BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0225.0007.p (619 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K4U6.1 B3K4U6_9BACI Cytochrome c oxidase, subunit I EC=1.9.3.1 1034 0.0 B1D4L4.1 B1D4L4_9BACL Cytochrome c oxidase, subunit I EC=1.9.3.1 955 0.0 C0Z581.1 C0Z581_BREBN Cytochrome c oxidase polypeptide I EC=1.9.3.1 892 0.0 B7GGL9.1 B7GGL9_ANOFW Cytochrome caa3 oxidase (Subunit I) 853 0.0 Q2B4U9.1 Q2B4U9_9BACI Cytochrome c oxidase subunit I 852 0.0 >B3K4U6.1 B3K4U6_9BACI Cytochrome c oxidase, subunit I EC=1.9.3.1 Length = 632 Score = 1034 bits (2673), Expect = 0.0, Method: Compositional matrix adjust. Identities = 523/619 (84%), Positives = 571/619 (92%) Query: 1 VKRHTGLMDWITTVDHKKIAILYLWAGGLFFGIGGLEAILIRIQLIKPMNTFLDAQTFNE 60 VKR+TG+MDW+TTVDHKKI ILYL AGG FFGIGG+EAILIR+QLIKPMN + AQ FNE Sbjct: 11 VKRYTGIMDWLTTVDHKKIGILYLIAGGFFFGIGGIEAILIRLQLIKPMNDLVSAQVFNE 70 Query: 61 LITMHGTTMIFLGVMPVIFALMNAVIPLQIGARDVAFPFLNALGFWTFLFGGVLLNLSWI 120 LITMHGTTMIFLGVMPVIFALMNAVIPLQIGARDVAFPFLN+LGFWTFLFGG+LLNLSWI Sbjct: 71 LITMHGTTMIFLGVMPVIFALMNAVIPLQIGARDVAFPFLNSLGFWTFLFGGLLLNLSWI 130 Query: 121 MGGAPDAGWTSYTPLSTTQYSGTHGVDFYTIGLQIAGLGTLIGGINFLATIITMRAPGMS 180 MGGAPDAGWTSYTPLST YS THGVDFYTIGLQIAGLGTLIGGINFLATIITMRAPGMS Sbjct: 131 MGGAPDAGWTSYTPLSTNDYSSTHGVDFYTIGLQIAGLGTLIGGINFLATIITMRAPGMS 190 Query: 181 FMRMPMFVWASFITSAIILFAFPAITVGLVLLTFDRILEANFFDTSAGGNSVLWQHIFWI 240 FMRMPMF W +FITSA+ILFAFPAITVGLVLL+FDR+L ANFFD +AGG+ VLWQHIFWI Sbjct: 191 FMRMPMFTWTAFITSAMILFAFPAITVGLVLLSFDRLLGANFFDVAAGGSPVLWQHIFWI 250 Query: 241 FGHPEVYILILPAFGIISEVIPTFARKRLFGYSSMVFATILIAFLGFMVWAHHMFTTGLG 300 FGHPEVYILILPAFGIISEVIPTF+RKRLFGYSSMVFATILIAFLGFMVWAHHMFTTGLG Sbjct: 251 FGHPEVYILILPAFGIISEVIPTFSRKRLFGYSSMVFATILIAFLGFMVWAHHMFTTGLG 310 Query: 301 PVANALFSVSTMLIAVPTGIKIFNWLFTMWGGQVRFTSPNLFAVGFIPTFTMGGVTGVML 360 PVANALFS++TMLIAVPTGIKIFNWLFTMWGGQ+RFTS NLFA+GF+PTF MGGVTGVML Sbjct: 311 PVANALFSIATMLIAVPTGIKIFNWLFTMWGGQIRFTSANLFAIGFVPTFVMGGVTGVML 370 Query: 361 ASAPADFQFHDTYFVVAHFHYVIVGGLVSGLFAGLHYWWPKMFGRMLSETLGKWTFWTFI 420 ASAPADFQFHDTYFVVAHFHYVIVGGLV GLFAGLHYWWPKMFGRML+ETLGKWTFW F Sbjct: 371 ASAPADFQFHDTYFVVAHFHYVIVGGLVFGLFAGLHYWWPKMFGRMLNETLGKWTFWLFA 430 Query: 