BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0217.0009.p (258 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KBG0.1 B3KBG0_9BACI Exodeoxyribonuclease III Xth EC=4.2.99.18 430 e-119 C0ZIR8.1 C0ZIR8_BREBN Exodeoxyribonuclease EC=3.1.11.2 424 e-117 B1DAM9.1 B1DAM9_9BACL Exodeoxyribonuclease III Xth EC=4.2.99.18 394 e-108 C1PFC6.1 C1PFC6_BACCO Exodeoxyribonuclease III EC=4.2.99.18 389 e-106 Q2BAG8.1 Q2BAG8_9BACI Exodeoxyribonuclease III 377 e-103 >B3KBG0.1 B3KBG0_9BACI Exodeoxyribonuclease III Xth EC=4.2.99.18 Length = 250 Score = 430 bits (1106), Expect = e-119, Method: Compositional matrix adjust. Identities = 198/249 (79%), Positives = 225/249 (90%) Query: 3 KLVSWNVNGLRACVSKGFMNYFKEAEADIFCVQETKLQEGQILLDLGEAYEQYWNYAVKK 62 KLVSWNVNGLRACV+KGFM+YF EA+ADIFCVQETKLQ GQI LDLG Y+QYWNYA KK Sbjct: 2 KLVSWNVNGLRACVTKGFMDYFNEADADIFCVQETKLQAGQIELDLGPEYQQYWNYAEKK 61 Query: 63 GYSGTAVFTKIKPLSVRYGMEVDSEPEGRMITLEFNGFYLVNVYTPNAKRDLTRLDYRME 122 GYSGTAVFT+I PLSVRYG+E DSEPEGR+ITLEF GFYLVNVYTPNAKRDL+RLDYR+E Sbjct: 62 GYSGTAVFTRIAPLSVRYGLEEDSEPEGRVITLEFEGFYLVNVYTPNAKRDLSRLDYRLE 121 Query: 123 WEDRFRSYLQELDKRKPVLVCGDLNVAHQEIDLKNAKANRGNSGFTDEERGKMTELLESG 182 WE+RFR+YL +LD+RKPV+VCGDLNVAHQEIDLKNAK+N GNSGFT EERGKMT+LL +G Sbjct: 122 WEERFRTYLLQLDERKPVIVCGDLNVAHQEIDLKNAKSNHGNSGFTLEERGKMTDLLAAG 181 Query: 183 FIDSFRHLHPDQEGAYTWWSYMPKIRERNVGWRIDYFLASSRLAPQLKMAGIECNVMGSD 242 FIDSFRH +PD+ Y+WWSYM K+RERN+GWRIDYFL S+RLA +LK A I+C+V+GSD Sbjct: 182 FIDSFRHFYPDRTDVYSWWSYMAKVRERNIGWRIDYFLTSARLAEKLKDAEIDCHVLGSD 241 Query: 243 HCPVVLQLE 251 HCPV L LE Sbjct: 242 HCPVSLTLE 250 >C0ZIR8.1 C0ZIR8_BREBN Exodeoxyribonuclease EC=3.1.11.2 Length = 253 Score = 424 bits (1090), Expect = e-117, Method: Compositional matrix adjust. Identities = 194/248 (78%), Positives = 222/248 (89%) Query: 3 KLVSWNVNGLRACVSKGFMNYFKEAEADIFCVQETKLQEGQILLDLGEAYEQYWNYAVKK 62 KL+SWNVNGLRACV+KGF YFKEA ADIFC+QETKLQEGQI +++GEAY QYWNYA KK Sbjct: 2 KLISWNVNGLRACVNKGFYEYFKEANADIFCLQETKLQEGQIEMEIGEAYHQYWNYAEKK 61 Query: 63 GYSGTAVFTKIKPLSVRYGMEVDSEPEGRMITLEFNGFYLVNVYTPNAKRDLTRLDYRME 122 GYSGTAVFTK++PLSVRYG+E D EPEGR+ITLEF FYLV VYTPNAKRDL+RLDYR+E Sbjct: 62 GYSGTAVFTKMEPLSVRYGLEEDHEPEGRVITLEFQDFYLVTVYTPNAKRDLSRLDYRLE 