BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0214.0002.p
         (86 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KA70.1 B3KA70_9BACI UspA domain protein                             131   2e-29
Q3AFY0.1 Q3AFY0_CARHZ Universal stress family protein                  79   1e-13
A6CPA9.1 A6CPA9_9BACI Universal stress protein                         74   5e-12
B2V6J7.1 B2V6J7_SULSY UspA domain protein                              72   1e-11
C4FM94.1 C4FM94_9AQUI Universal stress family protein                  72   1e-11

>B3KA70.1 B3KA70_9BACI UspA domain protein
          Length = 144

 Score =  131 bits (330), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 63/86 (73%), Positives = 74/86 (86%)

Query: 1   VNKDYYDLAVQTTDEVKSRLEAEGLNATVELLQGSPAEVILTYAKEQGADVIVIGSRGLG 60
           +NKD YDLAVQTT+E++ R+E  G+N  VE++QG PAEVIL YA + G+D+IVIGSRGLG
Sbjct: 59  LNKDVYDLAVQTTEEIRERIENSGVNGQVEMIQGPPAEVILEYADQNGSDLIVIGSRGLG 118

Query: 61  GIREFVLGSVSHNVVQSARIPVLVVK 86
           GIREFVLGSVSHNVVQ A IPVLVVK
Sbjct: 119 GIREFVLGSVSHNVVQHATIPVLVVK 144


>Q3AFY0.1 Q3AFY0_CARHZ Universal stress family protein
          Length = 149

 Score = 79.0 bits (193), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 60/87 (68%), Gaps = 11/87 (12%)

Query: 11  QTTDEVKS-----------RLEAEGLNATVELLQGSPAEVILTYAKEQGADVIVIGSRGL 59
           + TDE+K+           R+E  G++  +++L+G PA  I+ YA+E+G ++IV+G+RG+
Sbjct: 63  ELTDELKAKAEKTLRERLLRVEEAGVSGKIKVLEGEPASAIVNYAQEEGVELIVVGNRGI 122

Query: 60  GGIREFVLGSVSHNVVQSARIPVLVVK 86
            G++E +LGSVSH V Q AR PVL+VK
Sbjct: 123 SGVKELLLGSVSHKVSQLARCPVLIVK 149


>A6CPA9.1 A6CPA9_9BACI Universal stress protein
          Length = 139

 Score = 73.6 bits (179), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 51/80 (63%)

Query: 7   DLAVQTTDEVKSRLEAEGLNATVELLQGSPAEVILTYAKEQGADVIVIGSRGLGGIREFV 66
           D   +   EV+ + +  G++  +++L G P   I+ Y  +   D++VIGSRGL G++EFV
Sbjct: 60  DFRKERMKEVERQAKLAGVSYEIKILHGEPGPAIVEYVNKNQVDIVVIGSRGLNGLQEFV 119

Query: 67  LGSVSHNVVQSARIPVLVVK 86
           LGSVSH V + A  PVL+VK
Sbjct: 120 LGSVSHKVAKRANCPVLIVK 139


>B2V6J7.1 B2V6J7_SULSY UspA domain protein
          Length = 143

 Score = 72.4 bits (176), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 50/72 (69%)

Query: 15  EVKSRLEAEGLNATVELLQGSPAEVILTYAKEQGADVIVIGSRGLGGIREFVLGSVSHNV 74
           E   ++   GLN T ++++G PAE I+TYA E G+D+IV+G RG+GG +  ++GS S N+
Sbjct: 72  EAIQKVSQAGLNGTYKVMEGDPAEEIMTYADEVGSDLIVVGRRGVGGFKRLLIGSTSSNI 131

Query: 75  VQSARIPVLVVK 86
           V+ A   VLVVK
Sbjct: 132 VKYANQSVLVVK 143


>C4FM94.1 C4FM94_9AQUI Universal stress family protein
          Length = 143

 Score = 72.4 bits (176), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 50/72 (69%)

Query: 15  EVKSRLEAEGLNATVELLQGSPAEVILTYAKEQGADVIVIGSRGLGGIREFVLGSVSHNV 74
           E   ++   GLN T ++++G PAE I+TYA E G+D+IV+G RG+GG +  ++GS S N+
Sbjct: 72  EAIQKVSQAGLNGTYKVMEGDPAEEIMTYADEVGSDLIVVGRRGVGGFKRLLIGSTSSNI 131

Query: 75  VQSARIPVLVVK 86
           V+ A   VLVVK
Sbjct: 132 VKYANQSVLVVK 143


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.314    0.134    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 461,142,206
Number of extensions: 15967073
Number of successful extensions: 53781
Number of sequences better than 1.0e-05: 538
Number of HSP's gapped: 54212
Number of HSP's successfully gapped: 542
Length of query: 86
Length of database: 3,060,696,203
Length adjustment: 56
Effective length of query: 30
Effective length of database: 2,533,119,363
Effective search space: 75993580890
Effective search space used: 75993580890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 125 (52.8 bits)