421 IGFHLTFFVQHFLGLMGMQRRVFTYLPNQQFDLLNLISTIGAGLMGVGVLIFLTNIFLTS 480 IGFH+TFFVQHFLGL+GMQRR+ +YLPNQ FD LN ISTIGA LMG+GVL+FL NI +T+ Sbjct: 431 IGFHMTFFVQHFLGLLGMQRRIVSYLPNQNFDELNFISTIGAILMGIGVLLFLANIAVTT 490 Query: 481 RKPADAPDDPWEDGRTLEWTISSPPPEYNFKQTPLVRGLDAFWKEKTSGHKTMTPAEPVG 540 RKP DPWEDGRTLEW+I SPPPEYNFKQ PLVRG+DA+WKEK +G+K MTP+EPVG Sbjct: 491 RKPVGVAADPWEDGRTLEWSIPSPPPEYNFKQIPLVRGIDAYWKEKMAGNKEMTPSEPVG 550 Query: 541 PIHMPSATILPFLMSVGIFIAGLGFMFSRDDFGNAFMGFLFNNYLVTAIGLVITFGSMLL 600 PIHMPS +ILPF+MS+G+FIAGLGFMFS +DF N+FM +FN Y+V +GL+ITF +M+ Sbjct: 551 PIHMPSPSILPFVMSLGLFIAGLGFMFSTEDFSNSFMSLIFNKYIVLIVGLLITFAAMIA 610 Query: 601 RSLYDDHGWHIEPEELEGR 619 RSLYDDHG+HIE EELEG Sbjct: 611 RSLYDDHGYHIEVEELEGE 629 >B1D4L4.1 B1D4L4_9BACL Cytochrome c oxidase, subunit I EC=1.9.3.1 Length = 627 Score = 955 bits (2468), Expect = 0.0, Method: Compositional matrix adjust. Identities = 462/619 (74%), Positives = 533/619 (86%), Gaps = 2/619 (0%) Query: 1 VKRHTGLMDWITTVDHKKIAILYLWAGGLFFGIGGLEAILIRIQLIKPMNTFLDAQTFNE 60 VKR++GLMDW+TTVDHKKI ILYL AGG FF +GGLEA+LIRIQL KP+N F+ A T+NE Sbjct: 7 VKRYSGLMDWLTTVDHKKIGILYLIAGGFFFLVGGLEALLIRIQLWKPLNDFVSADTYNE 66 Query: 61 LITMHGTTMIFLGVMPVIFALMNAVIPLQIGARDVAFPFLNALGFWTFLFGGVLLNLSWI 120 L+TMHGTTMIFL MPVIFALMNA++PLQIGARDVA+PF+NA+GFWTF FG VLLN+SW Sbjct: 67 LLTMHGTTMIFLAAMPVIFALMNAIVPLQIGARDVAYPFVNAIGFWTFFFGAVLLNVSWF 126 Query: 121 MGGAPDAGWTSYTPLSTTQYSGTHGVDFYTIGLQIAGLGTLIGGINFLATIITMRAPGMS 180 G APD GWT+Y PLS T ++G HG D+Y +GLQIAG+GTL+GGINFL TII MRAPGM+ Sbjct: 127 TGAAPDGGWTAYAPLSGTTFNGDHGFDYYVLGLQIAGIGTLVGGINFLVTIINMRAPGMT 186 Query: 181 FMRMPMFVWASFITSAIILFAFPAITVGLVLLTFDRILEANFFDTSAGGNSVLWQHIFWI 240 FMRMPMF W+ FITSA+ILFAFPA+TVGL L FDRI +ANFFD S GGN+VLW+HIFWI Sbjct: 187 FMRMPMFTWSVFITSALILFAFPALTVGLAALMFDRIFDANFFDPSGGGNAVLWEHIFWI 246 Query: 241 FGHPEVYILILPAFGIISEVIPTFARKRLFGYSSMVFATILIAFLGFMVWAHHMFTTGLG 300 FGHPEVYILILPAFG+ISEV+ TF+RKRLFGYSSMVFATILI FLGFMVWAHHMFTTGLG Sbjct: 247 FGHPEVYILILPAFGVISEVVSTFSRKRLFGYSSMVFATILIGFLGFMVWAHHMFTTGLG 306 Query: 301 PVANALFSVSTMLIAVPTGIKIFNWLFTMWGGQVRFTSPNLFAVGFIPTFTMGGVTGVML 360 PVAN LFS++TMLIAVPTGIKIFNWLFT+WGG ++F + NLFAVGFIPTF MGGVTGVML Sbjct: 307 