BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0212.0013.p
         (141 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KL50.1 B3KL50_9BACI Stage V sporulation protein AB                  144   3e-33
B1DJB4.1 B1DJB4_9BACL Putative uncharacterized protein                 92   1e-17
A6CMX5.1 A6CMX5_9BACI SpoVAB                                           79   2e-13
C0ZC66.1 C0ZC66_BREBN Stage V sporulation protein AB                   78   2e-13
C3BPH4.1 C3BPH4_9BACI Stage V sporulation protein AB                   74   3e-12

>B3KL50.1 B3KL50_9BACI Stage V sporulation protein AB
          Length = 142

 Score =  144 bits (363), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 67/109 (61%), Positives = 81/109 (74%)

Query: 33  DMVPRLAQLTSSYDKVHWYEGAMVGGSLLGTMSDFWNWRISAGPXXXXXXXXXXXXXXXX 92
           D++PRL+QLT++Y++VHWYEGA++ GS +GT++DFW W I  GP                
Sbjct: 34  DIIPRLSQLTATYNRVHWYEGALITGSFIGTVADFWRWSIPLGPVVSTVIGLMCGIFIGM 93

Query: 93  XAAALTEVLNVLPILAKRLRMTHLLFGLLMAMVCGKVAGSLFDWFVYQQ 141
            AAALTEVLNVLPILAKRLR+   LFGLLMAMV GKVAGSLFDWFVY +
Sbjct: 94  LAAALTEVLNVLPILAKRLRLKGYLFGLLMAMVAGKVAGSLFDWFVYSK 142


>B1DJB4.1 B1DJB4_9BACL Putative uncharacterized protein
          Length = 356

 Score = 92.4 bits (228), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/109 (44%), Positives = 66/109 (60%), Gaps = 1/109 (0%)

Query: 33  DMVPRLAQLTSSYDKVHWYEGAMVGGSLLGTMSDFWNWRIS-AGPXXXXXXXXXXXXXXX 91
           D++PRLAQ+  +Y    W+E A++ GS+  T +DF +WR++                   
Sbjct: 247 DLIPRLAQIAYAYRVSIWFETAVICGSMYWTFADFMDWRLALPKAIILTISGLMTGMFVG 306

Query: 92  XXAAALTEVLNVLPILAKRLRMTHLLFGLLMAMVCGKVAGSLFDWFVYQ 140
             A ALTEV+NVLPILAKR+ ++  L GL+MAMV GK  GSLFDW  +Q
Sbjct: 307 MLAGALTEVMNVLPILAKRMNLSDYLVGLVMAMVLGKTLGSLFDWLYFQ 355


>A6CMX5.1 A6CMX5_9BACI SpoVAB
          Length = 140

 Score = 78.6 bits (192), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 60/109 (55%)

Query: 33  DMVPRLAQLTSSYDKVHWYEGAMVGGSLLGTMSDFWNWRISAGPXXXXXXXXXXXXXXXX 92
            ++PRL QLT +   +H+YE A+V G+ +G++     + +   P                
Sbjct: 31  GIIPRLTQLTKTMKMIHYYEWAIVLGATVGSIFSLNEFSLGFSPYLLVPVGLMSGIFVGM 90

Query: 93  XAAALTEVLNVLPILAKRLRMTHLLFGLLMAMVCGKVAGSLFDWFVYQQ 141
            AA LTEVLNVLPIL KR+ +   +  LLMA+V GKV GSLF W  + +
Sbjct: 91  LAAGLTEVLNVLPILTKRIGINDRIITLLMAIVFGKVLGSLFHWIYFVR 139


>C0ZC66.1 C0ZC66_BREBN Stage V sporulation protein AB
          Length = 139

 Score = 78.2 bits (191), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 58/107 (54%)

Query: 33  DMVPRLAQLTSSYDKVHWYEGAMVGGSLLGTMSDFWNWRISAGPXXXXXXXXXXXXXXXX 92
           D++PRL QLT++   +   E A+V G+L  T  DF++W                      
Sbjct: 32  DIIPRLTQLTNAQRYIRSLEWALVAGALFFTFIDFFHWGAHLPVIVSSIYGIFAGIFVGT 91

Query: 93  XAAALTEVLNVLPILAKRLRMTHLLFGLLMAMVCGKVAGSLFDWFVY 139
            AA LTEVLNV PILAKR+ M   L  LLMA+V GKV GSL  W ++
Sbjct: 92  LAAGLTEVLNVFPILAKRIHMDGSLLFLLMAVVLGKVTGSLLQWLLH 138


>C3BPH4.1 C3BPH4_9BACI Stage V sporulation protein AB
          Length = 116

 Score = 74.3 bits (181), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/108 (41%), Positives = 60/108 (55%)

Query: 34  MVPRLAQLTSSYDKVHWYEGAMVGGSLLGTMSDFWNWRISAGPXXXXXXXXXXXXXXXXX 93
           ++PRLAQLT S  +V ++E A++GGSL G      +                        
Sbjct: 9   VIPRLAQLTRSGHRVQFFEWAVIGGSLAGAWCSLRDITFQTSQYWLVLLGLFCGTFIGML 68

Query: 94  AAALTEVLNVLPILAKRLRMTHLLFGLLMAMVCGKVAGSLFDWFVYQQ 141
           AAALTEVLNVLPILAKR+ +   +  LL+A+V GKV GSLF W  + +
Sbjct: 69  AAALTEVLNVLPILAKRVGVDGKIVILLVALVLGKVMGSLFHWIYFAR 116


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.326    0.136    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 511,562,075
Number of extensions: 13267328
Number of successful extensions: 49978
Number of sequences better than 1.0e-05: 98
Number of HSP's gapped: 49927
Number of HSP's successfully gapped: 98
Length of query: 141
Length of database: 3,060,696,203
Length adjustment: 104
Effective length of query: 37
Effective length of database: 2,080,910,643
Effective search space: 76993693791
Effective search space used: 76993693791
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 126 (53.1 bits)