BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0210.0012.p (497 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D4M7.1 B1D4M7_9BACL Extracellular solute-binding protein family 1 616 e-174 B3K5B1.1 B3K5B1_9BACI Extracellular solute-binding protein family 1 582 e-164 B8I4I4.1 B8I4I4_CLOCE Extracellular solute-binding protein family 1 540 e-152 C0V961.1 C0V961_9MICO Carbohydrate ABC transporter substrate-bin... 430 e-118 Q9KB24.1 Q9KB24_BACHD BH2111 protein 385 e-105 >B1D4M7.1 B1D4M7_9BACL Extracellular solute-binding protein family 1 Length = 573 Score = 616 bits (1589), Expect = e-174, Method: Compositional matrix adjust. Identities = 288/501 (57%), Positives = 375/501 (74%), Gaps = 6/501 (1%) Query: 1 MNGPGQQPTPDNKILKLIKDETGISFNMEFLVGDLQQKLGVMIAGGDYPDILSGDDKLIN 60 + PGQ PT DNK+ K IK++ GI+F EFLVGDL+QKLGVMIAGGDYPD+++ D KL++ Sbjct: 71 IGAPGQSPTSDNKLFKKIKEDLGITFKTEFLVGDLEQKLGVMIAGGDYPDLITADPKLVS 130 Query: 61 AKAYIPLEDLIEKYAPNLKKHYGAVWNQIKDESDGHIYVLPSYGVYQGKITEPTYQGPGF 120 A A IPLEDLIE+YAP LK+HY WN++KD SDGHIY LP+YG YQG + E Y GP F Sbjct: 131 AGAVIPLEDLIEQYAPKLKEHYAKYWNRMKDPSDGHIYWLPNYGAYQGNVNETFYSGPAF 190 Query: 121 WLQKGVLEEMGYPTPKTLDEYFDIIAKYKEKHPDM-----IGFESLNFDWRVFPLQNPPE 175 W+QK VL+E GYP +TLD+Y +I +Y+ K+P++ IGF +L DWR F L N PE Sbjct: 191 WIQKAVLKEFGYPKLQTLDDYMKLIREYQAKYPEIDGQKTIGFTTLASDWRTFGLLNAPE 250 Query: 176 HLSGHPNDGAVIVDNNVAQIFADKDISKTYYKKLNEINAQGLMDKEAFVQNYDQYLAKVA 235 HL+GHPNDG V+VDN VA +FA +DISKTYYK+LN + +GLMDKEAF QNYDQYLAK+ Sbjct: 251 HLTGHPNDGGVVVDNGVASVFATQDISKTYYKELNGLYNEGLMDKEAFTQNYDQYLAKLT 310 Query: 236 SGKVIGMFDQHWNFQDGEKSLISQGKLENTYIGFPLLYPGA-EEWYRDRGAVGTNRGFGI 294 G V+GMFDQHWNFQ E SL +QGK + TY+GFPL+Y + +++YRDR + N GFGI Sbjct: 311 QGNVLGMFDQHWNFQTAEDSLNTQGKSDRTYVGFPLVYDASIKDYYRDRAVINLNNGFGI 370 Query: 295 SINAKDPVRIIKFWDKMITEDWQKTLQWGVKGEDYEVNADGSFYRTPEQRANADQTSWQV 354 S++AKDP RII+ ++++ E +QK WG +G DY+V DG + RTPEQR N + +W++ Sbjct: 371 SVDAKDPKRIIQALEQLMDEKYQKMFTWGEEGVDYQVGTDGKYTRTPEQRKNYEDPAWKL 430 Query: 355 ANKISGMFGYMPKIQGTYSDGNAADAGTQPQEFFDSLKPYDQKILKAYNKKSWSEFFKEP 