PVANGLFSIATMLIAVPTGIKIFNWLFTLWGGSIKFNAANLFAVGFIPTFVMGGVTGVML 366 Query: 361 ASAPADFQFHDTYFVVAHFHYVIVGGLVSGLFAGLHYWWPKMFGRMLSETLGKWTFWTFI 420 A+APADFQ+HD+YFVVAHFHYVIVGGLV GLFAGLHYWWPKMFGRML+E L K TFWTF Sbjct: 367 AAAPADFQYHDSYFVVAHFHYVIVGGLVLGLFAGLHYWWPKMFGRMLNEGLAKLTFWTFF 426 Query: 421 IGFHLTFFVQHFLGLMGMQRRVFTYLPNQQFDLLNLISTIGAGLMGVGVLIFLTNIFLTS 480 IGFHLTFFVQHFLGLMGM RR++TYL F+ LNLISTIGA LMG+G + FL N+ +T+ Sbjct: 427 IGFHLTFFVQHFLGLMGMPRRIWTYLDGLGFNELNLISTIGAMLMGLGTIFFLLNVVITA 486 Query: 481 RKPADAPDDPWEDGRTLEWTISSPPPEYNFKQTPLVRGLDAFWKEKTSGHKTMTPAEPVG 540 KP +A +DPWEDGRTLEWTI SP PEYNFKQTPLVRG DA+WKEK GHK MTPAEP+G Sbjct: 487 FKPKNAANDPWEDGRTLEWTIPSPAPEYNFKQTPLVRGYDAYWKEKMDGHKEMTPAEPIG 546 Query: 541 PIHMPSATILPFLMSVGIFIAGLGFMFSRDDFGNAFMGFLFNNYLVTAIGLVITFGSMLL 600 IHMPS +ILP M++G+FI GLG M+S ++G + + ++V IGL+ITF M++ Sbjct: 547 SIHMPSPSILPLFMAIGLFITGLGLMYSHGEWGK--IAGIEAGFVVGGIGLIITFTCMII 604 Query: 601 RSLYDDHGWHIEPEELEGR 619 RSL DDHG+HIEPEEL+ + Sbjct: 605 RSLIDDHGFHIEPEELQDK 623 >C0Z581.1 C0Z581_BREBN Cytochrome c oxidase polypeptide I EC=1.9.3.1 Length = 614 Score = 892 bits (2305), Expect = 0.0, Method: Compositional matrix adjust. Identities = 441/617 (71%), Positives = 510/617 (82%), Gaps = 16/617 (2%) Query: 3 RHTGLMDWITTVDHKKIAILYLWAGGLFFGIGGLEAILIRIQLIKPMNTFLDAQTFNELI 62 +GL D++TTVDHKKIAILYL AGG+FF GGLEA+LIR+QL+ P + A+TFNELI Sbjct: 10 NRSGLWDYLTTVDHKKIAILYLIAGGIFFLAGGLEALLIRLQLMYPEIELVGAKTFNELI 69 Query: 63 TMHGTTMIFLGVMPVIFALMNAVIPLQIGARDVAFPFLNALGFWTFLFGGVLLNLSWIMG 122 TMHGTTMIFL VMP+IFALMNA++PLQIGARDVAFPF+NALGFW F FGGVLLN SW +G Sbjct: 70 TMHGTTMIFLAVMPIIFALMNAIVPLQIGARDVAFPFVNALGFWLFFFGGVLLNTSWFLG 129 Query: 123 GAPDAGWTSYTPLSTTQYSGTHGVDFYTIGLQIAGLGTLIGGINFLATIITMRAPGMSFM 182 GAPDAGWTSYT L+ QYSG GVDFY +GLQIAGLGTLIGGINFL TII MRAPGM+FM Sbjct: 130 GAPDAGWTSYTTLALNQYSG-RGVDFYVLGLQIAGLGTLIGGINFLVTIINMRAPGMTFM 188 Query: 183 RMPMFVWASFITSAIILFAFPAITVGLVLLTFDRILEANFFDTSAGGNSVLWQHIFWIFG 242 RMPMF W SFITS +ILFAFPAITVGLVLL FDR+ NFF+ AGGN V+W+H+FWIFG Sbjct: 189 RMPMFTWTSFITSGLILFAFPAITVGLVLLMFDRLFGGNFFNPDAGGNVVIWEHLFWIFG 248 Query: 243 HPEVYILILPAFGIISEVIPTFARKRLFGYSSMVFATILIAFLGFMVWAHHMFTTGLGPV 302 HPEVYILILPAFG+ISEV+ TF+RKRLFGYSSMVFAT LI FLGFMVWAHHMFTTGLG + Sbjct: 249 HPEVYILILPAFGVISEVVSTFSRKRLFGYSSMVFATALIGFLGFMVWAHHMFTTGLGAI 308 Query: 303 ANALFSVSTMLIAVPTGIKIFNWLFTMWGGQVRFTSPNLFAVGFIPTFTMGGVTGVMLAS 362 AN LF ++TMLIAVPTGIKIFNWL TMWGGQ+RF + NLFAVGFIPTFT+GG+TGVMLA Sbjct: 309 ANTLFGLATMLIAVPTGIKIFNWLLTMWGGQIRFPTANLFAVGFIPTFTIGGMTGVMLAV 368 Query: 363 APADFQFHDTYFVVAHFHYVIVGGLVSGLFAGLHYWWPKMFGRMLSETLGKWTFWTFIIG 422 PAD+Q+HD+YFVVAHFHYVIVGGLV GLF+GL+YWWPKMFG+ML+ET+GKW FWTF IG Sbjct: 369 PPADYQYHDSYFVVAHFHYVIVGGLVFGLFSGLYYWWPKMFGKMLNETIGKWNFWTFFIG 428 Query: 423 FHLTFFVQHFLGLMGMQRRVFTYLPNQQFDLLNLISTIGAGLMGVGVLIFLTNIFLTSRK 482 FHLTFF QHFLGLMGM RRVFTYL +Q D+ N ISTIGA M +G ++F+ N+ + ++ Sbjct: 429 FHLTFFPQHFLGLMGMPRRVFTYLKDQNLDMGNFISTIGAFGMTIGTILFVINVVVAAKS 488 Query: 483 PADAPDDPWEDGRTLEWTISSPPPEYNFKQTPLVRGLDAFWKEKTSGHKTMTPAEPVGPI 542 AP DPW DGR+LEW I SPPPEYNF QTPLVRGLDA W EK +G+K MTPAEP+G I Sbjct: 489 SKRAPADPW-DGRSLEWAIPSPPPEYNFVQTPLVRGLDALWVEKMAGNKGMTPAEPIGDI 547 Query: 543 HMPSATILPFLMSVGIFIAGLGFMFSRDDFGNAFMGFLFNNYLVTAIGLVITFGSMLLRS 602 HMPS + LPFLMS+G+F+AG GF+++NY+V IG++ T M RS Sbjct: 548 HMPSPSFLPFLMSLGLFVAGY--------------GFIYHNYVVVVIGILATLSCMFTRS 593 Query: 603 LYDDHGWHIEPEELEGR 619 + DD G+HI +ELE + Sbjct: 594 VKDDPGYHIHEDELEEK 610 >B7GGL9.1 B7GGL9_ANOFW Cytochrome caa3 oxidase (Subunit I) Length = 622 Score = 853 bits (2204), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/608 (67%), Positives = 493/608 (81%), Gaps = 11/608 (1%) Query: 9 DWITTVDHKKIAILYLWAGGLFFGIGGLEAILIRIQLIKPMNTFLDAQTFNELITMHGTT 68 D++TTVDHKKIAILYL AGG+FF +GGLEA++IRIQL P N F+ A +NE++TMHGTT Sbjct: 16 DYLTTVDHKKIAILYLIAGGIFFLLGGLEAMIIRIQLAVPNNDFISAGFYNEVLTMHGTT 75 Query: 69 MIFLGVMPVIFALMNAVIPLQIGARDVAFPFLNALGFWTFLFGGVLLNLSWIMGGAPDAG 128 MIFL MP++FA+MNAV+P+QIGARDVAFPFLNALGFW F FGGV LNLSW +GGAPDAG Sbjct: 76 MIFLAAMPLVFAMMNAVVPIQIGARDVAFPFLNALGFWLFFFGGVFLNLSWFLGGAPDAG 135 Query: 129 WTSYTPLSTTQYSGTHGVDFYTIGLQIAGLGTLIGGINFLATIITMRAPGMSFMRMPMFV 188 WTSY LS S THG+DFY +GLQI+G GTLIGGINFL TII MRAPGM++MRMPMF Sbjct: 136 WTSYASLSLA--SPTHGIDFYVLGLQISGFGTLIGGINFLVTIINMRAPGMTYMRMPMFT 193 Query: 189 WASFITSAIILFAFPAITVGLVLLTFDRILEANFFDTSAGGNSVLWQHIFWIFGHPEVYI 248 WA+F+TSA+ILFAFP +TVGL+ + DR+ NFFD + GGN+++W+H+FWIFGHPEVYI