BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0217.0005.p
         (90 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1D4V9.1 B1D4V9_9BACL Putative uncharacterized protein                 83   6e-15
C0ZKT0.1 C0ZKT0_BREBN Putative uncharacterized protein                 59   1e-07

>B1D4V9.1 B1D4V9_9BACL Putative uncharacterized protein
          Length = 116

 Score = 83.2 bits (204), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 37/74 (50%), Positives = 57/74 (77%)

Query: 2  EKKVQQYYKLKAKHKEMEKELSGLRQDILAYCTEKGEADSEIGGYRVKLITQNRKEYDDE 61
          + KV++YY+LK K KE+E+ELS LR +I+ +C E   ++ E+G Y++K+++Q RKE+D+ 
Sbjct: 3  DNKVKRYYQLKQKQKEIEQELSELRGEIVQHCAELELSELEVGSYKLKIVSQERKEFDES 62

Query: 62 KLFQTLADPEVWRL 75
          KLF  L DP+VWRL
Sbjct: 63 KLFAALPDPDVWRL 76


>C0ZKT0.1 C0ZKT0_BREBN Putative uncharacterized protein
          Length = 113

 Score = 59.3 bits (142), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 50/75 (66%), Gaps = 2/75 (2%)

Query: 1  MEKKVQQYYKLKAKHKEMEKELSGLRQDILAYCTEKGEADSEIGGYRVKLITQNRKEYDD 60
          M++ + +YY+LK   K++E+EL+ LR  ++   +E G  +   G Y++++  Q R+EY+D
Sbjct: 1  MDQPIARYYELKEIQKQLEEELNELRSKLIEAYSEAGSVEE--GEYKLQISYQERREYND 58

Query: 61 EKLFQTLADPEVWRL 75
          ++L+  L DP +WRL
Sbjct: 59 DRLYNALPDPSLWRL 73


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.313    0.131    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 493,301,014
Number of extensions: 17030881
Number of successful extensions: 37181
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 37181
Number of HSP's successfully gapped: 2
Length of query: 90
Length of database: 3,060,696,203
Length adjustment: 60
Effective length of query: 30
Effective length of database: 2,495,435,303
Effective search space: 74863059090
Effective search space used: 74863059090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 125 (52.8 bits)