQLLAL 237 Query: 314 FGGPSFFGWL-SPKVDQQVGGIAMKFIQEFIFASMLAYVFYHWYKKENGQDDAEVPAPSS 372 F GP FF L SP+ DQQ+GGI MK +QEF++ +LAY+FYHW+K+E+ DD + Sbjct: 238 FDGPQFFNLLASPEEDQQLGGIVMKLLQEFMYGVILAYIFYHWFKREHKDDDVTNATNEA 297 Query: 373 ELE 375 +E Sbjct: 298 PIE 300 >C2WB74.1 C2WB74_BACCE Putative uncharacterized protein Length = 301 Score = 256 bits (653), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 129/306 (42%), Positives = 190/306 (62%), Gaps = 9/306 (2%) Query: 76 MLGLSYFSFAELWSPLFLAVMLLLTAGYFVLIGPLSGRFQGSSQV-PLWRRXXXXGMLAL 134 M L F F LWSP+FL M+ + GYF++IGP RFQ + +V + G++ L Sbjct: 1 MSNLWVFGFEALWSPIFLLFMVSILIGYFLIIGPYKNRFQHAEKVSKIQMFYFTTGIVLL 60 Query: 135 YLAQGGPLSLLGHILFSFHMASMAFSYLVAVPLIMLGIPDWCWRALLKGLLRPLRRV-SF 193 Y +GGP+ LLGHI+FS HM MA Y+ PL++LGIP W +R + R ++ + + Sbjct: 61 YFVKGGPIDLLGHIIFSAHMFEMAVMYIAVPPLLLLGIPVWLYRYITS--FRFIKIILNI 118 Query: 194 LAHPVVAALLFNGLFSLYHIPVIHDYVMLHFAVHRLYYAVLFLTSALMWWNLINPLPELR 253 P++A +FNGLFS+YH+PV+ D V + H ++ AVLF T+ +MWW ++NPLPE + Sbjct: 119 FTKPLIALFVFNGLFSIYHLPVVFDTVKQNQVAHPIFLAVLFFTAMMMWWPMLNPLPEYQ 178 Query: 254 SINGLGQIGFIFLNMVLLTPACGLIIFAGEPLYATYSDPQTWARAMGYCVSGSPAELLQA 313 +++ + +IG++F N VLLTPAC LIIFA E L+ TY+DP W +AM CV PA +L Sbjct: 179 TLSEIKKIGYMFANGVLLTPACALIIFASESLFVTYTDPSAWMKAMELCV---PAGMLTD 235 Query: 314 FG--GPSFFGWLSPKVDQQVGGIAMKFIQEFIFASMLAYVFYHWYKKENGQDDAEVPAPS 371 GP F W+ DQQ GGI MK +QE ++ +++ YVF+ W +KE +D ++ A Sbjct: 236 LNITGPEFLHWMPIVQDQQTGGIIMKIVQEIVYGTIIGYVFFKWARKERKKDKEQLQAVP 295 Query: 372 SELEER 377 L+ + Sbjct: 296 PYLQTK 301 >C3B727.1 C3B727_BACMY Putative uncharacterized protein Length = 301 Score = 249 bits (637), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 124/298 (41%), Positives = 188/298 (63%), Gaps = 5/298 (1%) Query: 82 FSFAELWSPLFLAVMLLLTAGYFVLIGPLSGRFQGSSQVPLWRRXX-XXGMLALYLAQGG 140 F F LWSP+FL M+ + YF++IGP RF+ + +V + G++ LYL +GG Sbjct: 7 FGFQALWSPIFLLFMVSILICYFLIIGPYRNRFENAEKVNKKQMFYFTTGIILLYLVKGG 66 Query: 141 PLSLLGHILFSFHMASMAFSYLVAVPLIMLGIPDWCWRALLKGLLRPLRRVSFLAHPVVA 200 P+ LLGHI+FS HM MA Y+ PL++LGIP W + + + + F P++A Sbjct: 67 PIDLLGHIVFSAHMFEMAVMYIAVPPLLLLGIPVWLYTYITSFRFIQVILIMF-TKPLIA 125 Query: 201 ALLFNGLFSLYHIPVIHDYVMLHFAVHRLYYAVLFLTSALMWWNLINPLPELRSINGLGQ 260 +FNGLFS+YH+PV+ D V + H ++ AVLF T+ +MWW ++NPLPE ++++ + + Sbjct: 126 