BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0212.0009.p (311 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KL52.1 B3KL52_9BACI Diaminopimelate decarboxylase EC=4.1.1.20 501 e-140 B1DJB2.1 B1DJB2_9BACL Diaminopimelate decarboxylase EC=4.1.1.20 447 e-124 B3ZGE0.1 B3ZGE0_BACCE Diaminopimelate decarboxylase EC=4.1.1.20 394 e-108 A0RBN1.1 A0RBN1_BACAH Diaminopimelate decarboxylase EC=4.1.1.20 393 e-108 Q81T51.1 Q81T51_BACAN Diaminopimelate decarboxylase EC=4.1.1.20 393 e-107 >B3KL52.1 B3KL52_9BACI Diaminopimelate decarboxylase EC=4.1.1.20 Length = 444 Score = 501 bits (1290), Expect = e-140, Method: Compositional matrix adjust. Identities = 240/309 (77%), Positives = 267/309 (86%), Gaps = 1/309 (0%) Query: 1 VELHMLQAIALRKEVTVNILLRVTPGVEAHAHHAYASTGQTDSKFGFDIGNGXXXXXXXX 60 +ELHMLQAIA K VNILLRVTPGVEAH H Y STGQTDSKFGFDIGNG Sbjct: 134 IELHMLQAIAAEKNRKVNILLRVTPGVEAHTHE-YISTGQTDSKFGFDIGNGSAYEAVQL 192 Query: 61 XXXQSNLQLLGVHSHIGSQIFETEGFELAVERIAGFTRKVKEELGVEFPVVNLGGGFGIR 120 Q+N+ L+G+HSHIGSQIFE EGF++AV+R+A F VKE LGV F VVNLGGGFGIR Sbjct: 193 AEAQANIHLMGIHSHIGSQIFEVEGFQMAVQRVAEFAASVKEGLGVVFKVVNLGGGFGIR 252 Query: 121 YVEGDTPLQVSEYVAAITGAVKTHFTGISEKLPQIWVEPGRSIVGDAGTTLYTVGTNKEI 180 YV+GDTPLQVS+YV AIT AVK HF G+ +LP+IWVEPGRSIVGDAGTTLYTVGT+K+I Sbjct: 253 YVDGDTPLQVSQYVKAITDAVKNHFAGLGSELPEIWVEPGRSIVGDAGTTLYTVGTSKDI 312 Query: 181 PGVRKYVAVDGGMTDNPRPALYESKYEALLANRAAEPNEETVSIAGKCCESGDMLIWDVE 240 PGVRKYVAVDGGMTDNPRPALYESKYEALLANRA E EETVSIAGKCCESGDMLIWD+E Sbjct: 313 PGVRKYVAVDGGMTDNPRPALYESKYEALLANRAKEEPEETVSIAGKCCESGDMLIWDLE 372 Query: 241 LPKVESGDLLAVACTGAYNYSMASNYNRIRRPAVVFVQNGQSDLVVRRESHQDIIANDIV 300 LPKVE+GDLLAV+CTGAYNYSMASNYNRIR+PAVVFV++GQS+LVVRRES DII+ND+V Sbjct: 373 LPKVETGDLLAVSCTGAYNYSMASNYNRIRKPAVVFVKDGQSNLVVRRESLADIISNDVV 432 Query: 301 PARIAKQTV 309 PA + K+TV Sbjct: 433 PAGVTKETV 441 >B1DJB2.1 B1DJB2_9BACL Diaminopimelate decarboxylase EC=4.1.1.20 Length = 442 Score = 447 bits (1150), Expect = e-124, Method: Compositional matrix adjust. Identities = 211/306 (68%), Positives = 251/306 (82%), Gaps = 1/306 (0%) Query: 1 VELHMLQAIALRKEVTVNILLRVTPGVEAHAHHAYASTGQTDSKFGFDIGNGXXXXXXXX 60 VEL ML A+A K V IL R+TPGVEAH H Y STGQ DSKFGFD+GNG Sbjct: 134 VELRMLNALAADKGKKVKILFRITPGVEAHTHE-YISTGQEDSKFGFDLGNGAAKQAIQE 192 Query: 61 XXXQSNLQLLGVHSHIGSQIFETEGFELAVERIAGFTRKVKEELGVEFPVVNLGGGFGIR 120 SNL++LGVHSHIGSQIFE +GF +AV+++ F ++++ELG+ F V+NLGGGFGIR Sbjct: 193 ALELSNLEILGVHSHIGSQIFEVDGFRMAVDKVVAFAVQIRDELGLTFKVINLGGGFGIR 252 Query: 121 