BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0217.0018.p (358 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value P24136.2 OPPD_BACSU Oligopeptide transport ATP-binding protein oppD 531 e-149 A7Z3D4.1 A7Z3D4_BACA2 OppD 524 e-147 B4AFA6.1 B4AFA6_BACPU Oligopeptide transport ATP-binding protein... 519 e-145 Q65LC1.1 Q65LC1_BACLD OppD 516 e-144 Q2B8Z0.1 Q2B8Z0_9BACI Oligopeptide ABC transporter (ATP-binding ... 476 e-132 >P24136.2 OPPD_BACSU Oligopeptide transport ATP-binding protein oppD Length = 358 Score = 531 bits (1368), Expect = e-149, Method: Compositional matrix adjust. Identities = 262/351 (74%), Positives = 293/351 (83%), Gaps = 3/351 (0%) Query: 3 RLLEVKDLAISFRTRGGEVQAIRGVSFHVNKGETLAIVGESGSGKSVTSQAVMKLVPQPM 62 RLLEVKDLAISF+T GGEVQAIRGV+FH++KGETLAIVGESGSGKSVTSQA+MKL+P P Sbjct: 6 RLLEVKDLAISFKTYGGEVQAIRGVNFHLDKGETLAIVGESGSGKSVTSQAIMKLIPMPP 65 Query: 63 GEYKRGQILFEGQDLIGKNEKQMQKIRGKEIGMIFQDPMTSLNPMMKVGKQITEVLFKHE 122 G +KRG+ILFEG+DL+ +EK+MQ +RGKEIGMIFQDPMTSLNP MKVGKQITEVLFKHE Sbjct: 66 GYFKRGEILFEGKDLVPLSEKEMQNVRGKEIGMIFQDPMTSLNPTMKVGKQITEVLFKHE 125 Query: 123 KISKDAAYKRGIELLNLVGIPSPERRFQQYPHEFSGGMRQRVVIAMALAANPKLLIADEP 182 KISK+AA KR +ELL LVGIP PE+R Q+PHEFSGGMRQRVVIAMALAANPKLLIADEP Sbjct: 126 KISKEAAKKRAVELLELVGIPMPEKRVNQFPHEFSGGMRQRVVIAMALAANPKLLIADEP 185 Query: 183 TTALDVTIQAQILDLMKDIQKKIDTAIIFITHDLGXXXXXXXXXXXXXXGQIVEMGTAEE 242 TTALDVTIQAQIL+LMKD+QKKIDT+IIFITHDLG GQIVE GT +E Sbjct: 186 TTALDVTIQAQILELMKDLQKKIDTSIIFITHDLGVVANVADRVAVMYAGQIVETGTVDE 245 Query: 243 IFYDPRHPYTWGLLASMPSLESKG-SLLTAIPGTPPDLIKPPKGDAFALRSTYAMQIDME 301 IFYDPRHPYTWGLLASMP+LES G LTAIPGTPPDL PPKGDAFALRS+YAM+ID E Sbjct: 246 IFYDPRHPYTWGLLASMPTLESSGEEELTAIPGTPPDLTNPPKGDAFALRSSYAMKIDFE 305 Query: 302 KEPPMYKVSDTHXXXXKSWLMHPLXXXXXXXXXXXXRHRVLSNAYAEPVLV 352 +EPPM+KVSDTH KSWL+HP + R L+N + +PVLV Sbjct: 306 QEPPMFKVSDTH--YVKSWLLHPDAPKVEPPEAVKAKMRKLANTFEKPVLV 354 >A7Z3D4.1 A7Z3D4_BACA2 OppD Length = 358 Score = 524 bits (1350), Expect = e-147, Method: Compositional matrix adjust. Identities = 261/353 (73%), Positives = 