BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0217.0017.p
         (131 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K474.1 B3K474_9BACI Glycoside hydrolase family 43                   182   1e-44
Q65D31.1 Q65D31_BACLD YxiA                                            178   1e-43
A7ZAE2.1 A7ZAE2_BACA2 YxiA                                            173   3e-42
B3FRL6.1 B3FRL6_BACSU Endo-alpha-1,5-L-arabinanase EC=3.2.1.99        168   2e-40
P42293.2 YXIA_BACSU Uncharacterized protein yxiA                      168   2e-40

>B3K474.1 B3K474_9BACI Glycoside hydrolase family 43
          Length = 801

 Score =  182 bits (461), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 85/106 (80%), Positives = 94/106 (88%)

Query: 1   VHDPSVIKVDEMYYVFGSHLASAKSKDLMSWTQLSSGVDDGNVLIPNVTEELSETLRWAQ 60
           VHDPSVIK  + YYVFGSHLA+AKSKDLMSW  ++SGV  GN LIPNVTEEL ETL WAQ
Sbjct: 58  VHDPSVIKTGDTYYVFGSHLAAAKSKDLMSWDMVASGVATGNPLIPNVTEELRETLEWAQ 117

Query: 61  SDTLWAPDVIQLSDGKFYMYYDACRGDSPLSAMGIAVSDKIEGPYK 106
           SDTLWA DVIQL+DGKFYMYY+AC+GDSP SAMGIAV+D+IEGPYK
Sbjct: 118 SDTLWAADVIQLADGKFYMYYNACKGDSPRSAMGIAVADQIEGPYK 163


>Q65D31.1 Q65D31_BACLD YxiA
          Length = 475

 Score =  178 bits (452), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 82/106 (77%), Positives = 91/106 (85%)

Query: 1   VHDPSVIKVDEMYYVFGSHLASAKSKDLMSWTQLSSGVDDGNVLIPNVTEELSETLRWAQ 60
           VHDPS+IK +  YYVFGSHLASAKS DLM+WTQ+SS V DGN LIPNV EEL ET  WA+
Sbjct: 40  VHDPSIIKANGTYYVFGSHLASAKSTDLMNWTQISSSVHDGNPLIPNVYEELKETFEWAE 99

Query: 61  SDTLWAPDVIQLSDGKFYMYYDACRGDSPLSAMGIAVSDKIEGPYK 106
           SDTLWAPDV QL DGKFYMYY+ACRGDSP SA+G+AV+D IEGPYK
Sbjct: 100 SDTLWAPDVTQLEDGKFYMYYNACRGDSPRSALGLAVADDIEGPYK 145


>A7ZAE2.1 A7ZAE2_BACA2 YxiA
          Length = 468

 Score =  173 bits (439), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 81/106 (76%), Positives = 90/106 (84%)

Query: 1   VHDPSVIKVDEMYYVFGSHLASAKSKDLMSWTQLSSGVDDGNVLIPNVTEELSETLRWAQ 60
           VHDPSVIK  + YYVFGSHLASAKSK+LM W Q+SS V+  N LIPNV  EL ET  WAQ
Sbjct: 35  VHDPSVIKTGDTYYVFGSHLASAKSKNLMQWQQMSSSVNPNNPLIPNVYTELKETFDWAQ 94

Query: 61  SDTLWAPDVIQLSDGKFYMYYDACRGDSPLSAMGIAVSDKIEGPYK 106
           SDTLWAPDV QLSDGK+YMYY+AC+GDSP SA+G+AVSDKIEGPYK
Sbjct: 95  SDTLWAPDVAQLSDGKYYMYYNACKGDSPRSALGVAVSDKIEGPYK 140


>B3FRL6.1 B3FRL6_BACSU Endo-alpha-1,5-L-arabinanase EC=3.2.1.99
          Length = 469

 Score =  168 bits (425), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 76/106 (71%), Positives = 88/106 (83%)

Query: 1   VHDPSVIKVDEMYYVFGSHLASAKSKDLMSWTQLSSGVDDGNVLIPNVTEELSETLRWAQ 60
           VHDPS+I+ +  +YVFGSHLASAKS DLM W QL++ V + N LIPNV EEL ET  WAQ
Sbjct: 36  VHDPSIIETNGTFYVFGSHLASAKSNDLMQWQQLTTSVSNDNPLIPNVYEELKETFEWAQ 95

Query: 61  SDTLWAPDVIQLSDGKFYMYYDACRGDSPLSAMGIAVSDKIEGPYK 106
           SDTLWA DV QL+DGK+YMYY+ACRGDSP SAMG+AV+D IEGPYK
Sbjct: 96  SDTLWAADVTQLADGKYYMYYNACRGDSPRSAMGVAVADNIEGPYK 141


>P42293.2 YXIA_BACSU Uncharacterized protein yxiA
          Length = 469

 Score =  168 bits (425), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 76/106 (71%), Positives = 88/106 (83%)

Query: 1   VHDPSVIKVDEMYYVFGSHLASAKSKDLMSWTQLSSGVDDGNVLIPNVTEELSETLRWAQ 60
           VHDPS+I+ +  +YVFGSHLASAKS DLM W QL++ V + N LIPNV EEL ET  WAQ
Sbjct: 36  VHDPSIIETNGTFYVFGSHLASAKSNDLMQWQQLTTSVSNDNPLIPNVYEELKETFEWAQ 95

Query: 61  SDTLWAPDVIQLSDGKFYMYYDACRGDSPLSAMGIAVSDKIEGPYK 106
           SDTLWA DV QL+DGK+YMYY+ACRGDSP SAMG+AV+D IEGPYK
Sbjct: 96  SDTLWAADVTQLADGKYYMYYNACRGDSPRSAMGVAVADNIEGPYK 141


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.314    0.131    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 826,021,498
Number of extensions: 29227475
Number of successful extensions: 42351
Number of sequences better than 1.0e-05: 70
Number of HSP's gapped: 42414
Number of HSP's successfully gapped: 70
Length of query: 131
Length of database: 3,060,696,203
Length adjustment: 96
Effective length of query: 35
Effective length of database: 2,156,278,763
Effective search space: 75469756705
Effective search space used: 75469756705
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 125 (52.8 bits)