YVEGDTPLQVSEYVAAITGAVKTHFTGISEKLPQIWVEPGRSIVGDAGTTLYTVGTNKEI 180 YVEGDTPL V++YVAAIT AV ++F+ LP+IWVEPGRSIVGDAGTTLYTVGT K+I Sbjct: 253 YVEGDTPLPVAQYVAAITDAVISNFSAAEFPLPEIWVEPGRSIVGDAGTTLYTVGTMKDI 312 Query: 181 PGVRKYVAVDGGMTDNPRPALYESKYEALLANRAAEPNEETVSIAGKCCESGDMLIWDVE 240 PGVRKY+AVDGGM DNPRPALY+S+YEA+LANRA E N ETV+IAGK CESGD LI D+E Sbjct: 313 PGVRKYIAVDGGMMDNPRPALYQSQYEAILANRANEANTETVTIAGKACESGDKLIIDLE 372 Query: 241 LPKVESGDLLAVACTGAYNYSMASNYNRIRRPAVVFVQNGQSDLVVRRESHQDIIANDIV 300 LPK E+GDLLAV+CTGAYNYSMASNYNR RRPAVVFV++GQSDLVV+RES ++I+ ND++ Sbjct: 373 LPKAETGDLLAVSCTGAYNYSMASNYNRFRRPAVVFVKDGQSDLVVQRESLENIVGNDVI 432 Query: 301 PARIAK 306 PAR+ K Sbjct: 433 PARLLK 438 >B3ZGE0.1 B3ZGE0_BACCE Diaminopimelate decarboxylase EC=4.1.1.20 Length = 438 Score = 394 bits (1011), Expect = e-108, Method: Compositional matrix adjust. Identities = 188/298 (63%), Positives = 228/298 (76%), Gaps = 1/298 (0%) Query: 1 VELHMLQAIALRKEVTVNILLRVTPGVEAHAHHAYASTGQTDSKFGFDIGNGXXXXXXXX 60 +EL +L +A++ VNIL+RVTPGVEAH H Y +TGQ DSKFGF + NG Sbjct: 134 LELEILHDLAVQNGKFVNILIRVTPGVEAHTHE-YITTGQDDSKFGFGVSNGQAMQAIEL 192 Query: 61 XXXQSNLQLLGVHSHIGSQIFETEGFELAVERIAGFTRKVKEELGVEFPVVNLGGGFGIR 120 +SN +LG+HSHIGSQIFET GF A+E + F +V+E V+N+GGGFGIR Sbjct: 193 ALQKSNYNVLGIHSHIGSQIFETAGFVRAIEVLHQFLEEVRERTNYVVKVLNVGGGFGIR 252 Query: 121 YVEGDTPLQVSEYVAAITGAVKTHFTGISEKLPQIWVEPGRSIVGDAGTTLYTVGTNKEI 180 Y E DTPL + YV A+T AV+ FT + LP+IWVEPGRSIVGDAGTTLYTVG+ K+I Sbjct: 253 YTESDTPLTLETYVRAVTSAVREQFTVCNYPLPEIWVEPGRSIVGDAGTTLYTVGSVKDI 312 Query: 181 PGVRKYVAVDGGMTDNPRPALYESKYEALLANRAAEPNEETVSIAGKCCESGDMLIWDVE 240 PG+RKYV+VDGGMTDN RPALY ++YEA+LANR + NEETVSIAGKCCESGDMLIWD+ Sbjct: 313 PGIRKYVSVDGGMTDNLRPALYNARYEAMLANRGNDENEETVSIAGKCCESGDMLIWDIT 372 Query: 241 LPKVESGDLLAVACTGAYNYSMASNYNRIRRPAVVFVQNGQSDLVVRRESHQDIIAND 298 LPKV S DLLA++CTGAY YSMA+NYNRIRRPAVVFV+ G S +VV RE++++II ND Sbjct: 373 LPKVASADLLAISCTGAYGYSMANNYNRIRRPAVVFVKGGTSQIVVERETYENIIGND 430 >A0RBN1.1 A0RBN1_BACAH Diaminopimelate decarboxylase EC=4.1.1.20 Length = 449 Score = 393 bits (1010), Expect = e-108, Method: Compositional matrix adjust. Identities = 188/298 (63%), Positives = 228/298 (76%), Gaps = 1/298 (0%) Query: 1 VELHMLQAIALRKEVTVNILLRVTPGVEAHAHHAYASTGQTDSKFGFDIGNGXXXXXXXX 60 +EL +L +A++ VNIL+RVTPGVEAH H Y +TGQ DSKFGF + NG Sbjct: 145 LELEILHDLAVQNGKFVNILIRVTPGVEAHTHE-YITTGQDDSKFGFGVSNGQAMQAIEL 203 Query: 61 XXXQSNLQLLGVHSHIGSQIFETEGFELAVERIAGFTRKVKEELGVEFPVVNLGGGFGIR 120 +SN +LG+HSHIGSQIFET GF A+E + F +V+E V+N+GGGFGIR Sbjct: 204 