BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0212.0004.p (315 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KHU2.1 B3KHU2_9BACI Copper amine oxidase domain protein 100 2e-19 B3KAU6.1 B3KAU6_9BACI Copper amine oxidase domain protein 100 3e-19 B3KK20.1 B3KK20_9BACI Putative uncharacterized protein 94 2e-17 A3DCG1.1 A3DCG1_CLOTH Copper amine oxidase-like protein 89 4e-16 B5Y9S8.1 B5Y9S8_COPPD Copper amine oxidase N-domain family 89 6e-16 >B3KHU2.1 B3KHU2_9BACI Copper amine oxidase domain protein Length = 308 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 73/241 (30%), Positives = 106/241 (43%), Gaps = 14/241 (5%) Query: 83 WNNASKTVTLTRNGETITLVAGQKTAKVGNKEVKLEAASTLKQGRVMVPLRFIAESTGAY 142 WNN +K T+ + + L K A+ V L A ++ G+ M+PLRF+AE+ Sbjct: 72 WNNTTKQATVKGSDTNLQLTMNNKVAQKNGSPVSLSTAPFIQNGKTMIPLRFVAEALDGS 131 Query: 143 VLWNPKQRIVFVAKSSEEEELKEQFXXXXXXXXXXXXXKFPMVSSLKALDITPSEVGGNQ 202 V WN K + FV+K S +L P VS L D P + Sbjct: 132 VTWNQKTQTAFVSKPS--TKLLTDVKSSALSTARNAAINLPRVSQLTE-DFKPIMEASSL 188 Query: 203 GYYFPEGKADQFFLTGGNSISYYEVVGNHSEKKWTATFDSVKASS--GLFFLPLKITNQD 260 YYFPE D+F N I YY++ N + KW A F S K ++ L+F+ ++ Sbjct: 189 QYYFPENTHDRFIEVNNNVIRYYKITKNTAYLKWQA-FISEKTTTQDNLYFINRAFIKEN 247 Query: 261 GELPKI-TSRVVFFEFMGHVGEAKYGFV--EPNGEV--KTLGTKEMNLNQFF---DIPEE 312 G LP + F +M H+ YG + E +V K + NL + + DIPEE Sbjct: 248 GSLPNFKDTTFANFRWMPHITSTGYGLITKENWNDVVFKQAELPQTNLKENYIIVDIPEE 307 Query: 313 K 313 K Sbjct: 308 K 308 >B3KAU6.1 B3KAU6_9BACI Copper amine oxidase domain protein Length = 308 Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 68/210 (32%), Positives = 104/210 (49%), Gaps = 10/210 (4%) Query: 49 NGIYANMDVAPYITKGTTMVPLQVAQQIPGSSVQWNNASKTVTLTRNGETITLVAGQKTA 108 N + A+ DV I +GTT V L + + ++++N K VT+ + T+ L AG + Sbjct: 40 NNVTASGDV--LIRQGTTFVTLTDLKPLGNYVMKYDNQKKQVTIQGDNRTVILAAGSTSM 97 Query: 109 KVGNKEVKLEAASTLKQGRVMVPLRFIAESTGAYVLWNPKQRIVFVAKSSEEEELKEQFX 168 +V + L AA L G+ ++PLR +A++ A V WN + F+ K+ + ++ Sbjct: 98 EVNGVKKALPAAPLLHNGKTLIPLRAVAQAFDASVYWNGSLKTAFINKA--DPDIIADLK 155 Query: 169 XXXXXXXXXXXXKFPMVSSLKA--LDITPSEVGGNQGYYFPEGKADQFFLTGGNSISYYE 226 K P S LK LD+ P E+ G YYFP+G++ +FFL + SYYE Sbjct: 156 SSDLATARNAAAKLPYSSELKKPELDMLPVEMQGVD-YYFPKGQSQRFFLVDNDIASYYE 214 Query: 227 VVGNHSEKKWTATFD-SVKASSG--LFFLP 253 + G KW D S KA + LFFLP Sbjct: 215 IRGGVKYLKWQGKLDYSAKAPANQKLFFLP 244 >B3KK20.1 B3KK20_9BACI Putative uncharacterized protein Length = 518 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 50/106 (47%), Positives = 69/106 (65%), Gaps = 3/106 (2%) Query: 49 NGIYANMDVAPYITK--GTTMVPLQVAQQIPGSSVQWNNASKTVTLTRNGETITLVAGQK 106 +G+ N DV+PYI TMVP ++ + G+SV WN SKTVT+ ++G ++ L +G+K Sbjct: 36 DGVNLNSDVSPYILPKVNVTMVPTRIISEGLGASVAWNQKSKTVTIGKDGSSLQLTSGKK 95 Query: 107 TAKVGNKEVKLEAASTLKQGRVMVPLRFIAESTGAYVLWN-PKQRI 151 TA V V L+A+ +K GRVMVPLRFI+E+ G V WN QRI Sbjct: 96 TALVNGSSVALDASVEIKNGRVMVPLRFISENLGVQVEWNQAAQRI 141 >A3DCG1.1 A3DCG1_CLOTH Copper amine oxidase-like protein Length = 732 Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 40/103 (38%), Positives = 64/103 (62%) Query: 54 NMDVAPYITKGTTMVPLQVAQQIPGSSVQWNNASKTVTLTRNGETITLVAGQKTAKVGNK 113 +++VAP+I+ G T+VP + + G +V WN+A+KTVT G I L G A V Sbjct: 68 DLEVAPFISNGRTLVPFRAIFEELGYTVDWNDATKTVTAKYKGNEIKLTVGANKAVVNGY 127 Query: 114 EVKLEAASTLKQGRVMVPLRFIAESTGAYVLWNPKQRIVFVAK 156 EV L+ A + R +VPLRF+AE++G++V WNP+ + + + + Sbjct: 128 EVPLDVAPAIVNSRTVVPLRFVAENSGSFVDWNPEDKTISIKR 170 >B5Y9S8.1 B5Y9S8_COPPD Copper amine oxidase N-domain family Length = 630 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 45/104 (43%), Positives = 65/104 (62%) Query: 49 NGIYANMDVAPYITKGTTMVPLQVAQQIPGSSVQWNNASKTVTLTRNGETITLVAGQKTA 108 NG+ MDV+ I TMVP++V + G SVQW+++ K VT+T G +I L G+ TA Sbjct: 522 NGVEKTMDVSATIINSRTMVPIRVISEAFGYSVQWDDSQKKVTITGLGHSIELFNGKPTA 581 Query: 109 KVGNKEVKLEAASTLKQGRVMVPLRFIAESTGAYVLWNPKQRIV 152 V ++++A T+ QG ++VP+RFI ES G VLW+P R V Sbjct: 582 FVDGAPMEIDAPPTIVQGTMLVPVRFIVESMGLNVLWDPNLRKV 625 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.132 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,675,392,742 Number of extensions: 61385307 Number of successful extensions: 109385 Number of sequences better than 1.0e-05: 192 Number of HSP's gapped: 109286 Number of HSP's successfully gapped: 192 Length of query: 315 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 180 Effective length of database: 1,788,859,178 Effective search space: 321994652040 Effective search space used: 321994652040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 131 (55.1 bits)