BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0212.0005.p (466 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C4ZF67.1 C4ZF67_9FIRM Putative recombinase 532 e-149 C4Z9C8.1 C4Z9C8_9FIRM Putative reverse transcriptasematurase of ... 531 e-149 C4ZF93.1 C4ZF93_9FIRM RNA-directed DNA polymerase 527 e-148 C4ZCX5.1 C4ZCX5_9FIRM RNA-directed DNA polymerase 527 e-147 B0NYG1.1 B0NYG1_9CLOT Putative uncharacterized protein 526 e-147 >C4ZF67.1 C4ZF67_9FIRM Putative recombinase Length = 464 Score = 532 bits (1371), Expect = e-149, Method: Compositional matrix adjust. Identities = 264/453 (58%), Positives = 332/453 (73%), Gaps = 2/453 (0%) Query: 8 GYPQRDNVERDEYXXXXXXXXXX-XXXXXXXTDLLEQILNRDNLNRAYKQVKRNHGAPGI 66 G QRDN E + Y LLE IL +DN NRAYK+VK N GAPGI Sbjct: 9 GCSQRDNAEHEGYVKASRSFNRIWKERDSAQPRLLETILYKDNFNRAYKRVKANKGAPGI 68 Query: 67 DGMTVEDALSWLQEHKGELLQSIREGRYKPSPVRRKEIPKPDGSGVRKLGIPTVIDRVIQ 126 DGMT+E+AL +L+EH+ E+ I G+Y PSPVRR EIPKPDG GVRKLGIPTVIDR +Q Sbjct: 69 DGMTIEEALPYLKEHQQEITDRIYRGKYTPSPVRRVEIPKPDG-GVRKLGIPTVIDRTLQ 127 Query: 127 QAISQQLQPLFERLFSDGSYGYRPERSAQQAIRKVREYAQQGYGYAVEIDLSKYFDTLNH 186 QAI+QQL P++E LF+DGSYGYRP RSA+ AI KV+EYA+QGY +AV +DLSKYFDTLNH Sbjct: 128 QAITQQLVPIYEPLFADGSYGYRPNRSAKDAILKVKEYAEQGYTFAVVLDLSKYFDTLNH 187 Query: 187 ELLMNLLRKQIQDHRVTDLIKKYLKSGVMENGVHCKTEEGSPQGGPLSPLLANIYLNEFD 246 E+L+NLLRK ++D RV LIK+YLKSGVMENGV TEEGSPQGG LSPLLANIYLNEFD Sbjct: 188 EILINLLRKNVKDERVVQLIKRYLKSGVMENGVVIDTEEGSPQGGNLSPLLANIYLNEFD 247 Query: 247 QEMSSRGVKVIRYADDIVVLAKSKRAATRLLESCRKYLENKLRLQVNAQKSKVVSVVARK 306 QE RGV IRYADDIV+LAKSKRA+ RLLES KYLE +L+L VN +KS+ VSV A + Sbjct: 248 QEYLKRGVPCIRYADDIVLLAKSKRASERLLESSTKYLEERLKLTVNREKSRTVSVFAIR 307 Query: 307 HFKFLGFALGKNGNGVYIRAHGQSXXXXXXXXXELTSRSQGRNVPQVMEKVKVYIRGWIG 366 +FKFLGFALG+NG G+Y+R H +S EL+SR + +++ +EK+KVY RGW+ Sbjct: 308 NFKFLGFALGRNGKGIYVRVHPKSWKKFKSRLKELSSRKRCQSIKPSLEKIKVYARGWLN 367 Query: 367 YFYVADIKRILQSWSEWLRRRLRMYIWKQWKKPKTKVQNLRKLGIPEWQAYQWGNSRLGY 426 Y+ +A +K + + WL R+RM IWKQWKKP+TKV+NL K+G+P+ A Q GN+R G+ Sbjct: 368 YYGIASMKNNIDDINGWLYHRIRMCIWKQWKKPRTKVRNLIKMGVPKDLAMQAGNTRRGH 427 Query: 427 WRVAGSPVLSRSITNEKLAQAGYYDFPAQYEQL 459 W + ++ ++T E+L +G+YD Y+ + Sbjct: 428 WFATHTVAVNMAMTKERLINSGFYDLATAYQSV 460 >C4Z9C8.1 C4Z9C8_9FIRM Putative reverse transcriptasematurase of intron Length = 464 Score = 531 bits (1369), Expect = e-149, Method: Compositional matrix adjust. Identities = 264/453 (58%), Positives = 332/453 (73%), Gaps = 2/453 (0%) Query: 8 GYPQRDNVERDEYXXXXXXXXXX-XXXXXXXTDLLEQILNRDNLNRAYKQVKRNHGAPGI 66 G QRDN E + Y LLE IL +DN NRAYK+VK N GAPGI Sbjct: 9 GCSQRDNAEHEGYVKASRSFNRIWKERDSAQPRLLETILYKDNFNRAYKRVKANKGAPGI 68 Query: 67 DGMTVEDALSWLQEHKGELLQSIREGRYKPSPVRRKEIPKPDGSGVRKLGIPTVIDRVIQ 126 DGMT+E+AL +L+EH+ E+ I G+Y PSPVRR EIPKPDG GVRKLGIPTVIDR +Q Sbjct: 69 DGMTIEEALPYLKEHQQEITDRIYRGKYTPSPVRRVEIPKPDG-GVRKLGIPTVIDRTLQ 127 Query: 127 QAISQQLQPLFERLFSDGSYGYRPERSAQQAIRKVREYAQQGYGYAVEIDLSKYFDTLNH 186 QAI+QQL P++E LF+DGSYGYRP RSA+ AI KV+EYA+QGY +AV +DLSKYFDTLNH Sbjct: 128 QAITQQLVPIYEPLFADGSYGYRPNRSAKDAILKVKEYAEQGYTFAVVLDLSKYFDTLNH 187 Query: 187 ELLMNLLRKQIQDHRVTDLIKKYLKSGVMENGVHCKTEEGSPQGGPLSPLLANIYLNEFD 246 E+L+NLLRK ++D RV LIK+YLKSGVMENGV TEEGSPQGG LSPLLANIYLNEFD Sbjct: 188 EILINLLRKNVKDERVVQLIKRYLKSGVMENGVVIDTEEGSPQGGNLSPLLANIYLNEFD 247 Query: 247 QEMSSRGVKVIRYADDIVVLAKSKRAATRLLESCRKYLENKLRLQVNAQKSKVVSVVARK 306 QE RGV IRYADDIV+LAKSKRA+ RLLES KYLE +L+L VN +KS+ VSV A + Sbjct: 248 QEYLKRGVPCIRYADDIVLLAKSKRASERLLESSTKYLEERLKLTVNREKSRTVSVFAIR 307 Query: 307 HFKFLGFALGKNGNGVYIRAHGQSXXXXXXXXXELTSRSQGRNVPQVMEKVKVYIRGWIG 366 +FKFLGFALG+NG G+Y+R H +S EL+SR + +++ +EK+KVY RGW+ Sbjct: 308 NFKFLGFALGRNGEGIYVRVHPKSWKKFKSRLKELSSRKRCQSIKPNLEKIKVYARGWLN 367 Query: 367 YFYVADIKRILQSWSEWLRRRLRMYIWKQWKKPKTKVQNLRKLGIPEWQAYQWGNSRLGY 426 Y+ +A +K + + WL R+RM IWKQWKKP+TKV+NL K+G+P+ A Q GN+R G+ Sbjct: 368 YYGIASMKNNIDEINGWLYHRIRMCIWKQWKKPRTKVRNLIKMGVPKDLAMQAGNTRRGH 427 Query: 427 WRVAGSPVLSRSITNEKLAQAGYYDFPAQYEQL 459 W + ++ ++T E+L +G+YD Y+ + Sbjct: 428 WFATHTVAVNMAMTKERLINSGFYDLATAYQSV 460 >C4ZF93.1 C4ZF93_9FIRM RNA-directed DNA polymerase Length = 464 Score = 527 bits (1358), Expect = e-148, Method: Compositional matrix adjust. Identities = 264/453 (58%), Positives = 328/453 (72%), Gaps = 2/453 (0%) Query: 8 GYPQRDNVERDEYXXXXXXXXXX-XXXXXXXTDLLEQILNRDNLNRAYKQVKRNHGAPGI 66 G QRDN E + Y LLE IL +DN NRAYK+VK N GAPGI Sbjct: 9 GCSQRDNAEHEGYVKASRSFNRIWKERDSAQPRLLETILYKDNFNRAYKRVKANKGAPGI 68 Query: 67 DGMTVEDALSWLQEHKGELLQSIREGRYKPSPVRRKEIPKPDGSGVRKLGIPTVIDRVIQ 126 DGMT+E+AL +L+EH+ E+ I G+Y PSPVRR EIPKPDG GVRKLGIPTVIDR +Q Sbjct: 69 DGMTIEEALPYLKEHQQEITDRIYRGKYTPSPVRRVEIPKPDG-GVRKLGIPTVIDRTLQ 127 Query: 127 QAISQQLQPLFERLFSDGSYGYRPERSAQQAIRKVREYAQQGYGYAVEIDLSKYFDTLNH 186 QAI+QQL P++E LF+DGSYGYRP RSA+ AI KV+EYA+QGY +AV +DLSKYFDTLNH Sbjct: 128 QAITQQLVPIYEPLFADGSYGYRPNRSAKDAILKVKEYAEQGYTFAVVLDLSKYFDTLNH 187 Query: 187 ELLMNLLRKQIQDHRVTDLIKKYLKSGVMENGVHCKTEEGSPQGGPLSPLLANIYLNEFD 