BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0225.0001.p (241 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K4V4.1 B3K4V4_9BACI ABC transporter related 267 8e-70 B1D4K6.1 B1D4K6_9BACL ABC transporter related 244 5e-63 C1P7R1.1 C1P7R1_BACCO ABC transporter related 197 4e-49 Q2B186.1 Q2B186_9BACI ABC transporter (ATP-binding protein) (Na+... 195 3e-48 C5D6L0.1 C5D6L0_9BACI ABC transporter related 195 3e-48 >B3K4V4.1 B3K4V4_9BACI ABC transporter related Length = 297 Score = 267 bits (682), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 132/191 (69%), Positives = 154/191 (80%), Gaps = 11/191 (5%) Query: 4 LKLEQVMKQYGDKTAVNGISLKVEPGEIYGLLGANGAGKTTTMRMVLGLIYPDGGKILYN 63 ++L+ V+K Y DKTAVN ISL+VE GEIYGLLGANGAGKTTTMRMVLGLIYPD G ILYN Sbjct: 1 MQLDNVVKIYADKTAVNRISLQVEEGEIYGLLGANGAGKTTTMRMVLGLIYPDDGTILYN 60 Query: 64 GKPFSDELQHMMGYLPEERGLYPKVKVSDQIIYLARLRGMSAGDAEKSLRFWLERFDVPE 123 GKP++ EL+H+MGYLPEERGLYPKVKVS+QI YLA+LRGMSA DA+KSL++WLERF+VP+ Sbjct: 61 GKPYNKELRHIMGYLPEERGLYPKVKVSEQISYLAQLRGMSAKDADKSLKYWLERFEVPD 120 Query: 124 YYNKKIEELSKGNQQKMGFIAAVVHKPQILILQHAVD--RPVAAD---------DDGGAP 172 YY+KKIEELSKGNQQKMGFIAAVVH PQILIL A PV + D G Sbjct: 121 YYDKKIEELSKGNQQKMGFIAAVVHDPQILILDEAFSGLDPVNVELLKSTVKELRDKGTS 180 Query: 173 VLAPGQRVQHL 183 +L R++H+ Sbjct: 181 ILFSTHRMEHV 191 >B1D4K6.1 B1D4K6_9BACL ABC transporter related Length = 301 Score = 244 bits (623), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 119/194 (61%), Positives = 152/194 (78%), Gaps = 11/194 (5%) Query: 1 MEALKLEQVMKQYGDKTAVNGISLKVEPGEIYGLLGANGAGKTTTMRMVLGLIYPDGGKI 60 M+ L +++V KQYG+KTAVNGIS +VE GEIYGLLGANGAGKTTTMRMVLGLIYPD G+I Sbjct: 1 MKPLVVDRVHKQYGEKTAVNGISFEVEQGEIYGLLGANGAGKTTTMRMVLGLIYPDDGRI 60 Query: 61 LYNGKPFSDELQHMMGYLPEERGLYPKVKVSDQIIYLARLRGMSAGDAEKSLRFWLERFD 120 LYNG+P++ E M+GYLPEERGLYP+VKVSDQ+IYLA+LRGM+ DA+ +L+ WL+RF+ Sbjct: 61 LYNGQPYTKEQLSMLGYLPEERGLYPRVKVSDQLIYLAQLRGMNKKDADANLKRWLDRFE 120 Query: 121 VPEYYNKKIEELSKGNQQKMGFIAAVVHKPQILILQHAVD--RPVAAD---------DDG 169 VPEYY K++EELSKGNQQK+ FIA+V+H+P+I+IL A PV + D Sbjct: 121 VPEYYGKRVEELSKGNQQKIQFIASVIHRPRIVILDEAFSGLDPVNVELLKSTVKELRDS 180 Query: 170 GAPVLAPGQRVQHL 183 G +L R++H+ Sbjct: 181 GTSMLFSTHRMEHV 194 >C1P7R1.1 C1P7R1_BACCO ABC transporter related Length = 299 Score = 197 bits (502), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 100/192 (52%), Positives = 131/192 (68%), Gaps = 11/192 (5%) Query: 3 ALKLEQVMKQYGDKTAVNGISLKVEPGEIYGLLGANGAGKTTTMRMVLGLIYPDGGKILY 62 +L LE V K++G TAVN +SL + E++G LGANGAGKTTT RM+LGL+ P+ G I + Sbjct: 2 SLVLEHVTKKFGAFTAVNDLSLMIPEKELFGFLGANGAGKTTTFRMILGLLKPNEGNISW 61 Query: 63 NGKPFSDELQHMMGYLPEERGLYPKVKVSDQIIYLARLRGMSAGDAEKSLRFWLERFDVP 