BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0212.0010.p (127 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KL52.1 B3KL52_9BACI Diaminopimelate decarboxylase EC=4.1.1.20 226 4e-58 B1DJB2.1 B1DJB2_9BACL Diaminopimelate decarboxylase EC=4.1.1.20 206 5e-52 C0ZC72.1 C0ZC72_BREBN Diaminopimelate decarboxylase EC=4.1.1.20 188 2e-46 C2W5T8.1 C2W5T8_BACCE Diaminopimelate decarboxylase 183 4e-45 C3BHZ5.1 C3BHZ5_9BACI Diaminopimelate decarboxylase 181 2e-44 >B3KL52.1 B3KL52_9BACI Diaminopimelate decarboxylase EC=4.1.1.20 Length = 444 Score = 226 bits (577), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 104/121 (85%), Positives = 113/121 (93%) Query: 1 MFLHGTSRINDANHLEIGGCDVTELKAEYGTPLYIVDEQLVRRRCREYMEAFTASGLGFQ 60 MFLHGTS+IND HLEIGGCD ++LKA+YGTPLYIVDEQ VR RCREY+EAF ASGL FQ Sbjct: 1 MFLHGTSKINDQGHLEIGGCDTSDLKAQYGTPLYIVDEQSVRNRCREYIEAFKASGLKFQ 60 Query: 61 VAYASKAFSVMAMCRLADEEGLSLDVVSDGELYTALQAGFPAERIHFHGNNKTPDEIEMA 120 VAYASKAF VMAMCRLADEEG+SLDVVSDGELYTALQAGFPA+RIHFHGNNKTP+EIEMA Sbjct: 61 VAYASKAFCVMAMCRLADEEGMSLDVVSDGELYTALQAGFPADRIHFHGNNKTPEEIEMA 120 Query: 121 I 121 + Sbjct: 121 L 121 >B1DJB2.1 B1DJB2_9BACL Diaminopimelate decarboxylase EC=4.1.1.20 Length = 442 Score = 206 bits (524), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 96/121 (79%), Positives = 105/121 (86%) Query: 1 MFLHGTSRINDANHLEIGGCDVTELKAEYGTPLYIVDEQLVRRRCREYMEAFTASGLGFQ 60 M+LHGTS+IN HLEIGG DVT+L EYGTPLYIVDE L+R+R EY+ AF SGL FQ Sbjct: 1 MYLHGTSKINAQGHLEIGGVDVTDLAKEYGTPLYIVDETLIRQRANEYVSAFKESGLKFQ 60 Query: 61 VAYASKAFSVMAMCRLADEEGLSLDVVSDGELYTALQAGFPAERIHFHGNNKTPDEIEMA 120 VAYASKAFSVMAMC +AD+EGLSLDVVSDGELYTALQAGFPA RIHFHGNNKTPDEI MA Sbjct: 61 VAYASKAFSVMAMCAIADQEGLSLDVVSDGELYTALQAGFPAARIHFHGNNKTPDEINMA 120 Query: 121 I 121 + Sbjct: 121 L 121 >C0ZC72.1 C0ZC72_BREBN Diaminopimelate decarboxylase EC=4.1.1.20 Length = 440 Score = 188 bits (477), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 85/121 (70%), Positives = 101/121 (83%) Query: 1 MFLHGTSRINDANHLEIGGCDVTELKAEYGTPLYIVDEQLVRRRCREYMEAFTASGLGFQ 60 M+LHGTSR+N+ +LEIGGCD T+L A YGTPLY+ DEQ +R +CRE++ AF +G FQ Sbjct: 1 MYLHGTSRVNEQGNLEIGGCDSTQLAATYGTPLYVYDEQQIRTKCREFVNAFHNTGFSFQ 60 Query: 61 VAYASKAFSVMAMCRLADEEGLSLDVVSDGELYTALQAGFPAERIHFHGNNKTPDEIEMA 120 VAYASKAF MAMC+L +EEGLSLDVVS GELYTALQAGFP ERIHFHGNNK+ DE+ MA Sbjct: 61 VAYASKAFCTMAMCKLVEEEGLSLDVVSGGELYTALQAGFPVERIHFHGNNKSYDELIMA 120 Query: 121 I 121 + Sbjct: 121 L 121 >C2W5T8.1 C2W5T8_BACCE Diaminopimelate decarboxylase Length = 449 Score = 183 bits (465), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 84/121 (69%), Positives = 96/121 (79%) Query: 1 MFLHGTSRINDANHLEIGGCDVTELKAEYGTPLYIVDEQLVRRRCREYMEAFTASGLGFQ 60 M+LHGTSRIND HLEIGGCD T+L +YGTPLY+ DE +R +CR + AF SG +Q Sbjct: 12 MYLHGTSRINDQGHLEIGGCDTTQLAKQYGTPLYVYDETAIREKCRAFHRAFQESGFSYQ 71 Query: 61 VAYASKAFSVMAMCRLADEEGLSLDVVSDGELYTALQAGFPAERIHFHGNNKTPDEIEMA 120 VAYASKAF M MCR+A EE +SLDVVS GELYTALQAGFPA RIHFHGNNKT +EI MA Sbjct: 72 VAYASKAFLCMEMCRVAREENMSLDVVSGGELYTALQAGFPASRIHFHGNNKTEEEIVMA 131 Query: 121 I 121 + Sbjct: 132 L 132 >C3BHZ5.1 C3BHZ5_9BACI Diaminopimelate decarboxylase Length = 449 Score = 181 bits (459), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 83/121 (68%), Positives = 96/121 (79%) Query: 1 MFLHGTSRINDANHLEIGGCDVTELKAEYGTPLYIVDEQLVRRRCREYMEAFTASGLGFQ 60 M+LHGTSRIN+ HLEIGGCD T+L +YGTPLY+ DE +R +CR + AF SG +Q Sbjct: 12 MYLHGTSRINEQGHLEIGGCDTTQLAKQYGTPLYVYDEASIREKCRAFHRAFQESGFSYQ 71 Query: 61 VAYASKAFSVMAMCRLADEEGLSLDVVSDGELYTALQAGFPAERIHFHGNNKTPDEIEMA 120 VAYASKAF M MCR+A EE +SLDVVS GELYTALQAGFPA RIHFHGNNKT +EI MA Sbjct: 72 VAYASKAFLCMEMCRVAREENMSLDVVSGGELYTALQAGFPASRIHFHGNNKTEEEIVMA 131 Query: 121 I 121 + Sbjct: 132 L 132 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.135 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 716,151,506 Number of extensions: 24840960 Number of successful extensions: 63433 Number of sequences better than 1.0e-05: 887 Number of HSP's gapped: 63335 Number of HSP's successfully gapped: 887 Length of query: 127 Length of database: 3,060,696,203 Length adjustment: 92 Effective length of query: 35 Effective length of database: 2,193,962,823 Effective search space: 76788698805 Effective search space used: 76788698805 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)