246 E+L+NLLRK ++D RV LIK+YLKSGVMENGV TEEGSPQGG LSPLLANIYLNEFD Sbjct: 188 EILINLLRKNVKDERVVQLIKRYLKSGVMENGVVIDTEEGSPQGGNLSPLLANIYLNEFD 247 Query: 247 QEMSSRGVKVIRYADDIVVLAKSKRAATRLLESCRKYLENKLRLQVNAQKSKVVSVVARK 306 QE RGV IRYADDIV+LAKSKRA+ RLLES KYLE +L+L VN +KS+ VSV A + Sbjct: 248 QEYLKRGVPCIRYADDIVLLAKSKRASERLLESSTKYLEERLKLTVNREKSRTVSVFAIR 307 Query: 307 HFKFLGFALGKNGNGVYIRAHGQSXXXXXXXXXELTSRSQGRNVPQVMEKVKVYIRGWIG 366 +FKFLGFALG+NG G+Y+R H +S EL+SR + +++ +EK+KVY RGW+ Sbjct: 308 NFKFLGFALGRNGKGIYVRVHPKSWKKFKSRLKELSSRKRCQSIKPSLEKIKVYARGWLN 367 Query: 367 YFYVADIKRILQSWSEWLRRRLRMYIWKQWKKPKTKVQNLRKLGIPEWQAYQWGNSRLGY 426 Y+ +A +K + + WL R+RM IWKQWKKP+TK +NL KLGIPE A NSR Y Sbjct: 368 YYGIASMKNNIDDINGWLYHRIRMCIWKQWKKPRTKYKNLVKLGIPEHYAATIANSRRKY 427 Query: 427 WRVAGSPVLSRSITNEKLAQAGYYDFPAQYEQL 459 W ++ + + ++ E+L +G+YD Y+ + Sbjct: 428 WYISNNKAVIWALNKERLINSGFYDLATAYQSV 460 >C4ZCX5.1 C4ZCX5_9FIRM RNA-directed DNA polymerase Length = 464 Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust. Identities = 264/453 (58%), Positives = 328/453 (72%), Gaps = 2/453 (0%) Query: 8 GYPQRDNVERDEYXXXXXXXXXX-XXXXXXXTDLLEQILNRDNLNRAYKQVKRNHGAPGI 66 G QRDN E + Y LLE IL +DN NRAYK+VK N GAPGI Sbjct: 9 GCSQRDNAEHEGYVKASRSFNRIWKERDSAQPRLLETILYKDNFNRAYKRVKANKGAPGI 68 Query: 67 DGMTVEDALSWLQEHKGELLQSIREGRYKPSPVRRKEIPKPDGSGVRKLGIPTVIDRVIQ 126 DGMT+E+AL +L+EH+ E+ I G+Y PSPVRR EIPKPDG GVRKLGIPTVIDR +Q Sbjct: 69 DGMTIEEALPYLKEHQQEITDRIYRGKYTPSPVRRVEIPKPDG-GVRKLGIPTVIDRTLQ 127 Query: 127 QAISQQLQPLFERLFSDGSYGYRPERSAQQAIRKVREYAQQGYGYAVEIDLSKYFDTLNH 186 QAI+QQL P++E LF+DGSYGYRP RSA+ AI KV+EYA+QGY +AV +DLSKYFDTLNH Sbjct: 128 QAITQQLVPIYEPLFADGSYGYRPNRSAKDAILKVKEYAEQGYTFAVVLDLSKYFDTLNH 187 Query: 187 ELLMNLLRKQIQDHRVTDLIKKYLKSGVMENGVHCKTEEGSPQGGPLSPLLANIYLNEFD 246 E+L+NLLRK ++D RV LIK+YLKSGVMENGV TEEGSPQGG LSPLLANIYLNEFD Sbjct: 188 EILINLLRKNVKDERVVQLIKRYLKSGVMENGVVIDTEEGSPQGGNLSPLLANIYLNEFD 247 Query: 247 QEMSSRGVKVIRYADDIVVLAKSKRAATRLLESCRKYLENKLRLQVNAQKSKVVSVVARK 306 QE RGV IRYADDIV+LAKSKRA+ RLLES KYLE +L+L VN +KS+ VSV A + Sbjct: 248 QEYLKRGVPCIRYADDIVLLAKSKRASERLLESSTKYLEERLKLTVNREKSRTVSVFAIR 307 Query: 307 HFKFLGFALGKNGNGVYIRAHGQSXXXXXXXXXELTSRSQGRNVPQVMEKVKVYIRGWIG 366 +FKFLGFALG+NG G+Y+R H +S EL+SR + +++ +EK+KVY RGW+ Sbjct: 308 NFKFLGFALGRNGKGIYVRVHPKSWKKFKSRLKELSSRKRCQSIKPSLEKIKVYARGWLN 367 Query: 367 YFYVADIKRILQSWSEWLRRRLRMYIWKQWKKPKTKVQNLRKLGIPEWQAYQWGNSRLGY 426 Y+ +A +K + + WL R+RM IWKQWKKP+TK +NL