122 NG+ L +GYLPEERGLYPK+KV DQ++YLARLRGM DA K L++WL RF V Sbjct: 62 NGRKMDYTLSPEIGYLPEERGLYPKLKVKDQLVYLARLRGMGKQDAVKELKYWLGRFHVE 121 Query: 123 EYYNKKIEELSKGNQQKMGFIAAVVHKPQILILQ-----------HAVDRPVAADDDGGA 171 EY +K++EELSKGNQQK+ FIAAV+HKP++LIL + VA D GA Sbjct: 122 EYLDKRVEELSKGNQQKIQFIAAVLHKPKLLILDEPFSGLDPVNVETLKTAVAELRDQGA 181 Query: 172 PVLAPGQRVQHL 183 ++ R++H+ Sbjct: 182 TIVFSSHRMEHV 193 >Q2B186.1 Q2B186_9BACI ABC transporter (ATP-binding protein) (Na+ exclusion) Length = 299 Score = 195 bits (496), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 95/165 (57%), Positives = 120/165 (72%), Gaps = 4/165 (2%) Query: 3 ALKLEQVMKQYGDKTAVNGISLKVEPGEIYGLLGANGAGKTTTMRMVLGLIYPDGGKILY 62 L+LE V K++G TAV+ +SL + E++G LGANGAGKTTT RMVLGL+ P G+I + Sbjct: 2 VLELEHVTKRFGKFTAVDDLSLTIPEKEMFGFLGANGAGKTTTFRMVLGLLEPTSGRISW 61 Query: 63 NGKPFSDELQHMMGYLPEERGLYPKVKVSDQIIYLARLRGMSAGDAEKSLRFWLERFDVP 122 +G ++GYLPEERGLYPK+KV DQ++YLARLRGM D K L +WL RF VP Sbjct: 62 DGNTIDYSTSPIIGYLPEERGLYPKLKVRDQVVYLARLRGMKKPDILKELDYWLNRFKVP 121 Query: 123 EYYNKKIEELSKGNQQKMGFIAAVVHKPQILILQHAVDRPVAADD 167 EY NKK+EELSKGNQQK+ FIA+V+HKP++LIL D P + D Sbjct: 122 EYANKKVEELSKGNQQKIQFIASVIHKPKLLIL----DEPFSGLD 162 >C5D6L0.1 C5D6L0_9BACI ABC transporter related Length = 299 Score = 195 bits (495), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 96/196 (48%), Positives = 129/196 (65%), Gaps = 19/196 (9%) Query: 3 ALKLEQVMKQYGDKTAVNGISLKVEPGEIYGLLGANGAGKTTTMRMVLGLIYPDGGKILY 62 +L+L V K++G TAVN ++L + G ++G LGANGAGKTTT RM+LGL+ P G I + Sbjct: 2 SLQLAHVTKRFGTVTAVNDVTLTIPEGNLFGFLGANGAGKTTTFRMILGLLEPTEGTITW 61 Query: 63 NGKPFSDELQHMMGYLPEERGLYPKVKVSDQIIYLARLRGMSAGDAEKSLRFWLERFDVP 122 NG+ H++GYLPEERGLYPK+KV DQ+IYL RLRGM K + WLERF+VP Sbjct: 62 NGEKIDYSKSHLIGYLPEERGLYPKLKVKDQLIYLGRLRGMDKAAIIKEMEAWLERFNVP 121 Query: 123 EYYNKKIEELSKGNQQKMGFIAAVVHKPQILILQHAVDRPVAADD--------------- 167 EY +K++EELSKGNQQK+ FIAAV+HKP++LIL D P + D Sbjct: 122 EYADKRVEELSKGNQQKIQFIAAVLHKPKLLIL----DEPFSGLDPVNVELLKEAVIDLK 177 Query: 168 DGGAPVLAPGQRVQHL 183 + G ++ R++H+ Sbjct: 178 NNGTTIVFSSHRMEHV 193 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.139 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,433,621,210 Number of extensions: 61765453 Number of successful extensions: 352869 Number of sequences better than 1.0e-05: 52837 Number of HSP's gapped: 331560 Number of HSP's successfully gapped: 54142 Length of query: 241 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 109 Effective length of database: 1,817,122,223 Effective search space: 198066322307 Effective search space used: 198066322307 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)