BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0212.0015.p (222 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KL49.1 B3KL49_9BACI SpoVAA 253 7e-66 B1DJB4.1 B1DJB4_9BACL Putative uncharacterized protein 171 5e-41 A7Z690.1 A7Z690_BACA2 SpoVAA 164 6e-39 Q50J80.1 Q50J80_BACAM Stage V sporulation protein AA (Fragment) 164 6e-39 A6CMX4.1 A6CMX4_9BACI SpoVAA 164 7e-39 >B3KL49.1 B3KL49_9BACI SpoVAA Length = 214 Score = 253 bits (647), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 119/216 (55%), Positives = 159/216 (73%), Gaps = 2/216 (0%) Query: 1 MTAHSAPAIYIQLKNRVTVPKGKGVLLRDVAYLITDPEWREPLYSLLLLDPVQSDGNLIL 60 M + P +++QL++R+ +P+ + V L DVA+++ +PEW + L +L L P DGN ++ Sbjct: 1 MKVNPTPTVFLQLRSRIRLPRDQTVKLGDVAFIVCEPEWEKRLRALPLTQPKDIDGNRLV 60 Query: 61 IDLLTVIPKIHELVPGADIQPIGEGRTLVQIEGPVEARKPSIAXXXXXXXXXXXGSALTI 120 +DL+ +IPKI L+PGA I+P+G TLV++ GP R S GSALTI Sbjct: 61 MDLIQIIPKIQGLIPGAHIEPMGNHHTLVELVGPDSKR--SRLWFPLIWLLLFFGSALTI 118 Query: 121 MNFHADVSMLEVQVRIVEMLTGRRDEHPYVFQIAYSLGIGFGMVIFFNHLFKKKWNEEPT 180 MNFHADV+MLEVQ+RIVEM+TG+RDEHPY+FQIAYSLG+GFGM +FFNHLFKKKWNEEPT Sbjct: 119 MNFHADVNMLEVQIRIVEMVTGKRDEHPYLFQIAYSLGLGFGMTVFFNHLFKKKWNEEPT 178 Query: 181 PLEVEMFLYQKNIDHYVVNEEYSKMKNNGDESSRRP 216 PLEVEM+LYQ+N+D +VV EEY KM + D + +P Sbjct: 179 PLEVEMYLYQENLDQFVVAEEYRKMNASADTTGEKP 214 >B1DJB4.1 B1DJB4_9BACL Putative uncharacterized protein Length = 356 Score = 171 bits (432), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 88/205 (42%), Positives = 130/205 (63%), Gaps = 3/205 (1%) Query: 1 MTAHSAPAIYIQLKNRVTVPKGKGVLLRDVAYLIT-DPEWREPLYSLLLLDPVQSDGNLI 59 M A A+Y++LK +V + + V L V+ L+ + + + L L+L + DGN + Sbjct: 1 MEATEPSALYLRLKKKVCIRPERSVTLGQVSRLLAPNEKLEQELSELVLYRHHKGDGNRV 60 Query: 60 LIDLLTVIPKIHELVPGADIQPIGEGRTLVQIEGPVEARKPSIAXXXXXXXXXXXGSALT 119 +IDLL ++ + E PG ++ G+ + L+ I + +KP IA G+ L Sbjct: 61 VIDLLQIVRVVREAAPGLSVEAYGDPQVLIMISP--KPQKPRIAVLIFAWLLLFFGAGLA 118 Query: 120 IMNFHADVSMLEVQVRIVEMLTGRRDEHPYVFQIAYSLGIGFGMVIFFNHLFKKKWNEEP 179 IMNFH DVSM EV +RIVE+LTG+R +HP FQI YS+GIG GM++FFNHLFKK++NEEP Sbjct: 119 IMNFHTDVSMKEVHIRIVELLTGKRTDHPLWFQIPYSIGIGLGMILFFNHLFKKRFNEEP 178 Query: 180 TPLEVEMFLYQKNIDHYVVNEEYSK 204 PLEVE++ YQ+N++ YV+ +E K Sbjct: 179 NPLEVELYTYQENVNAYVIADEMRK 203 >A7Z690.1 A7Z690_BACA2 SpoVAA Length = 206 Score = 164 bits (415), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 81/203 (39%), Positives = 127/203 (62%), Gaps = 3/203 (1%) Query: 9 IYIQLKNRVTVPKGKGVLLRDVAYLITDPEWREPLYSLLLLDPVQSDGNLILIDLLTVIP 68 I+++L++RV G + + D A + + ++ L +L L + D N++++D++ V+ Sbjct: 5 IFLRLRHRVKAHTGDIITIGDAAQIAGQQKLKKKLSALPLYKVTKKDKNIVVLDIIKVLK 64 Query: 69 KIHELVPGADIQPIGEGRTLVQIEGPVEARKPSIAXXXXXXXXXXXGSALTIMNFHADVS 128 IH P D+Q +G T+V+I + ++ S GS L IMNFH DVS Sbjct: 65 