414 AN G+FGY+PKI+GT SDGNA G P EF+DSLK D+++L AY K+W+EFF +P Sbjct: 431 ANLGDGIFGYLPKIEGTLSDGNATSPGGDPVEFYDSLKDVDKEVLNAYGHKTWTEFFTQP 490 Query: 415 KENNIYFPAYSIVLKDGSPAQLAQSKLNDLQIKYLPKAIMASPAEFDSVWQDYVDRIHKL 474 +N +Y+PA+ I L DGS A +A K+ D +K+LP+AIM+ P +FD VWQDYVD K+ Sbjct: 491 PDNPVYYPAWQIDLIDGSDASIANKKMTDASLKFLPRAIMSKPDQFDKVWQDYVDEYKKI 550 Query: 475 DIKAYEDRMNEGIQQRIEKWS 495 ++KAYEDR+NE IQ RI+ WS Sbjct: 551 NVKAYEDRINEQIQWRIQNWS 571 >B3K5B1.1 B3K5B1_9BACI Extracellular solute-binding protein family 1 Length = 567 Score = 582 bits (1499), Expect = e-164, Method: Compositional matrix adjust. Identities = 284/502 (56%), Positives = 361/502 (71%), Gaps = 9/502 (1%) Query: 4 PGQQPTPDNKILKLIKDETGISFNMEFLVGDLQQKLGVMIAGGDYPDILSGDDKLINAKA 63 P QQPTPDNKI KLI+++TG SF EFL GD+ QKLGVMIAGGDYPD+++ + KL A A Sbjct: 67 PDQQPTPDNKIYKLIREKTGASFKFEFLAGDIDQKLGVMIAGGDYPDMMTANQKLTAAGA 126 Query: 64 YIPLEDLIEKYAPNLKKHYGAVWNQIKDESDGHIYVLPSYGVYQGKITEPTYQGPGFWLQ 123 +IPLEDLIE++APNLKKHY WN +KD +DGHIY LP+YGV +T Y GP FW+Q Sbjct: 127 FIPLEDLIEEHAPNLKKHYEKYWNMMKDPNDGHIYNLPNYGVTNADVTSSYYSGPAFWIQ 186 Query: 124 KGVLEEMGYPTPKTLDEYFDIIAKYKEKHPDM-----IGFESLNFDWRVFPLQNPPEHLS 178 K VL E GYP KTLD+YFDII +YKEKHP + IGFE LN+DW+ + L N P+HL Sbjct: 187 KDVLAEAGYPEVKTLDQYFDIIKQYKEKHPTIDGTPTIGFEILNYDWKNWGLFNAPQHLI 246 Query: 179 GHPNDGAVIVDNNVAQIFADKDISKTYYKKLNEINAQGLMDKEAFVQNYDQYLAKVASGK 238 GHPNDG V+V + A+IFADKD +K YYKKLNE+NA G++DKE F QN+DQY+AK++SG Sbjct: 247 GHPNDGGVVVKDGKAEIFADKDYAKRYYKKLNEMNALGIIDKETFTQNFDQYMAKISSGA 306 Query: 239 VIGMFDQHWNFQDGEKSLISQGKLENTYIGFPLLY-PGAEEWYRDRGAVGTNRGFGISIN 297 V+GMFDQHWNFQ E +LI+Q K E TY+G PL++ ++ Y+DR A+ N GFGI++N Sbjct: 307 VLGMFDQHWNFQSAEDALITQKKDERTYVGLPLVFDESIKDHYKDRPALNLNNGFGITVN 366 Query: 298 AKD--PVRIIKFWDKMITEDWQKTLQWGVKGEDYEVNADGSFYRTPEQRANADQTSWQVA 355 A + +RIIK D +I EDWQK L WG++GEDY V DG F +T EQR +W++A Sbjct: 367 ASEEQAIRIIKLLDTLIQEDWQKILSWGIEGEDYIVK-DGRFMKTQEQRDLFTDATWKLA 425 Query: 356 NKISGMFGYMPKIQGTYSDGNAADAGTQPQEFFDSLKPYDQKILKAYNKKSWSEFFKEPK 