Sbjct: 194 WATFVTSALILFAFPPLTVGLIFMMMDRLFGGNFFDPALGGNTIIWEHLFWIFGHPEVYI 253 Query: 249 LILPAFGIISEVIPTFARKRLFGYSSMVFATILIAFLGFMVWAHHMFTTGLGPVANALFS 308 L+LPAFGI SE+ TF+RKRLFGYSSMVFAT+LI FLGFMVWAHHMFT G+GP+ANA+F+ Sbjct: 254 LVLPAFGIFSEIFATFSRKRLFGYSSMVFATVLIGFLGFMVWAHHMFTVGMGPIANAIFA 313 Query: 309 VSTMLIAVPTGIKIFNWLFTMWGGQVRFTSPNLFAVGFIPTFTMGGVTGVMLASAPADFQ 368 V+TM IAVPTGIKIFNWLFTMWGG +RFT+P ++AV FIP+F +GGVTGVM A+A AD+Q Sbjct: 314 VATMAIAVPTGIKIFNWLFTMWGGSIRFTTPMMYAVAFIPSFVIGGVTGVMNATAAADYQ 373 Query: 369 FHDTYFVVAHFHYVIVGGLVSGLFAGLHYWWPKMFGRMLSETLGKWTFWTFIIGFHLTFF 428 +HD+YFVVAHFHYVIVGG+V L AG HYWWPKMFG+ML E LGK TFW F GFHLTFF Sbjct: 374 YHDSYFVVAHFHYVIVGGVVFALLAGAHYWWPKMFGKMLDEKLGKVTFWLFFTGFHLTFF 433 Query: 429 VQHFLGLMGMQRRVFTYLPNQQFDLLNLISTIGAGLMGVGVLIFLTNIFLTSRKPADAPD 488 +QHFLGLMGM RRVFT+LP Q F+ N+ISTIGA M G ++ L N+ +T+ K + Sbjct: 434 IQHFLGLMGMPRRVFTFLPGQGFETGNMISTIGAFFMAAGTIVLLANVVITTVKGKRVGN 493 Query: 489 DPWEDGRTLEWTISSPPPEYNFKQTPLVRGLDAFWKEKTSGHKTMTPAEPVGPIHMPSAT 548 DPWEDGRTLEW +SSP PEYNF QTPLVRGLDA+W EK G K +TPAEP+G IHMP+ + Sbjct: 494 DPWEDGRTLEWAVSSPAPEYNFAQTPLVRGLDAYWIEKMEGKKGLTPAEPLGDIHMPNPS 553 Query: 549 ILPFLMSVGIFIAGLGFMFSRDDFGNAFMGFLFNNYLVTAIGLVITFGSMLLRSLYDDHG 608 LPF++S G+F+A GF+F D +G +GL+IT G+M RS+ DDHG Sbjct: 554 FLPFVISFGLFVAAFGFLFHNDHAWGTPVG---------VVGLLITLGAMFFRSIIDDHG 604 Query: 609 WHIEPEEL 616 +HI EE+ Sbjct: 605 FHIHKEEV 612 >Q2B4U9.1 Q2B4U9_9BACI Cytochrome c oxidase subunit I Length = 605 Score = 852 bits (2202), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/603 (69%), Positives = 492/603 (81%), Gaps = 9/603 (1%) Query: 14 VDHKKIAILYLWAGGLFFGIGGLEAILIRIQLIKPMNTFLDAQTFNELITMHGTTMIFLG 73 +DHKKIAILYL AGG FF +GGLEA+ IRIQL P N FL A +NE++TMHGTTMIFL Sbjct: 1 MDHKKIAILYLIAGGFFFIVGGLEAMFIRIQLAVPNNDFLSAGLYNEILTMHGTTMIFLA 60 Query: 74 VMPVIFALMNAVIPLQIGARDVAFPFLNALGFWTFLFGGVLLNLSWIMGGAPDAGWTSYT 133 MP+IFA MNAV+PLQIGARDVAFPFLN+LGFW F FGG+ LNLSW +GGAPDAGWTSY Sbjct: 61 AMPLIFAFMNAVVPLQIGARDVAFPFLNSLGFWLFFFGGIFLNLSWFLGGAPDAGWTSYA 120 Query: 134 PLSTTQYSGTHGVDFYTIGLQIAGLGTLIGGINFLATIITMRAPGMSFMRMPMFVWASFI 193 LS S HG+DFY +GLQI+G GTLIGGINFL TI+ MRAPGM++MRMP+F W++F+ Sbjct: 121 SLSMA--SEGHGIDFYALGLQISGAGTLIGGINFLVTIVNMRAPGMTYMRMPLFTWSTFV 