BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0212.0008.p (143 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KL53.1 B3KL53_9BACI Peptidyl-prolyl cis-trans isomerase EC=5.2... 224 3e-57 B1DJB1.1 B1DJB1_9BACL Peptidyl-prolyl cis-trans isomerase EC=5.2... 219 6e-56 Q12VY4.1 Q12VY4_METBU Peptidylprolyl isomerase EC=5.2.1.8 175 1e-42 C1TI73.1 C1TI73_9FIRM Peptidyl-prolyl cis-trans isomerase (Rotam... 173 6e-42 B1I4A6.1 B1I4A6_DESAP Peptidyl-prolyl cis-trans isomerase EC=5.2... 169 8e-41 >B3KL53.1 B3KL53_9BACI Peptidyl-prolyl cis-trans isomerase EC=5.2.1.8 Length = 143 Score = 224 bits (570), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 110/143 (76%), Positives = 119/143 (83%) Query: 1 MAKQAKITLENGGVVLLDLFEKDAPNTVANFEKLAKEGFYNGLVFHRVIPGFVAQXXXXX 60 MAK+AKITLENG V+LDLFE DAPNTVANFEKLA GFYNGLVFHRVIPGFVAQ Sbjct: 1 MAKKAKITLENGKEVVLDLFENDAPNTVANFEKLANSGFYNGLVFHRVIPGFVAQGGCPQ 60 Query: 61 XXXXXXXXYTIDCEINPNKHERGTLAMAHAGKNTGGSQFYICYAPQPHLDGVHTVFGKVV 120 YTI+CEINPNKHERG+LAMAHAG+NTGGSQFY+CY PQPHLDG HTVFGKVV Sbjct: 61 GTGTGGPGYTINCEINPNKHERGSLAMAHAGRNTGGSQFYVCYEPQPHLDGQHTVFGKVV 120 Query: 121 EGMDKVDAFQGRDKMTSVEIIEA 143 EGM+ VDAF+GRDKM VE+ EA Sbjct: 121 EGMEYVDAFKGRDKMEKVEVYEA 143 >B1DJB1.1 B1DJB1_9BACL Peptidyl-prolyl cis-trans isomerase EC=5.2.1.8 Length = 143 Score = 219 bits (558), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 108/142 (76%), Positives = 118/142 (83%) Query: 1 MAKQAKITLENGGVVLLDLFEKDAPNTVANFEKLAKEGFYNGLVFHRVIPGFVAQXXXXX 60 MAKQAKITLENG V+LDLFE+DAPNTVANFEKLA EGFYNG+VFHRVIPGFVAQ Sbjct: 1 MAKQAKITLENGAEVILDLFEQDAPNTVANFEKLANEGFYNGVVFHRVIPGFVAQGGCPN 60 Query: 61 XXXXXXXXYTIDCEINPNKHERGTLAMAHAGKNTGGSQFYICYAPQPHLDGVHTVFGKVV 120 YTI+CEINPNKHERG+LAMAHAG+NTGGSQFYI Y PQPHLDG HTVFGKV Sbjct: 61 GTGTGGPGYTINCEINPNKHERGSLAMAHAGRNTGGSQFYIGYQPQPHLDGQHTVFGKVA 120 Query: 121 EGMDKVDAFQGRDKMTSVEIIE 142 +GM+ VDAF+GRDKM VE+ E Sbjct: 121 KGMEHVDAFKGRDKMQKVEVYE 142 >Q12VY4.1 Q12VY4_METBU Peptidylprolyl isomerase EC=5.2.1.8 Length = 141 Score = 175 bits (443), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 82/132 (62%), Positives = 98/132 (74%) Query: 11 NGGVVLLDLFEKDAPNTVANFEKLAKEGFYNGLVFHRVIPGFVAQXXXXXXXXXXXXXYT 70 N G ++L+LFEKDAP TVANFEKL K+GFYNGL FHRVI F+ Q Y+ Sbjct: 9 NKGTIVLELFEKDAPKTVANFEKLIKQGFYNGLTFHRVISNFMIQAGCPKGNGTGGPGYS 68 Query: 71 