415 NK G PK++G +SDGNA D QP+E +L+ YD+ L Y S+ +FF Sbjct: 426 NKADSFHGQAPKMEGLFSDGNATDGAAQPEEMVAALREYDKNFLAQYGFNSYVDFFSPAP 485 Query: 416 ENNIYFPAYSIVLKDGSPAQLAQSKLNDLQIKYLPKAIMASPAEFDSVWQDYVDRIHKLD 475 EN I +PA+S+ L DGS A++ +K N+L KYLPKAI+A P EFDSVW +YV I KL+ Sbjct: 486 ENEIAYPAWSVDLVDGSEAKIVNTKQNELSTKYLPKAILAKPQEFDSVWDEYVSEIRKLN 545 Query: 476 IKAYEDRMNEGIQQRIEKWSVK 497 IKAYEDR+NE +Q R + WSVK Sbjct: 546 IKAYEDRINEVLQWRRDTWSVK 567 >B8I4I4.1 B8I4I4_CLOCE Extracellular solute-binding protein family 1 Length = 567 Score = 540 bits (1392), Expect = e-152, Method: Compositional matrix adjust. Identities = 264/506 (52%), Positives = 358/506 (70%), Gaps = 12/506 (2%) Query: 1 MNGPGQQPTPDNKILKLIKDETGISFNMEFLVGDLQQKLGVMIAGGDYPDILS-GDD--- 56 ++ PGQ PTPDNKI K IK+E G++ N EFLVGD QK+GVMIAGG+YPD+++ G D Sbjct: 61 ISDPGQAPTPDNKIYKKIKEELGVTCNFEFLVGDKNQKIGVMIAGGEYPDVVTVGSDTVS 120 Query: 57 KLINAKAYIPLEDLIEKYAPNLKKHYGAVWNQIKDESDGHIYVLPSYGVYQGKITEPTYQ 116 K A A +PLED+IEK APNLKKH+ N++KD DGH Y +P YGVY + + Sbjct: 121 KFTGAGALVPLEDIIEKSAPNLKKHFDPFKNKVKDVEDGHFYAMPGYGVYYNDFSINVNE 180 Query: 117 GPGFWLQKGVLEEMGYPTPKTLDEYFDIIAKYKEKHPDM-----IGFESLNFDWRVFPLQ 171 GP F++QK VL++ GYP KTLD+YFD+I KYK K+P + IGFE L+ WR F L+ Sbjct: 181 GPAFFIQKAVLKDAGYPKVKTLDQYFDLIEKYKAKNPTIDGQPTIGFEILSEGWRDFCLK 240 Query: 172 NPPEHLSGHPNDGAVIVDN--NVAQIFADKDISKTYYKKLNEINAQGLMDKEAFVQNYDQ 229 NPP+HL GHPNDG V+V++ N A+ F DKD +K YYKK+NEINA+GL+D E F N+DQ Sbjct: 241 NPPQHLIGHPNDGGVVVNSETNTAEFFWDKDYAKRYYKKINEINAKGLLDPETFTMNFDQ 300 Query: 230 YLAKVASGKVIGMFDQHWNFQDGEKSLISQGKLENTYIGFPLLY-PGAEEWYRDRGAVGT 288 Y+AK++SG+V+GMFDQHWNF + E +L +Q K E TY PL++ ++Y DR + Sbjct: 301 YIAKLSSGRVLGMFDQHWNFNNAELTLKTQKKFERTYAPLPLVFDEDTRDYYMDRPVLNV 360 Query: 289 NRGFGISINAKDPVRIIKFWDKMITEDWQKTLQWGVKGEDYEVNADGSFYRTPEQRANAD 348 N G+ I+ +AK+P RI+KF+D ++TE+WQ L WG+K EDY+V DG FY TPEQR N + Sbjct: 361 NTGYAITKSAKNPERIVKFFDALLTEEWQTILGWGIKDEDYKVGDDGMFYMTPEQRVNYN 420 Query: 349 QTSWQVANKISGMFGYMPKIQGTYSDGNAADAGTQPQEFFDSLKPYDQKILKAYNKKSWS 408 +W++AN ++ Y PK++GT+SDGNA