BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0217.0012.p
         (53 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1D5M4.1 B1D5M4_9BACL Helix-turn-helix domain protein                  86   1e-15
B3K3Z9.1 B3K3Z9_9BACI Putative uncharacterized protein                 85   2e-15
C0ZI83.1 C0ZI83_BREBN Putative DNA-binding protein                     82   1e-14
C3EVB2.1 C3EVB2_BACTK Helix-turn-helix domain protein                  80   6e-14
B4ANI8.1 B4ANI8_BACPU DNA-binding protein                              80   8e-14

>B1D5M4.1 B1D5M4_9BACL Helix-turn-helix domain protein
          Length = 285

 Score = 85.9 bits (211), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/49 (81%), Positives = 43/49 (87%)

Query: 1   VVLEFRHAKAGKMLFHLTSLQVHGSTDLRCSIYTPAGDSNTEAKLRQLM 49
           VVLEFRHAKAGKMLFHLTSLQ+ G +DLRCSIYTPA DS TE KL +LM
Sbjct: 232 VVLEFRHAKAGKMLFHLTSLQLQGGSDLRCSIYTPAPDSETEEKLSKLM 280


>B3K3Z9.1 B3K3Z9_9BACI Putative uncharacterized protein
          Length = 279

 Score = 85.1 bits (209), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/52 (75%), Positives = 47/52 (90%)

Query: 1   VVLEFRHAKAGKMLFHLTSLQVHGSTDLRCSIYTPAGDSNTEAKLRQLMEQQ 52
           V LEFRHAKAGKM++ LTSL+V+G+ DLRCSIYTPA D+ TEAKLRQLME++
Sbjct: 228 VHLEFRHAKAGKMVYELTSLKVYGNDDLRCSIYTPAPDTTTEAKLRQLMEEK 279


>C0ZI83.1 C0ZI83_BREBN Putative DNA-binding protein
          Length = 297

 Score = 82.4 bits (202), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/53 (71%), Positives = 44/53 (83%)

Query: 1   VVLEFRHAKAGKMLFHLTSLQVHGSTDLRCSIYTPAGDSNTEAKLRQLMEQQV 53
           V+LEFRHAK GKMLFHLTSLQV G+ DLRCSIYTP  +S TE KL QL+++ V
Sbjct: 240 VLLEFRHAKVGKMLFHLTSLQVSGNADLRCSIYTPDPNSATETKLWQLIDRPV 292


>C3EVB2.1 C3EVB2_BACTK Helix-turn-helix domain protein
          Length = 283

 Score = 80.1 bits (196), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 34/51 (66%), Positives = 45/51 (88%)

Query: 1   VVLEFRHAKAGKMLFHLTSLQVHGSTDLRCSIYTPAGDSNTEAKLRQLMEQ 51
           +++EFRHAKAGKMLF+LTS QV G  DLRCSIYTP G+++TE KL++LM++
Sbjct: 228 MIIEFRHAKAGKMLFNLTSFQVQGDMDLRCSIYTPVGETDTENKLKRLMKR 278


>B4ANI8.1 B4ANI8_BACPU DNA-binding protein
          Length = 278

 Score = 79.7 bits (195), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 35/50 (70%), Positives = 43/50 (86%)

Query: 1   VVLEFRHAKAGKMLFHLTSLQVHGSTDLRCSIYTPAGDSNTEAKLRQLME 50
           V++EFRHAK GKMLF+LTSLQVHG TDLRCS+YTP   + TE KL++L+E
Sbjct: 228 VLIEFRHAKVGKMLFNLTSLQVHGDTDLRCSVYTPVEKTETELKLKRLIE 277


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.321    0.131    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 274,517,347
Number of extensions: 6610282
Number of successful extensions: 11436
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 11436
Number of HSP's successfully gapped: 8
Length of query: 53
Length of database: 3,060,696,203
Length adjustment: 26
Effective length of query: 27
Effective length of database: 2,815,749,813
Effective search space: 76025244951
Effective search space used: 76025244951
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)