IDCEINPNKHERGTLAMAHAGKNTGGSQFYICYAPQPHLDGVHTVFGKVVEGMDKVDAFQ 130 I CEINP KH +G L+MAHAGKNTGGSQF+I ++PQPHLDGVHTVFGKV+EGMD V+A + Sbjct: 69 IKCEINPKKHTKGALSMAHAGKNTGGSQFFITHSPQPHLDGVHTVFGKVIEGMDVVNAIK 128 Query: 131 GRDKMTSVEIIE 142 D MT + + E Sbjct: 129 QSDVMTKLTVEE 140 >C1TI73.1 C1TI73_9FIRM Peptidyl-prolyl cis-trans isomerase (Rotamase)-cyclophilin family Length = 144 Score = 173 bits (438), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 87/140 (62%), Positives = 103/140 (73%), Gaps = 1/140 (0%) Query: 3 KQAKITLENGGVVLLDLFEKDAPNTVANFEKLAKEGFYNGLVFHRVIPGFVAQXXXXXXX 62 K+A I E G VVL +LF+KDAPNTVANFEKL +GFY+GL FHRVIPGFV Q Sbjct: 5 KKAVIETEKGNVVL-ELFDKDAPNTVANFEKLIGQGFYDGLNFHRVIPGFVIQGGCPRGN 63 Query: 63 XXXXXXYTIDCEINPNKHERGTLAMAHAGKNTGGSQFYICYAPQPHLDGVHTVFGKVVEG 122 YTI CEINPNKH RG L+MAHAG++TGGSQF+IC+ PHLDGVHTVFGKV++G Sbjct: 64 GTGGPGYTIKCEINPNKHVRGALSMAHAGRDTGGSQFFICHDAFPHLDGVHTVFGKVIDG 123 Query: 123 MDKVDAFQGRDKMTSVEIIE 142 ++ VD + DKM V I+E Sbjct: 124 LEVVDKIEQGDKMNKVTIVE 143 >B1I4A6.1 B1I4A6_DESAP Peptidyl-prolyl cis-trans isomerase EC=5.2.1.8 Length = 141 Score = 169 bits (428), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 84/139 (60%), Positives = 100/139 (71%), Gaps = 1/139 (0%) Query: 4 QAKITLENGGVVLLDLFEKDAPNTVANFEKLAKEGFYNGLVFHRVIPGFVAQXXXXXXXX 63 +A I E G +V+ +LFEK+APNTVANF KL K+GFY+GL FHRVIPGFV Q Sbjct: 3 KAVIQTEKGKIVV-ELFEKEAPNTVANFTKLIKQGFYDGLTFHRVIPGFVIQGGCPKGNG 61 Query: 64 XXXXXYTIDCEINPNKHERGTLAMAHAGKNTGGSQFYICYAPQPHLDGVHTVFGKVVEGM 123 YTI CEINP KH RG L+MAHAG+NTGGSQF+IC+ PHLDGVHTVFG+V+EG Sbjct: 62 TGGPGYTIKCEINPKKHVRGALSMAHAGRNTGGSQFFICHDAFPHLDGVHTVFGQVIEGQ 121 Query: 124 DKVDAFQGRDKMTSVEIIE 142 D VD + D+MT V + E Sbjct: 122 DMVDRIKQGDRMTRVTVEE 140 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.138 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 794,585,022 Number of extensions: 28634595 Number of successful extensions: 64139 Number of sequences better than 1.0e-05: 3909 Number of HSP's gapped: 60031 Number of HSP's successfully gapped: 3913 Length of query: 143 Length of database: 3,060,696,203 Length adjustment: 106 Effective length of query: 37 Effective length of database: 2,062,068,613 Effective search space: 76296538681 Effective search space used: 76296538681 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)