178 Query: 194 TSAIILFAFPAITVGLVLLTFDRILEANFFDTSAGGNSVLWQHIFWIFGHPEVYILILPA 253 SA+ILFAFPA+TVG+ LL FDR+ +NFFD + GGN+V+W+H+FWIFGHPEVYILILPA Sbjct: 179 VSALILFAFPALTVGIFLLIFDRMFGSNFFDVANGGNTVIWEHLFWIFGHPEVYILILPA 238 Query: 254 FGIISEVIPTFARKRLFGYSSMVFATILIAFLGFMVWAHHMFTTGLGPVANALFSVSTML 313 FGI SE+ TF+RKRLFGYSSMVFAT+LI FLGFMVWAHHMFTTGLGP+ANA+F+V+TM Sbjct: 239 FGIFSEIFATFSRKRLFGYSSMVFATVLIGFLGFMVWAHHMFTTGLGPIANAIFAVATMA 298 Query: 314 IAVPTGIKIFNWLFTMWGGQVRFTSPNLFAVGFIPTFTMGGVTGVMLASAPADFQFHDTY 373 IAVPTGIKIFNWLFTMWGG +RFT+P L+AV FIP+F GGVTGVM A+APAD+QFHD+Y Sbjct: 299 IAVPTGIKIFNWLFTMWGGSIRFTTPMLYAVAFIPSFVAGGVTGVMNAAAPADYQFHDSY 358 Query: 374 FVVAHFHYVIVGGLVSGLFAGLHYWWPKMFGRMLSETLGKWTFWTFIIGFHLTFFVQHFL 433 FVVAHFHYVIVGG+V GL AGLH++WPKMFG MLSE LGK TFW F+IGFHLTFF+QHFL Sbjct: 359 FVVAHFHYVIVGGVVLGLLAGLHFYWPKMFGTMLSEKLGKITFWLFLIGFHLTFFIQHFL 418 Query: 434 GLMGMQRRVFTYLPNQQFDLLNLISTIGAGLMGVGVLIFLTNIFLTSRKPADAPDDPWED 493 GLMGM RRVFT+LP Q + N+ISTIGA M V VLI L NI +TS K +DPW D Sbjct: 419 GLMGMPRRVFTFLPGQGLETGNMISTIGAFFMAVAVLILLINIIVTSVKNVKVGNDPWGD 478 Query: 494 GRTLEWTISSPPPEYNFKQTPLVRGLDAFWKEKTSGHKTMTPAEPVGPIHMPSATILPFL 553 GRTLEW I SPPP YNFKQTPLVRGLDA+W EK G +TPAEP+G IHMP+++ +PF+ Sbjct: 479 GRTLEWAIPSPPPFYNFKQTPLVRGLDAYWLEKMEGKNALTPAEPIGDIHMPNSSFIPFM 538 Query: 554 MSVGIFIAGLGFMFSRDDFGNAFMGFLFNNYLVTAIGLVITFGSMLLRSLYDDHGWHIEP 613 +S G+F+A G M+ DD GN + V +G+ IT GSM LRS+ DDHG+HI Sbjct: 539 ISFGLFVAAFGAMYHGDD-GNNW------GIPVLILGMAITLGSMFLRSVKDDHGFHIHK 591 Query: 614 EEL 616 E+L Sbjct: 592 EDL 594 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.330 0.145 0.473 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,964,643,869 Number of extensions: 178633734 Number of successful extensions: 799521 Number of sequences better than 1.0e-05: 90234 Number of HSP's gapped: 647620 Number of HSP's successfully gapped: 90507 Length of query: 619 Length of database: 3,060,696,203 Length adjustment: 142 Effective length of query: 477 Effective length of database: 1,722,912,073 Effective search space: 821829058821 Effective search space used: 821829058821 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 134 (56.2 bits)