G QP+E++D+L YD+ KAY S Sbjct: 421 DQTWRLANMAHTLWYYAPKMEGTFSDGNATGPGGQPKEYYDALDQYDKDFFKAYGYDQQS 480 Query: 409 EFFKEPKENNIYFPAYSIVLKDGSPAQLAQSKLNDLQIKYLPKAIMASPAEFDSVWQDYV 468 +FF EN I +PA+ I L DGSPA +A +K+ D+ KYLPKAI+A P +FDSVW +YV Sbjct: 481 DFFSPAPENRISYPAWQIDLVDGSPASMANTKVGDIATKYLPKAILAKPDKFDSVWDEYV 540 Query: 469 DRIHKLDIKAYEDRMNEGIQQRIEKW 494 +++HK DI+AY DR+N+ ++ R E W Sbjct: 541 NQLHKEDIQAYVDRINDQLKWRAENW 566 >C0V961.1 C0V961_9MICO Carbohydrate ABC transporter substrate-binding protein, CUT1 family Length = 553 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 221/513 (43%), Positives = 323/513 (62%), Gaps = 24/513 (4%) Query: 1 MNGPGQQPTPDNKILKLIKDETGISFNMEFLVGD-LQQKLGVMIAGGDYPDILSGDD--- 56 + Q P PDNKI +LIK++ G++ E + D + QK+GVM+AGG++PD++ D Sbjct: 46 ITAASQAPAPDNKIAQLIKEQLGVTLEYEIVTPDNVDQKIGVMLAGGEFPDLVGTTDLKM 105 Query: 57 KLINAKAYIPLEDLIEKYA-PNLKKHYGAVWNQIK------DESDGHIYVLPSYGVYQGK 109 +L+ A +PL+D++ PN+ H V + IK E D +Y++P+Y + G+ Sbjct: 106 RLLEGGALLPLDDMLATGDYPNIATH---VEDDIKKMSYSGSEVDPGLYIIPNYNRFYGE 162 Query: 110 ITEPTYQGPGFWLQKGVLEEMGYPTPK--TLDEYFDIIAKYKEKHPDM-----IGFESLN 162 +T TY GP FW+QK VLE+ GYP + T++ YF +I +K KHP+ +GFE L Sbjct: 163 VTGGTYYGPAFWIQKRVLEDAGYPDLENMTIERYFKLIENFKAKHPETNGIPTVGFELLA 222 Query: 163 FDWRVFPLQNPPEHLSGHPNDGAVIVD-NNVAQIFADKDISKTYYKKLNEINAQGLMDKE 221 R + + NPP L+G PN+G VIVD + A+I+A+KDI+K +Y+ LNE +GL+D+E Sbjct: 223 SVGREWGMTNPPALLAGSPNNGGVIVDEDGNAEIYANKDIAKDFYQVLNEKYDEGLVDRE 282 Query: 222 AFVQNYDQYLAKVASGKVIGMFDQHWNFQDGEKSLISQGKLENTYIGFPLLYPGAEEWYR 281 +F +DQY AK+A+G ++GM DQ WNFQ SL S G E TY+ +Y G E WY Sbjct: 283 SFTLTFDQYTAKLATGAILGMHDQGWNFQTATDSLRSAGNDEYTYVPLMPVYDGVEPWYA 342 Query: 282 DRGAVGTNRGFGISINAKDPVRIIKFWDKMITEDWQKTLQWGVKGEDYEVNADGSFYRTP 341 DR + TN+GFGIS +++ P + +KF D M++E WQK L WG++GEDYEV DG FYRT Sbjct: 343 DRDVMNTNQGFGISTSSEQPEKALKFLDIMLSEPWQKVLSWGIEGEDYEVGDDGIFYRTE 402 Query: 342 EQRANADQTSWQVANKISGMFGYMPKIQGTYSDGNAADAGTQPQEFFDSLKPYDQKILKA 401 EQRANA +W+ +N++ + +PK QG +SDGNA QP EFF++L YD+ ++ Sbjct: 403 