291/353 (82%), Gaps = 3/353 (0%) Query: 1 MERLLEVKDLAISFRTRGGEVQAIRGVSFHVNKGETLAIVGESGSGKSVTSQAVMKLVPQ 60 M RLLEVKDLAISF+T GGEVQAIRGV+FH+NKGETLAIVGESGSGKSVTSQA+MKL+P Sbjct: 1 MTRLLEVKDLAISFKTYGGEVQAIRGVNFHLNKGETLAIVGESGSGKSVTSQAIMKLIPM 60 Query: 61 PMGEYKRGQILFEGQDLIGKNEKQMQKIRGKEIGMIFQDPMTSLNPMMKVGKQITEVLFK 120 P G +KRGQILF+G+D++ +EK+MQ IRGK+IGMIFQDPMTSLNP M+VGKQITEVLFK Sbjct: 61 PPGYFKRGQILFDGRDIVPMSEKEMQAIRGKDIGMIFQDPMTSLNPTMRVGKQITEVLFK 120 Query: 121 HEKISKDAAYKRGIELLNLVGIPSPERRFQQYPHEFSGGMRQRVVIAMALAANPKLLIAD 180 HEKIS +AA KR IELL+LVGIP PE+R Q+PHEFSGGMRQRVVIAMALAANPKLLIAD Sbjct: 121 HEKISSEAAKKRAIELLDLVGIPMPEKRIGQFPHEFSGGMRQRVVIAMALAANPKLLIAD 180 Query: 181 EPTTALDVTIQAQILDLMKDIQKKIDTAIIFITHDLGXXXXXXXXXXXXXXGQIVEMGTA 240 EPTTALDVTIQAQIL+LMKD+QKKIDT+IIFITHDLG GQ+VE GT Sbjct: 181 EPTTALDVTIQAQILELMKDLQKKIDTSIIFITHDLGVVANVADRVAVMYAGQVVESGTV 240 Query: 241 EEIFYDPRHPYTWGLLASMPSLESKG-SLLTAIPGTPPDLIKPPKGDAFALRSTYAMQID 299 +EIFYDPRHPYTWGLLASMPSL+S LTAIPGTPPDL PPKGDAFALRS+YAM+ID Sbjct: 241 DEIFYDPRHPYTWGLLASMPSLDSTDQEKLTAIPGTPPDLTNPPKGDAFALRSSYAMKID 300 Query: 300 MEKEPPMYKVSDTHXXXXKSWLMHPLXXXXXXXXXXXXRHRVLSNAYAEPVLV 352 E+EPPMYKVSDTH KSWL+HP + R L N Y PVL+ Sbjct: 301 FEQEPPMYKVSDTH--FVKSWLLHPDAPKVEPPEAVKAKIRQLPNTYQHPVLM 351 >B4AFA6.1 B4AFA6_BACPU Oligopeptide transport ATP-binding protein OppD Length = 359 Score = 519 bits (1337), Expect = e-145, Method: Compositional matrix adjust. Identities = 257/355 (72%), Positives = 291/355 (81%), Gaps = 5/355 (1%) Query: 2 ERLLEVKDLAISFRTRGGEVQAIRGVSFHVNKGETLAIVGESGSGKSVTSQAVMKLVPQP 61 ER+LEVKDLAISF+T GGEVQAIRGV+FH+NKGETLAIVGESGSGKSVTSQA+M+L+P P Sbjct: 4 ERILEVKDLAISFKTYGGEVQAIRGVNFHLNKGETLAIVGESGSGKSVTSQAIMRLIPMP 63 Query: 62 MGEYKRGQILFEGQDLIGKNEKQMQKIRGKEIGMIFQDPMTSLNPMMKVGKQITEVLFKH 121 G +KRGQILF+GQD++ K EKQMQ IRGK+I MIFQDPMTSLNP MKVGKQITEVLFKH Sbjct: 64 PGYFKRGQILFDGQDIVKKTEKQMQNIRGKDISMIFQDPMTSLNPTMKVGKQITEVLFKH 123 Query: 122 EKISKDAAYKRGIELLNLVGIPSPERRFQQYPHEFSGGMRQRVVIAMALAANPKLLIADE 181 E+ISK+AA KR IELL LVGI PE+R +QYPHEFSGGMRQRVVIAMALAA+PKLLIADE Sbjct: 