KLGIPE A NSR Y Sbjct: 368 YYGIASMKSNIDDINGWLYHRIRMCIWKQWKKPRTKYKNLVKLGIPEHYASTIANSRRKY 427 Query: 427 WRVAGSPVLSRSITNEKLAQAGYYDFPAQYEQL 459 W ++ + + ++ E+L +G+YD Y+ + Sbjct: 428 WYISNNKAVIWALNKERLINSGFYDLATAYQSV 460 >B0NYG1.1 B0NYG1_9CLOT Putative uncharacterized protein Length = 464 Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust. Identities = 254/420 (60%), Positives = 322/420 (76%), Gaps = 1/420 (0%) Query: 40 LLEQILNRDNLNRAYKQVKRNHGAPGIDGMTVEDALSWLQEHKGELLQSIREGRYKPSPV 99 LLE IL +DN NRAYK+VK N GAPGIDGMT+ +AL +L+EH+ E+ I G+Y PSPV Sbjct: 42 LLEAILYKDNFNRAYKRVKANKGAPGIDGMTIAEALPYLKEHQQEITDRIYRGKYTPSPV 101 Query: 100 RRKEIPKPDGSGVRKLGIPTVIDRVIQQAISQQLQPLFERLFSDGSYGYRPERSAQQAIR 159 RR EIPKPDG GVRKLGIPTV+DR +QQAI+QQL P++E LF++GSYGYRP RSA+ AI Sbjct: 102 RRVEIPKPDG-GVRKLGIPTVVDRTLQQAITQQLVPIYEPLFAEGSYGYRPNRSAKDAIL 160 Query: 160 KVREYAQQGYGYAVEIDLSKYFDTLNHELLMNLLRKQIQDHRVTDLIKKYLKSGVMENGV 219 KV+EYA+QGY +AV +DLSKYFDTLNHE+L+NLLRK I+D RV LIK+YLKSGVMENGV Sbjct: 161 KVKEYAEQGYTFAVVLDLSKYFDTLNHEILINLLRKNIKDERVVQLIKRYLKSGVMENGV 220 Query: 220 HCKTEEGSPQGGPLSPLLANIYLNEFDQEMSSRGVKVIRYADDIVVLAKSKRAATRLLES 279 TEEGSPQGG LSPLLAN+YLNEFDQE RGV IRYADDIV+LAKSKRA+ RLLES Sbjct: 221 VIDTEEGSPQGGNLSPLLANVYLNEFDQEFLKRGVPCIRYADDIVLLAKSKRASERLLES 280 Query: 280 CRKYLENKLRLQVNAQKSKVVSVVARKHFKFLGFALGKNGNGVYIRAHGQSXXXXXXXXX 339 KYLE +L+L VN +KS+ VSV A ++FKFLGFALG+NG G+Y+R H +S Sbjct: 281 STKYLEERLKLTVNREKSRTVSVFAIRNFKFLGFALGRNGKGIYVRVHPKSWKKFKFRLK 340 Query: 340 ELTSRSQGRNVPQVMEKVKVYIRGWIGYFYVADIKRILQSWSEWLRRRLRMYIWKQWKKP 399 EL+SR + +++ +EK+KVY RGW+ Y+ +A +K + + WL R+RM IWKQWKKP Sbjct: 341 ELSSRKRCQSIKPSLEKIKVYARGWLNYYGIASMKNNIDDINGWLYHRIRMCIWKQWKKP 400 Query: 400 KTKVQNLRKLGIPEWQAYQWGNSRLGYWRVAGSPVLSRSITNEKLAQAGYYDFPAQYEQL 459 +TK +NL K+G+PE A Q GN+R G+W + ++ ++T E+L +G+YD Y+ + Sbjct: 401 RTKARNLIKMGVPEDLAMQAGNTRRGHWFATHTVAINMAMTKERLINSGFYDLATAYQSV 460 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.136 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,743,369,572 Number of extensions: 112214671 Number of successful extensions: 269408 Number of sequences better than 1.0e-05: 1770 Number of HSP's gapped: 266238 Number of HSP's successfully gapped: 1779 Length of query: 466 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 327 Effective length of database: 1,751,175,118 Effective search space: 572634263586 Effective search space used: 572634263586 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)