ALQKSNYNVLGIHSHIGSQIFETAGFVRAIEVLHQFLEEVRERTNYVVKVLNVGGGFGIR 263 Query: 121 YVEGDTPLQVSEYVAAITGAVKTHFTGISEKLPQIWVEPGRSIVGDAGTTLYTVGTNKEI 180 Y E DTPL + YV A+T AV+ FT + LP+IWVEPGRSIVGDAGTTLYTVG+ K+I Sbjct: 264 YTESDTPLTLETYVRAVTSAVREQFTVCNYPLPEIWVEPGRSIVGDAGTTLYTVGSVKDI 323 Query: 181 PGVRKYVAVDGGMTDNPRPALYESKYEALLANRAAEPNEETVSIAGKCCESGDMLIWDVE 240 PG+RKYV+VDGGMTDN RPALY ++YEA+LANR + NEETVSIAGKCCESGDMLIWD+ Sbjct: 324 PGIRKYVSVDGGMTDNLRPALYNARYEAMLANRGNDENEETVSIAGKCCESGDMLIWDIT 383 Query: 241 LPKVESGDLLAVACTGAYNYSMASNYNRIRRPAVVFVQNGQSDLVVRRESHQDIIAND 298 LPKV S DLLA++CTGAY YSMA+NYNRIRRPAVVFV+ G S +VV RE++++II ND Sbjct: 384 LPKVASADLLAISCTGAYGYSMANNYNRIRRPAVVFVKGGTSQIVVERETYENIIGND 441 >Q81T51.1 Q81T51_BACAN Diaminopimelate decarboxylase EC=4.1.1.20 Length = 438 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 188/298 (63%), Positives = 228/298 (76%), Gaps = 1/298 (0%) Query: 1 VELHMLQAIALRKEVTVNILLRVTPGVEAHAHHAYASTGQTDSKFGFDIGNGXXXXXXXX 60 +EL +L +A++ VNIL+RVTPGVEAH H Y +TGQ DSKFGF + NG Sbjct: 134 LELEILHDLAVQHGKFVNILIRVTPGVEAHTHE-YITTGQDDSKFGFGVSNGQAMQAIEL 192 Query: 61 XXXQSNLQLLGVHSHIGSQIFETEGFELAVERIAGFTRKVKEELGVEFPVVNLGGGFGIR 120 +SN +LG+HSHIGSQIFET GF A+E + F +V+E V+N+GGGFGIR Sbjct: 193 ALQKSNYNVLGIHSHIGSQIFETAGFVRAIEVLHQFLEEVRERTNYVVKVLNVGGGFGIR 252 Query: 121 YVEGDTPLQVSEYVAAITGAVKTHFTGISEKLPQIWVEPGRSIVGDAGTTLYTVGTNKEI 180 Y E DTPL + YV A+T AV+ FT + LP+IWVEPGRSIVGDAGTTLYTVG+ K+I Sbjct: 253 YTESDTPLTLETYVRAVTSAVREQFTVCNYPLPEIWVEPGRSIVGDAGTTLYTVGSVKDI 312 Query: 181 PGVRKYVAVDGGMTDNPRPALYESKYEALLANRAAEPNEETVSIAGKCCESGDMLIWDVE 240 PG+RKYV+VDGGMTDN RPALY ++YEA+LANR + NEETVSIAGKCCESGDMLIWD+ Sbjct: 313 PGIRKYVSVDGGMTDNLRPALYNARYEAMLANRGNDENEETVSIAGKCCESGDMLIWDIT 372 Query: 241 LPKVESGDLLAVACTGAYNYSMASNYNRIRRPAVVFVQNGQSDLVVRRESHQDIIAND 298 LPKV S DLLA++CTGAY YSMA+NYNRIRRPAVVFV+ G S +VV RE++++II ND Sbjct: 373 LPKVASADLLAISCTGAYGYSMANNYNRIRRPAVVFVKGGTSQIVVERETYENIIGND 430 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.135 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,816,072,395 Number of extensions: 76155265 Number of successful extensions: 166348 Number of sequences better than 1.0e-05: 1946 Number of HSP's gapped: 160687 Number of HSP's successfully gapped: 1946 Length of query: 311 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 176 Effective length of database: 1,788,859,178 Effective search space: 314839215328 Effective search space used: 314839215328 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)