124 EQISKEAAEKRAIELLELVGIAMPEKRIKQYPHEFSGGMRQRVVIAMALAADPKLLIADE 183 Query: 182 PTTALDVTIQAQILDLMKDIQKKIDTAIIFITHDLGXXXXXXXXXXXXXXGQIVEMGTAE 241 PTTALDVTIQAQIL+LMK+IQ+K++T+IIFITHDLG GQIVE GT + Sbjct: 184 PTTALDVTIQAQILELMKEIQQKVETSIIFITHDLGVVANVADRVAVMYAGQIVETGTVD 243 Query: 242 EIFYDPRHPYTWGLLASMPSLESKGSL---LTAIPGTPPDLIKPPKGDAFALRSTYAMQI 298 EIFY+P+HPYTWGLLASMPSL++ G LTAIPGTPPDL PPKGDAFALRS YAM+I Sbjct: 244 EIFYNPQHPYTWGLLASMPSLDTDGGAEGKLTAIPGTPPDLTNPPKGDAFALRSDYAMKI 303 Query: 299 DMEKEPPMYKVSDTHXXXXKSWLMHPLXXXXXXXXXXXXRHRVLSNAYAEPVLVN 353 D E+EPPM+KVSDTH KSWL+HP R R L +Y +PVLV Sbjct: 304 DFEQEPPMFKVSDTH--YVKSWLLHPNAPKVEPPAAVKARMRELEGSYEKPVLVK 356 >Q65LC1.1 Q65LC1_BACLD OppD Length = 355 Score = 516 bits (1328), Expect = e-144, Method: Compositional matrix adjust. Identities = 255/353 (72%), Positives = 288/353 (81%), Gaps = 3/353 (0%) Query: 1 MERLLEVKDLAISFRTRGGEVQAIRGVSFHVNKGETLAIVGESGSGKSVTSQAVMKLVPQ 60 M+ LLEVKDLAISF+T GEVQAIRGV+FHV+KGETLAIVGESGSGKSVTSQA+MKL+P Sbjct: 1 MKHLLEVKDLAISFKTYAGEVQAIRGVNFHVDKGETLAIVGESGSGKSVTSQAIMKLIPM 60 Query: 61 PMGEYKRGQILFEGQDLIGKNEKQMQKIRGKEIGMIFQDPMTSLNPMMKVGKQITEVLFK 120 P G +K GQILF+GQDL+ K EK+MQ IRGKEIGMIFQDPMTSLNP MKVG+QITEVLFK Sbjct: 61 PPGYFKNGQILFDGQDLVPKTEKEMQSIRGKEIGMIFQDPMTSLNPTMKVGRQITEVLFK 120 Query: 121 HEKISKDAAYKRGIELLNLVGIPSPERRFQQYPHEFSGGMRQRVVIAMALAANPKLLIAD 180 HEKISK+ A KR +ELL+LVGIP PERR QYPHEFSGGMRQRVVIAMALAANPKLLIAD Sbjct: 121 HEKISKEEANKRAVELLSLVGIPMPERRVNQYPHEFSGGMRQRVVIAMALAANPKLLIAD 180 Query: 181 EPTTALDVTIQAQILDLMKDIQKKIDTAIIFITHDLGXXXXXXXXXXXXXXGQIVEMGTA 240 EPTTALDVTIQAQIL+LMKD+QKKI+T+IIFITHDLG GQIVE+GT Sbjct: 181 EPTTALDVTIQAQILELMKDLQKKIETSIIFITHDLGVVANVADRVAVMYAGQIVEIGTV 240 Query: 241 EEIFYDPRHPYTWGLLASMPSLESKGS-LLTAIPGTPPDLIKPPKGDAFALRSTYAMQID 299 +EIFY+P+HPYTWGLLASMPSL++ G L AIPG+PPDL PPKGDAFALRS YAM+ID Sbjct: 241 DEIFYNPKHPYTWGLLASMPSLDNDGDEELMAIPGSPPDLTNPPKGDAFALRSPYAMKID 300 Query: 300 MEKEPPMYKVSDTHXXXXKSWLMHPLXXXXXXXXXXXXRHRVLSNAYAEPVLV 352 E+EPPM+K+SDTH KSWL+HP + + N Y +PV V Sbjct: 301 FEQEPPMFKISDTH--YVKSWLLHPDAPKVEPPAAVKSKMKEFKNQYEKPVQV 