121 Query: 123 WEDRFRSYLQELDKRKPVLVCGDLNVAHQEIDLKNAKANRGNSGFTDEERGKMTELLESG 182 WEDRFR+YL +LD +KPV+VCGDLNVAHQEIDLKNAK+NRGNSGFT EER KMT LL +G Sbjct: 122 WEDRFRNYLLQLDGKKPVVVCGDLNVAHQEIDLKNAKSNRGNSGFTPEEREKMTSLLAAG 181 Query: 183 FIDSFRHLHPDQEGAYTWWSYMPKIRERNVGWRIDYFLASSRLAPQLKMAGIECNVMGSD 242 F+D++R+ +PDQ AYTWWS+MPK+RERN+GWRIDYFLAS RLAP L AGI+ VMGSD Sbjct: 182 FVDTYRYFYPDQTDAYTWWSFMPKVRERNIGWRIDYFLASERLAPALLRAGIDSQVMGSD 241 Query: 243 HCPVVLQL 250 HCPVVL+L Sbjct: 242 HCPVVLEL 249 >B1DAM9.1 B1DAM9_9BACL Exodeoxyribonuclease III Xth EC=4.2.99.18 Length = 258 Score = 394 bits (1012), Expect = e-108, Method: Compositional matrix adjust. Identities = 181/250 (72%), Positives = 217/250 (86%), Gaps = 1/250 (0%) Query: 3 KLVSWNVNGLRACVSKGFMNYFKEAEADIFCVQETKLQEGQILLDLGEAYEQYWNYAVKK 62 K VSWNVNGLRA V+KGF++YF E +AD FC+QETKLQEGQI L+LGEAY +W+YA KK Sbjct: 2 KFVSWNVNGLRASVNKGFLDYFNEMDADFFCLQETKLQEGQIKLELGEAYHLFWHYAEKK 61 Query: 63 GYSGTAVFTKIKPLSVRYGM-EVDSEPEGRMITLEFNGFYLVNVYTPNAKRDLTRLDYRM 121 GYSGTA+FTK KPLS+ YG+ E D + EGR+ITLE+ FYLV VYTPNA+RDL+RLD+R+ Sbjct: 62 GYSGTAIFTKHKPLSISYGLGEEDEDTEGRVITLEYENFYLVTVYTPNARRDLSRLDFRL 121 Query: 122 EWEDRFRSYLQELDKRKPVLVCGDLNVAHQEIDLKNAKANRGNSGFTDEERGKMTELLES 181 WE+ FR YL +LD+ KPV+VCGDLNVAHQ+IDLKNAK+NRGNSGFTDEER KMT LL++ Sbjct: 122 AWEEMFRGYLIKLDEHKPVIVCGDLNVAHQDIDLKNAKSNRGNSGFTDEEREKMTRLLDA 181 Query: 182 GFIDSFRHLHPDQEGAYTWWSYMPKIRERNVGWRIDYFLASSRLAPQLKMAGIECNVMGS 241 GFIDSFR+L+PD+ AYTWWS+MPKIRERNVGWRIDYFLAS+RLAP + AGI+ ++GS Sbjct: 182 GFIDSFRYLYPDRTDAYTWWSFMPKIRERNVGWRIDYFLASARLAPAIVEAGIDSQILGS 241 Query: 242 DHCPVVLQLE 251 DHCPVVL L+ Sbjct: 242 DHCPVVLTLD 251 >C1PFC6.1 C1PFC6_BACCO Exodeoxyribonuclease III EC=4.2.99.18 Length = 251 Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust. Identities = 184/248 (74%), Positives = 212/248 (85%), Gaps = 2/248 (0%) Query: 3 KLVSWNVNGLRACVSKGFMNYFKEAEADIFCVQETKLQEGQILLDLGEAYEQYWNYAVKK 62 K VSWNVNGLRACV KGF+ +F E +ADIFCVQETKLQ GQI LDL + Y QYWNYA +K Sbjct: 2 KFVSWNVNGLRACVKKGFLAFFAETDADIFCVQETKLQAGQIALDL-DGYYQYWNYAERK 60 Query: 63 GYSGTAVFTKIKPLSVRYGMEVD-SEPEGRMITLEFNGFYLVNVYTPNAKRDLTRLDYRM 121 GYSGTAVFTK +PLSVRYG+ D +EPEGR++TLE+ FYLVNVYTPN++RDL RL YR+ Sbjct: 61 GYSGTAVFTKKEPLSVRYGVGEDRTEPEGRILTLEYEDFYLVNVYTPNSQRDLARLGYRL 120 Query: 122 EWEDRFRSYLQELDKRKPVLVCGDLNVAHQEIDLKNAKANRGNSGFTDEERGKMTELLES 181 EWEDR R+YL ELDK+KPV+VCGD+NVAHQEIDLKNAK N GNSGFT EERGKMT LL S Sbjct: 121 EWEDRMRAYLTELDKKKPVIVCGDMNVAHQEIDLKNAKNNVGNSGFTAEERGKMTGLLNS 180 Query: 182 GFIDSFRHLHPDQEGAYTWWSYMPKIRERNVGWRIDYFLASSRLAPQLKMAGIECNVMGS 241 GFIDSFR+ +P++EGAYTWWSYM K+RERN+GWRIDYFL S RLA +LK AG+ +MGS Sbjct: 181 GFIDSFRYFYPEREGAYTWWSYMNKVRERNIGWRIDYFLVSKRLAGRLKDAGMYPEIMGS 240 Query: 242 DHCPVVLQ 249 DHCPV L+ Sbjct: 241 DHCPVFLE 248 >Q2BAG8.1 Q2BAG8_9BACI Exodeoxyribonuclease III Length = 251 Score = 377 bits (968), Expect = e-103, Method: Compositional matrix adjust. Identities = 171/249 (68%), Positives = 211/249 (84%), Gaps = 2/249 (0%) Query: 3 KLVSWNVNGLRACVSKGFMNYFKEAEADIFCVQETKLQEGQILLDLGEAYEQYWNYAVKK 62 KLVSWNVNG+RACV KGF+++F E ADIFC+QE+KLQEGQI L+L + Y QYWNYA KK Sbjct: 2 KLVSWNVNGIRACVKKGFLDFFMEENADIFCIQESKLQEGQIELNL-DGYHQYWNYAEKK 60 Query: 63 GYSGTAVFTKIKPLSVRYGME-VDSEPEGRMITLEFNGFYLVNVYTPNAKRDLTRLDYRM 121 GYSGTAVFTK KPL V YG+ ++EPEGR +TLEF FYL+NVYTPN+KRDL RL YR+ Sbjct: 61 GYSGTAVFTKEKPLYVSYGIAGRETEPEGRSLTLEFENFYLLNVYTPNSKRDLARLPYRL 120 Query: 122 EWEDRFRSYLQELDKRKPVLVCGDLNVAHQEIDLKNAKANRGNSGFTDEERGKMTELLES 181 EWED R Y+ EL+++KPV++CGDLNVAH +IDLKNA++NRGNSGFTDEERGKMT LL Sbjct: 121 EWEDEIREYILELEQKKPVILCGDLNVAHLDIDLKNARSNRGNSGFTDEERGKMTSLLSE 180 Query: 182 GFIDSFRHLHPDQEGAYTWWSYMPKIRERNVGWRIDYFLASSRLAPQLKMAGIECNVMGS 241 GF+DSFR+L+P+QEGAYTWWSYM K+RERN+GWRIDYF+ S +L + + I C++MGS Sbjct: 181 GFVDSFRYLYPEQEGAYTWWSYMAKVRERNIGWRIDYFIVSDKLKEHILDSKIYCDIMGS 240 Query: 242 DHCPVVLQL 250 DHCP++L++ Sbjct: 241 DHCPIMLEM 249 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,586,236,248 Number of extensions: 66009421 Number of successful extensions: 146001 Number of sequences better than 1.0e-05: 2073 Number of HSP's gapped: 140680 Number of HSP's successfully gapped: 2082 Length of query: 258 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 125 Effective length of database: 1,807,701,208 Effective search space: 225962651000 Effective search space used: 225962651000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)