BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0225.0009.p
         (108 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K4U8.1 B3K4U8_9BACI Cytochrome C oxidase subunit IV                 134   4e-30
B1D4L2.1 B1D4L2_9BACL Cytochrome C oxidase subunit IV                  88   3e-16
B9EB31.1 B9EB31_MACCJ Putative uncharacterized protein                 56   1e-06

>B3K4U8.1 B3K4U8_9BACI Cytochrome C oxidase subunit IV
          Length = 107

 Score =  134 bits (336), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 64/107 (59%), Positives = 73/107 (68%)

Query: 1   MATEQHSASSGAVKHRHRQEGPQRHIVVFAFSXXXXXXXXXXXXXXXXXXXXXXILLLVM 60
           M   Q S     VKHRHR EGP++HIVVF FS                      ILLLVM
Sbjct: 1   MTANQQSNEGPTVKHRHRVEGPEKHIVVFIFSIVLTAIAFAAVAAGGINTAFTIILLLVM 60

Query: 61  AVLQVFLQMGFWMHLKDKGHLLPIIFMLGGFFIAGTCIVMALYWVWW 107
           AVLQVF+QMG+WMHLKDKGHL+PI+FM+GGFF+A TCIVMAL+WVWW
Sbjct: 61  AVLQVFVQMGYWMHLKDKGHLMPILFMIGGFFVASTCIVMALFWVWW 107


>B1D4L2.1 B1D4L2_9BACL Cytochrome C oxidase subunit IV
          Length = 105

 Score = 87.8 bits (216), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 44/107 (41%), Positives = 59/107 (55%), Gaps = 2/107 (1%)

Query: 1   MATEQHSASSGAVKHRHRQEGPQRHIVVFAFSXXXXXXXXXXXXXXXXXXXXXXILLLVM 60
           MA+   +     V  RH+ EGP++HIV F FS                      I+L+  
Sbjct: 1   MASNHTTEEQRPV--RHKVEGPKKHIVAFIFSILLTLIAFAAVAGGEINTDFIYIILIGC 58

Query: 61  AVLQVFLQMGFWMHLKDKGHLLPIIFMLGGFFIAGTCIVMALYWVWW 107
           A+LQVF+QM FWMH+KD+GH   II +L G F+  TC++MA YW WW
Sbjct: 59  AILQVFVQMAFWMHMKDRGHTFAIIGILFGVFVVFTCVIMAEYWAWW 105


>B9EB31.1 B9EB31_MACCJ Putative uncharacterized protein
          Length = 115

 Score = 55.8 bits (133), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/50 (54%), Positives = 37/50 (74%)

Query: 57  LLVMAVLQVFLQMGFWMHLKDKGHLLPIIFMLGGFFIAGTCIVMALYWVW 106
           +L++A++QV LQ  ++MH+K KGH    +FML G FIAG+ IVMALY  W
Sbjct: 60  VLLLALIQVILQFYYFMHMKHKGHGTAQLFMLTGLFIAGSFIVMALYLTW 109


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.334    0.143    0.490 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 476,939,790
Number of extensions: 11459264
Number of successful extensions: 52959
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 52963
Number of HSP's successfully gapped: 4
Length of query: 108
Length of database: 3,060,696,203
Length adjustment: 76
Effective length of query: 32
Effective length of database: 2,344,699,063
Effective search space: 75030370016
Effective search space used: 75030370016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 125 (52.8 bits)