351 >Q2B8Z0.1 Q2B8Z0_9BACI Oligopeptide ABC transporter (ATP-binding protein) Length = 355 Score = 476 bits (1226), Expect = e-132, Method: Compositional matrix adjust. Identities = 234/353 (66%), Positives = 276/353 (78%), Gaps = 3/353 (0%) Query: 1 MERLLEVKDLAISFRTRGGEVQAIRGVSFHVNKGETLAIVGESGSGKSVTSQAVMKLVPQ 60 ME+LLEVKDL +SF+T GGEVQA+RGVSF ++KGETLAIVGESGSGKSVTSQ +MKL+P Sbjct: 1 MEKLLEVKDLRVSFQTYGGEVQAVRGVSFDLHKGETLAIVGESGSGKSVTSQTIMKLIPM 60 Query: 61 PMGEYKRGQILFEGQDLIGKNEKQMQKIRGKEIGMIFQDPMTSLNPMMKVGKQITEVLFK 120 P G GQIL +G D++ K+EK+M+KIRGKEI MIFQDPMTSLNP M++G+QI EVL K Sbjct: 61 PPGRIAGGQILLDGDDIVPKSEKEMEKIRGKEISMIFQDPMTSLNPTMRIGRQIMEVLIK 120 Query: 121 HEKISKDAAYKRGIELLNLVGIPSPERRFQQYPHEFSGGMRQRVVIAMALAANPKLLIAD 180 H+ +S AA R ELL LVGIP PE+R QYPHEFSGGMRQR +IA+ALAA+PKLLIAD Sbjct: 121 HQNMSSSAAKDRATELLRLVGIPMPEKRVNQYPHEFSGGMRQRAMIAIALAASPKLLIAD 180 Query: 181 EPTTALDVTIQAQILDLMKDIQKKIDTAIIFITHDLGXXXXXXXXXXXXXXGQIVEMGTA 240 EPTTALDVTIQAQILDLMKD+Q K+DT+IIFITHDLG GQIVEMGT Sbjct: 181 EPTTALDVTIQAQILDLMKDLQSKMDTSIIFITHDLGVVANVADRVAVMYAGQIVEMGTV 240 Query: 241 EEIFYDPRHPYTWGLLASMPSLESKG-SLLTAIPGTPPDLIKPPKGDAFALRSTYAMQID 299 +EIFYDPRHPYTWGLLASMPSL++ G + L AIPGTPPDL PP GDAFA R+ +A+ ID Sbjct: 241 DEIFYDPRHPYTWGLLASMPSLDNDGKTELAAIPGTPPDLTNPPVGDAFAARNQFALAID 300 Query: 300 MEKEPPMYKVSDTHXXXXKSWLMHPLXXXXXXXXXXXXRHRVLSNAYAEPVLV 352 E+EPPMY++S+TH K+WL+HP R R LS+ + +PVLV Sbjct: 301 FEEEPPMYQISETH--FAKTWLLHPDAPEVEPPEAVKRRIRKLSSTFDKPVLV 351 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.135 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,927,335,319 Number of extensions: 74310166 Number of successful extensions: 478124 Number of sequences better than 1.0e-05: 69660 Number of HSP's gapped: 395864 Number of HSP's successfully gapped: 73330 Length of query: 358 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 221 Effective length of database: 1,770,017,148 Effective search space: 391173789708 Effective search space used: 391173789708 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)