BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0225.0004.p
         (47 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K4U2.1 B3K4U2_9BACI Putative uncharacterized protein                 87   5e-16
B1D9X0.1 B1D9X0_9BACL Putative uncharacterized protein                 79   1e-13

>B3K4U2.1 B3K4U2_9BACI Putative uncharacterized protein
          Length = 62

 Score = 87.0 bits (214), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 41/47 (87%), Positives = 44/47 (93%)

Query: 1  MTRIFRPKDPKKFVKEYVRKYRITGGYEEELTMVVEHELVRMNSSVS 47
          MTRIFRPKDPKKFVKEYVRKY I GGYEEELT+VVEHEL ++NSSVS
Sbjct: 16 MTRIFRPKDPKKFVKEYVRKYHIMGGYEEELTLVVEHELGKLNSSVS 62


>B1D9X0.1 B1D9X0_9BACL Putative uncharacterized protein
          Length = 62

 Score = 79.0 bits (193), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/47 (72%), Positives = 45/47 (95%)

Query: 1  MTRIFRPKDPKKFVKEYVRKYRITGGYEEELTMVVEHELVRMNSSVS 47
          +TRIF+PKDP+KFVK+Y+RKYRITGGYE+ELT++VE E+ ++NSSVS
Sbjct: 16 LTRIFQPKDPRKFVKDYIRKYRITGGYEDELTILVEDEMGKINSSVS 62


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.319    0.135    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 262,533,515
Number of extensions: 6091413
Number of successful extensions: 15508
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 15508
Number of HSP's successfully gapped: 2
Length of query: 47
Length of database: 3,060,696,203
Length adjustment: 20
Effective length of query: 27
Effective length of database: 2,872,275,903
Effective search space: 77551449381
Effective search space used: 77551449381
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)