LFVFNGLFSIYHLPVVFDAVKQNQVAHPIFLAVLFFTAMMMWWPMLNPLPEYQTLSEIKK 185 Query: 261 IGFIFLNMVLLTPACGLIIFAGEPLYATYSDPQTWARAMGYCV-SGSPAELLQAFGGPSF 319 IG++F N VLLTPAC LIIFA E L+ATY+DP W +AM CV +G+ ++L GP F Sbjct: 186 IGYMFANGVLLTPACALIIFASESLFATYTDPSAWMKAMELCVPAGTLSDL--NITGPEF 243 Query: 320 FGWLSPKVDQQVGGIAMKFIQEFIFASMLAYVFYHWYKKENGQDDAEVPAPSSELEER 377 W+ DQQ GGI MK +QE ++ +++ YVF+ W +KE +D+ ++ L+ + Sbjct: 244 LHWMPIVQDQQTGGIIMKIVQEIVYGTIIGYVFFKWARKERKKDEEQLQKVPPYLQPK 301 >C3APP3.1 C3APP3_BACMY Putative uncharacterized protein Length = 301 Score = 249 bits (637), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 124/298 (41%), Positives = 188/298 (63%), Gaps = 5/298 (1%) Query: 82 FSFAELWSPLFLAVMLLLTAGYFVLIGPLSGRFQGSSQVPLWRRXX-XXGMLALYLAQGG 140 F F LWSP+FL M+ + YF++IGP RF+ + +V + G++ LYL +GG Sbjct: 7 FGFQALWSPIFLLFMVSILICYFLIIGPYRNRFENAEKVNKKQMFYFTTGIILLYLVKGG 66 Query: 141 PLSLLGHILFSFHMASMAFSYLVAVPLIMLGIPDWCWRALLKGLLRPLRRVSFLAHPVVA 200 P+ LLGHI+FS HM MA Y+ PL++LGIP W + + + + F P++A Sbjct: 67 PIDLLGHIVFSAHMFEMAVMYIAVPPLLLLGIPVWLYTYITSFRFIQVILIMF-TKPLIA 125 Query: 201 ALLFNGLFSLYHIPVIHDYVMLHFAVHRLYYAVLFLTSALMWWNLINPLPELRSINGLGQ 260 +FNGLFS+YH+PV+ D V + H ++ AVLF T+ +MWW ++NPLPE ++++ + + Sbjct: 126 LFVFNGLFSIYHLPVVFDAVKQNQVAHPIFLAVLFFTAMMMWWPMLNPLPEYQTLSEIKK 185 Query: 261 IGFIFLNMVLLTPACGLIIFAGEPLYATYSDPQTWARAMGYCV-SGSPAELLQAFGGPSF 319 IG++F N VLLTPAC LIIFA E L+ATY+DP W +AM CV +G+ ++L GP F Sbjct: 186 IGYMFANGVLLTPACALIIFASESLFATYTDPSAWMKAMELCVPAGTLSDL--NITGPEF 243 Query: 320 FGWLSPKVDQQVGGIAMKFIQEFIFASMLAYVFYHWYKKENGQDDAEVPAPSSELEER 377 W+ DQQ GGI MK +QE ++ +++ YVF+ W +KE +D+ ++ L+ + Sbjct: 244 LHWMPIVQDQQTGGIIMKIVQEIVYGTIIGYVFFKWARKERKKDEEQLQKVPPYLQPK 301 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.145 0.465 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,134,955,980 Number of extensions: 89067863 Number of successful extensions: 328939 Number of sequences better than 1.0e-05: 168 Number of HSP's gapped: 328612 Number of HSP's successfully gapped: 168 Length of query: 382 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 245 Effective length of database: 1,770,017,148 Effective search space: 433654201260 Effective search space used: 433654201260 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 132 (55.5 bits)