BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0216.0002.p (199 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value P12921.4 TMRB_BACSU Tunicamycin resistance protein 225 2e-57 A7Z161.1 A7Z161_BACA2 TmrB 224 4e-57 A4INP6.1 A4INP6_GEOTN ATP-binding membrane protein 211 4e-53 B4BJN6.1 B4BJN6_9BACI ATP-binding membrane protein 207 6e-52 A8MLZ4.1 A8MLZ4_ALKOO ATP-binding membrane protein 202 1e-50 >P12921.4 TMRB_BACSU Tunicamycin resistance protein Length = 197 Score = 225 bits (573), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 103/196 (52%), Positives = 137/196 (69%) Query: 1 MILWINGAFGSGKTQTAFELNRRIPHSFVFDPENAGYYIQKNIPSTLKKNDFQNYSQWRE 60 MI+WINGAFGSGKTQTAFEL+RR+ S+V+DPE G+ ++ +P + K+DFQ+Y WR Sbjct: 1 MIIWINGAFGSGKTQTAFELHRRLNPSYVYDPEKMGFALRSMVPQEIAKDDFQSYPLWRA 60 Query: 61 FNYSMLRYIASEFEGIIIVPMTIVEPDYFREIVGRLREDGIKVYHYTLYVXXXXXXXXXX 120 FNYS+L + + GI+IVPMTIV P+YF EI+GRLR++G V+H+TL Sbjct: 61 FNYSLLASLTDTYRGILIVPMTIVHPEYFNEIIGRLRQEGRIVHHFTLMASKETLLKRLR 120 Query: 121 XXGEGKHSWAANQIDRCLKGHQHPIFAEQLVTDNMSIEQVAEAIAAKLQISLLPAAPGRM 180 EGK+SWAA QIDRC++G PIF + + TDN+SI+ VAE IAA+ ++ L P G + Sbjct: 121 TRAEGKNSWAAKQIDRCVEGLSSPIFEDHIQTDNLSIQDVAENIAARAELPLDPDTRGSL 180 Query: 181 RRFIQRLKVKYQHIRL 196 RRF RL VK HIR+ Sbjct: 181 RRFADRLMVKLNHIRI 196 >A7Z161.1 A7Z161_BACA2 TmrB Length = 198 Score = 224 bits (571), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 103/196 (52%), Positives = 134/196 (68%) Query: 1 MILWINGAFGSGKTQTAFELNRRIPHSFVFDPENAGYYIQKNIPSTLKKNDFQNYSQWRE 60 MI+WINGAFGSGKTQTAFEL+RR+ S+V+DPE G+ ++ IP + ++DFQ+Y WRE Sbjct: 2 MIIWINGAFGSGKTQTAFELHRRLKPSYVYDPEKMGFAMRSMIPPDIAEDDFQSYPLWRE 61 Query: 61 FNYSMLRYIASEFEGIIIVPMTIVEPDYFREIVGRLREDGIKVYHYTLYVXXXXXXXXXX 120 FNYSML Y++ ++GIIIVPMTI YF +I+ RLR+DG ++H+TL Sbjct: 62 FNYSMLSYLSDTYQGIIIVPMTITNDQYFHDIISRLRQDGRTIHHFTLLASKETLLKRLR 121 Query: 121 XXGEGKHSWAANQIDRCLKGHQHPIFAEQLVTDNMSIEQVAEAIAAKLQISLLPAAPGRM 180 EGK+SWAA QIDRC+ +F E L TD MSI+QVAE IAA+ + L P + G + Sbjct: 122 TRAEGKNSWAAKQIDRCINSLSDSLFTEHLHTDQMSIQQVAETIAAQANLPLEPDSRGSL 181 Query: 181 RRFIQRLKVKYQHIRL 196 RRF RL VK HIR+ Sbjct: 182 RRFTDRLMVKLNHIRI 197 >A4INP6.1 A4INP6_GEOTN ATP-binding membrane protein Length = 195 Score = 211 bits (536), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 95/195 (48%), Positives = 132/195 (67%) Query: 1 MILWINGAFGSGKTQTAFELNRRIPHSFVFDPENAGYYIQKNIPSTLKKNDFQNYSQWRE 60 MI+WINGAFGSGKT A+ELN+R+P SFV+DPEN GY+I+KNIP L ++DFQN+ QWR Sbjct: 1 MIIWINGAFGSGKTTCAYELNKRLPKSFVYDPENIGYFIRKNIPKELHESDFQNHEQWRL 60 Query: 61 FNYSMLRYIASEFEGIIIVPMTIVEPDYFREIVGRLREDGIKVYHYTLYVXXXXXXXXXX 120 FNY ML+Y++ ++GIII PMT++ Y+ EI+GRL EDGI++ HY LY Sbjct: 61 