TIHTAFPALDVQTVGGAETIVEIH--YQKKQLSAVLFVGVWLLLFIGSCLAIMNFHEDVS 122 Query: 129 MLEVQVRIVEMLTGRRDEHPYVFQIAYSLGIGFGMVIFFNHLFKKKWNEEPTPLEVEMFL 188 M EV + + E++TG R+E+PY+ QI YS+G+G GM++FFNH+FKK+ NEEP+PLEVEMF Sbjct: 123 MREVHIALYEIITGERNEYPYLLQIPYSIGLGLGMIVFFNHIFKKRLNEEPSPLEVEMFN 182 Query: 189 YQKNIDHYV-VNEEYSKMKNNGD 210 YQ ++DHYV ++E MK+ D Sbjct: 183 YQLDLDHYVAMHENEETMKDLHD 205 >Q50J80.1 Q50J80_BACAM Stage V sporulation protein AA (Fragment) Length = 206 Score = 164 bits (415), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 81/203 (39%), Positives = 127/203 (62%), Gaps = 3/203 (1%) Query: 9 IYIQLKNRVTVPKGKGVLLRDVAYLITDPEWREPLYSLLLLDPVQSDGNLILIDLLTVIP 68 I+++L++RV G + + D A + + ++ L +L L + D N++++D++ V+ Sbjct: 5 IFLRLRHRVKAHTGDIITIGDAAQIAGQQKLKKKLSALPLYKVTKKDKNIVVLDIIKVLK 64 Query: 69 KIHELVPGADIQPIGEGRTLVQIEGPVEARKPSIAXXXXXXXXXXXGSALTIMNFHADVS 128 IH P D+Q +G T+V+I + ++ S GS L IMNFH DVS Sbjct: 65 TIHTAFPALDVQTVGGAETIVEIH--YQKKQLSAVLFVGVWLLLFIGSCLAIMNFHEDVS 122 Query: 129 MLEVQVRIVEMLTGRRDEHPYVFQIAYSLGIGFGMVIFFNHLFKKKWNEEPTPLEVEMFL 188 M EV + + E++TG R+E+PY+ QI YS+G+G GM++FFNH+FKK+ NEEP+PLEVEMF Sbjct: 123 MREVHIALYEIITGERNEYPYLLQIPYSIGLGLGMIVFFNHIFKKRLNEEPSPLEVEMFN 182 Query: 189 YQKNIDHYV-VNEEYSKMKNNGD 210 YQ ++DHYV ++E MK+ D Sbjct: 183 YQLDLDHYVAMHENEETMKDLHD 205 >A6CMX4.1 A6CMX4_9BACI SpoVAA Length = 206 Score = 164 bits (414), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 83/205 (40%), Positives = 132/205 (64%), Gaps = 3/205 (1%) Query: 8 AIYIQLKNRVTVPKGKGVLLRDVAYLITDPEWREPLYSLLLLDPVQSDGNLILIDLLTVI 67 ++YI+L++ + V +LL + A +I + + + ++L + D N+I++DL+ VI Sbjct: 4 SVYIRLRHSLQVRPESSILLENTAQIIAPEHYLQAIRKIVLHKVTKEDKNIIILDLMRVI 63 Query: 68 PKIHELVPGADIQPIGEGRTLVQIEGPVEARKPSIAXXXXXXXXXXXGSALTIMNFHADV 127 +I ++P AD+Q IG +T+V++ + +K S A G+AL IMNFH DV Sbjct: 64 SQIKAVLPDADVQTIGPSQTIVEV--VYKRKKVSPALFAGVWLLLFIGAALAIMNFHEDV 121 Query: 128 SMLEVQVRIVEMLTGRRDEHPYVFQIAYSLGIGFGMVIFFNHLFKKKWNEEPTPLEVEMF 187 SM EV R+ M+TG+ D HP +FQ+ YS G+G GM++FFNH+F+K+ NEEP+PLEVEMF Sbjct: 122 SMREVHQRLYLMVTGKEDPHPLLFQVPYSFGLGLGMILFFNHVFRKRINEEPSPLEVEMF 181 Query: 188 LYQKNIDHYV-VNEEYSKMKNNGDE 211 YQ+++D YV ++E MK+ D+ Sbjct: 182 NYQQDLDRYVTMHENKESMKHLDDD 206 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.140 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,298,664,858 Number of extensions: 51829331 Number of successful extensions: 103219 Number of sequences better than 1.0e-05: 123 Number of HSP's gapped: 103051 Number of HSP's successfully gapped: 123 Length of query: 222 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 91 Effective length of database: 1,826,543,238 Effective search space: 166215434658 Effective search space used: 166215434658 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)