BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0217.0019.p
         (179 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q5WC02.1 Q5WC02_BACSK Putative uncharacterized protein                 79   2e-13
C0Z7R1.1 C0Z7R1_BREBN Conserved hypothetical membrane protein          72   2e-11

>Q5WC02.1 Q5WC02_BACSK Putative uncharacterized protein
          Length = 177

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 77/174 (44%)

Query: 1   VIHWLNLHIDQVSLLWLLPILFMFHDFEEILTVESWGIKYGPKVEAALPPGKWNPYRSML 60
           +I  LN  +   SL+WL    FM HDFEEI+ VE W  K    V   +P      +R   
Sbjct: 1   MIEALNQSVSISSLIWLFLAFFMIHDFEEIIFVEGWVKKRYESVYQRIPSFYRPIFRIFN 60

Query: 61  RMTTRNFAADVLXXXXXXXXXXXXXXXXXXYWXXXXXXXXXXXXXXXXXGQSIILKIYTP 120
            MT   FA  V                   +                  GQ+++L++YTP
Sbjct: 61  GMTGSQFAFAVFIEFIVFIPVTYLAAEQQMFTWFIGFNVIAFLHVFTHAGQALLLRMYTP 120

Query: 121 GVVTAVLIALPYSSYAFYRLLKENTVSWVDVCWSLLLMALLAPAIVWGLVKSRQ 174
           GV+TA+++ LPYS Y FYRL  E  +   D+  S+     + P + +G + +++
Sbjct: 121 GVITAIIVTLPYSLYLFYRLEAEYNIQVNDLIASIPYGLTIIPIVAFGHLLAKK 174


>C0Z7R1.1 C0Z7R1_BREBN Conserved hypothetical membrane protein
          Length = 178

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 70/159 (44%), Gaps = 5/159 (3%)

Query: 14  LLWLLPILFMFHDFEEILTVESWGIKYGPKVEAALPPGKWNPYRSMLRMTTRNFAADV-- 71
           L+WL  ++FMFHDFEEI+ VE W       +  A+P          L M T  FA  V  
Sbjct: 7   LIWLFLVVFMFHDFEEIVMVEGWVRAKKDIIRRAVPKLLMKMLEPSLSMNTAQFAVAVSC 66

Query: 72  -LXXXXXXXXXXXXXXXXXXYW-XXXXXXXXXXXXXXXXXGQSIILKIYTPGVVTAVLIA 129
                               Y                   G +++L+ YTPGVVTAV+  
Sbjct: 67  IFAVLSVAVILTVTTLSSGTYLPFFLVCLHVMFLHVFIHVGHTVVLRTYTPGVVTAVVFV 126

Query: 130 LPYSSYAFYRLLKENTVSWVDVCWSLLLMALLAPAIVWG 168
           LPYS Y + RLL+   V+W  + WS L  +LL   +++G
Sbjct: 127 LPYSLYTYDRLLEAGLVTW-PLLWSTLPYSLLIIPVLYG 164


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.326    0.140    0.465 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 871,565,810
Number of extensions: 26900312
Number of successful extensions: 94725
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 94728
Number of HSP's successfully gapped: 2
Length of query: 179
Length of database: 3,060,696,203
Length adjustment: 127
Effective length of query: 52
Effective length of database: 1,864,227,298
Effective search space: 96939819496
Effective search space used: 96939819496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 126 (53.1 bits)