FNYQMLKYLSDTYDGIIISPMTLINRQYYDEIIGRLLEDGIEIKHYILYAEKETIEKRLN 120 Query: 121 XXGEGKHSWAANQIDRCLKGHQHPIFAEQLVTDNMSIEQVAEAIAAKLQISLLPAAPGRM 180 E +SWA +QIDRC+ H I E+++TD +++ + E IA K ++LL GR Sbjct: 121 KRLEWGNSWAKSQIDRCIYAFNHEITEEKIITDYKTVDNIVEEIAEKSGLTLLNDKRGRF 180 Query: 181 RRFIQRLKVKYQHIR 195 ++ I R + +HIR Sbjct: 181 KKLIDRSIILMKHIR 195 >B4BJN6.1 B4BJN6_9BACI ATP-binding membrane protein Length = 196 Score = 207 bits (526), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 96/196 (48%), Positives = 132/196 (67%), Gaps = 1/196 (0%) Query: 1 MILWINGAFGSGKTQTAFELNRRIPHSFVFDPENAGYYIQKNIPSTLKKNDFQNYSQWRE 60 MI+WINGAFGSGKT A+ELN+R+P SFV+DPEN GY+I+KNIP L ++DFQN+ QWR Sbjct: 1 MIIWINGAFGSGKTTCAYELNKRLPKSFVYDPENIGYFIRKNIPKELHESDFQNHGQWRL 60 Query: 61 FNYSMLRYIASEFEGIIIVPMTIVEPD-YFREIVGRLREDGIKVYHYTLYVXXXXXXXXX 119 FNY MLRY++ ++GIII PMT++ Y+ EI+GRL EDGI++ HY LY Sbjct: 61 FNYQMLRYLSDTYDGIIISPMTLINRQYYYDEIIGRLLEDGIEIKHYILYAEKETIEKRL 120 Query: 120 XXXGEGKHSWAANQIDRCLKGHQHPIFAEQLVTDNMSIEQVAEAIAAKLQISLLPAAPGR 179 E +SWA +QIDRC+ H I E+++TD +++ + E IA K ++LL GR Sbjct: 121 NKRLEWGNSWAKSQIDRCIYAFNHEITEEKIITDYKTVDNIVEEIAEKSGLTLLNDKRGR 180 Query: 180 MRRFIQRLKVKYQHIR 195 ++ I R + +HIR Sbjct: 181 FKKLIDRSIILMKHIR 196 >A8MLZ4.1 A8MLZ4_ALKOO ATP-binding membrane protein Length = 195 Score = 202 bits (515), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 93/195 (47%), Positives = 129/195 (66%) Query: 1 MILWINGAFGSGKTQTAFELNRRIPHSFVFDPENAGYYIQKNIPSTLKKNDFQNYSQWRE 60 MI+WINGAFGSGKT +ELN+R+ +SFV+DPEN GY+I+KNIP L ++DFQN+ QWR Sbjct: 1 MIIWINGAFGSGKTTCTYELNKRLSNSFVYDPENIGYFIRKNIPKELYESDFQNHDQWRV 60 Query: 61 FNYSMLRYIASEFEGIIIVPMTIVEPDYFREIVGRLREDGIKVYHYTLYVXXXXXXXXXX 120 FNY ML+Y+ S +EGII+VPMT+V Y+ EI+GRL ++ IKV HY LY Sbjct: 61 FNYEMLKYLNSTYEGIILVPMTLVNRQYYDEIIGRLIKENIKVKHYILYAEKKTIEKRLN 120 Query: 121 XXGEGKHSWAANQIDRCLKGHQHPIFAEQLVTDNMSIEQVAEAIAAKLQISLLPAAPGRM 180 E +SWA +QIDRC+ H I E+++TD+ +I+ + E IA K ++L G Sbjct: 121 KRFEWSNSWAKSQIDRCIYAFNHHITEEKIITDHKTIDDIVEEIAEKSGLTLRSDKRGHF 180 Query: 181 RRFIQRLKVKYQHIR 195 ++ + R +HIR Sbjct: 181 KKLMDRWATLIKHIR 195 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.324 0.139 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,125,329,581 Number of extensions: 40897640 Number of successful extensions: 135241 Number of sequences better than 1.0e-05: 61 Number of HSP's gapped: 135188 Number of HSP's successfully gapped: 61 Length of query: 199 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 70 Effective length of database: 1,845,385,268 Effective search space: 129176968760 Effective search space used: 129176968760 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 127 (53.5 bits)