BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0217.0013.p
         (88 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K3Z9.1 B3K3Z9_9BACI Putative uncharacterized protein                123   5e-27
C0ZI83.1 C0ZI83_BREBN Putative DNA-binding protein                    120   5e-26
B1D5M4.1 B1D5M4_9BACL Helix-turn-helix domain protein                 118   2e-25
B4ANI8.1 B4ANI8_BACPU DNA-binding protein                             116   6e-25
A7Z1W8.1 A7Z1W8_BACA2 Putative uncharacterized protein                114   4e-24

>B3K3Z9.1 B3K3Z9_9BACI Putative uncharacterized protein
          Length = 279

 Score =  123 bits (309), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 53/78 (67%), Positives = 67/78 (85%)

Query: 1   LDFAKLPPEERNMISLLFVRKEFKRLAVNWQQFVRGYLSIFRAYYGQYVEDRWYDDFIAE 60
           LDF ++PPEERNMI LLF R+EF+RLAVNW+QF  G+LS+FR+YYGQYVED WYD F+ E
Sbjct: 146 LDFDRIPPEERNMIRLLFTRREFQRLAVNWEQFASGFLSMFRSYYGQYVEDEWYDHFLEE 205

Query: 61  MKERHPEFHPLWEESRVS 78
           MK  HP+F+ +WE+S+VS
Sbjct: 206 MKNGHPDFNRMWEQSQVS 223


>C0ZI83.1 C0ZI83_BREBN Putative DNA-binding protein
          Length = 297

 Score =  120 bits (300), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 52/79 (65%), Positives = 67/79 (84%)

Query: 1   LDFAKLPPEERNMISLLFVRKEFKRLAVNWQQFVRGYLSIFRAYYGQYVEDRWYDDFIAE 60
           LDF ++P EERN+I L+F RKE +RLAVNW+ FV G+L+IFRA YGQYVED WY+ F++E
Sbjct: 158 LDFEQIPYEERNLIRLVFTRKELRRLAVNWEHFVSGFLAIFRANYGQYVEDEWYEQFLSE 217

Query: 61  MKERHPEFHPLWEESRVSS 79
           M++ HP+FH LWE+SRVSS
Sbjct: 218 MRQVHPDFHDLWEQSRVSS 236


>B1D5M4.1 B1D5M4_9BACL Helix-turn-helix domain protein
          Length = 285

 Score =  118 bits (295), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 52/79 (65%), Positives = 62/79 (78%)

Query: 1   LDFAKLPPEERNMISLLFVRKEFKRLAVNWQQFVRGYLSIFRAYYGQYVEDRWYDDFIAE 60
           +DFA++P +ERNMI LLF RKE +RLAVNW+QF  G+LSIFRAYYGQYVED WYD F+ E
Sbjct: 150 VDFAQIPEQERNMIRLLFTRKELRRLAVNWKQFASGFLSIFRAYYGQYVEDNWYDQFLKE 209

Query: 61  MKERHPEFHPLWEESRVSS 79
           M   HP+F  LWE S V +
Sbjct: 210 MTGLHPDFQELWEHSEVRT 228


>B4ANI8.1 B4ANI8_BACPU DNA-binding protein
          Length = 278

 Score =  116 bits (291), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 50/79 (63%), Positives = 63/79 (79%)

Query: 1   LDFAKLPPEERNMISLLFVRKEFKRLAVNWQQFVRGYLSIFRAYYGQYVEDRWYDDFIAE 60
           LDF ++ P ERN+I LLF RKEFK LAVNW+ FVRGY++IFR YYGQYV D WY+ FI E
Sbjct: 146 LDFEQITPAERNIIRLLFARKEFKSLAVNWEHFVRGYIAIFRTYYGQYVADDWYEQFIQE 205

Query: 61  MKERHPEFHPLWEESRVSS 79
           M++ +PEFH +W E+ +SS
Sbjct: 206 MEQAYPEFHKIWNENEISS 224


>A7Z1W8.1 A7Z1W8_BACA2 Putative uncharacterized protein
          Length = 279

 Score =  114 bits (284), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 49/79 (62%), Positives = 62/79 (78%)

Query: 1   LDFAKLPPEERNMISLLFVRKEFKRLAVNWQQFVRGYLSIFRAYYGQYVEDRWYDDFIAE 60
           LDF ++PPE+RN+I LLF RKE + LAVNW+ FV+G+++IFR YYGQYV D WY  FI E
Sbjct: 146 LDFEQIPPEKRNLIELLFSRKELRSLAVNWEHFVKGFIAIFRTYYGQYVADTWYSQFIEE 205

Query: 61  MKERHPEFHPLWEESRVSS 79
           M++ + EFH LW ES VSS
Sbjct: 206 MEKTYSEFHKLWNESEVSS 224


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.324    0.142    0.470 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 561,072,194
Number of extensions: 18819285
Number of successful extensions: 40425
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 40475
Number of HSP's successfully gapped: 13
Length of query: 88
Length of database: 3,060,696,203
Length adjustment: 58
Effective length of query: 30
Effective length of database: 2,514,277,333
Effective search space: 75428319990
Effective search space used: 75428319990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 125 (52.8 bits)