EQRANARDITWRASNRLEALLEVLPKHQGQFSDGNAYGPDDQPTEFFETLTDYDRGFMEQ 462 Query: 402 YNKKSWSEFFKEPKENNIYFPAYSIVLKDGSPAQLAQSKLNDLQIKYLPKAIMASPAEFD 461 Y KK+W +F EP EN Y+PA++I L D A +L D +++LPK I PA+F+ Sbjct: 463 YGKKTWRQFVNEPPENPTYYPAWNIGLDDD--ANQVNQQLTDANVQHLPKIIAGDPADFE 520 Query: 462 SVWQDYVDRIHKLDIKAYEDRMNEGIQQRIEKW 494 + WQ Y+ I ++D+ YED +N GIQ R+ W Sbjct: 521 ANWQAYLGTIDRIDVGVYEDAINAGIQDRLANW 553 >Q9KB24.1 Q9KB24_BACHD BH2111 protein Length = 561 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 195/494 (39%), Positives = 309/494 (62%), Gaps = 13/494 (2%) Query: 9 TPDNKILKLIKDETGISFNMEFLVGDLQQKLGVMIAGGDYPDILSGD---DKLINAKAYI 65 T + I K+++++TG++F +E LVGD+ Q+ GVMIA GDYPD++ D D L++A A+I Sbjct: 66 TNETYIGKMLEEKTGVNFKVEHLVGDINQRTGVMIASGDYPDVIVPDAAIDALLDAGAFI 125 Query: 66 PLEDLIEKYAPNLKKHYGAVWNQIKDESDGHIYVLPSYGVYQGKITEPTYQGPGFWLQKG 125 PL DL+E++ PNL + YG + + DG+IY +P P FW+Q+G Sbjct: 126 PLNDLLEEHGPNLLEAYGDYLHMFTHD-DGNIYYIPFGATVNEFQPNPNIDQGAFWIQRG 184 Query: 126 VLEEMGYPTPKTLDEYFDIIAKYKEKHPDMIG-----FESLNFDWRVFPLQNPPEHLSGH 180 +L+E G+P TLDEY DII +Y +++P++ G F L +DWR F N P HL+G+ Sbjct: 185 ILKEYGFPEINTLDEYLDIITRYAKENPEIDGMRTIPFTGLTYDWRFFAFTNVPNHLAGY 244 Query: 181 PNDGAVIVDNNV--AQIFADKDISKTYYKKLNEINAQGLMDKEAFVQNYDQYLAKVASGK 238 PNDG V+VD + A ++AD + +K + K LNE+NA+GL+D+E FV NYD+YL K++SG+ Sbjct: 245 PNDGGVMVDMDTHEASVYADSEYAKRWLKALNELNAEGLLDQEMFVMNYDEYLEKLSSGR 304 Query: 239 VIGMFDQHWNFQDGEKSLISQGKLENTYIGFPLLY-PGAEEWYRDRGAVGTNRGFGISIN 297 V+G FD W F +L G + Y+ P+++ G ++ Y D A NRG GI++N Sbjct: 305 VLGFFDYGWQFGTASNALRDAGNPDREYMALPVVFDEGIKDQYIDPPAFTGNRGVGITVN 364 Query: 298 AKDPVRIIKFWDKMITEDWQKTLQWGVKGEDYEVNADGSFYRTPEQRANADQTSWQVANK 357 A++P RII+FWD++I ED Q+ + WG++GE Y V+ +G FY+T EQ + +++ Sbjct: 365 AENPERIIQFWDELIKEDNQRLVMWGIEGEHYNVDENGRFYQTEEQIEIVNNQNFRDEFG 424 Query: 358 ISGMFGYMPKIQGTYSDGNAADAGTQPQEFFDSLKPYDQKILKAYNKKSWSEFFKEPKEN 417 ++ P+I GT+SDGNA +A QP+ F S D++ L+AY +++E F EP E Sbjct: 425 MTTFEWSWPRINGTFSDGNAVEARRQPEVAFASYNDDDKEYLEAYGISTFAELFSEPDER 484 Query: 418 NIYFPAYSIVLKDGSPAQLAQSKLNDLQIKYLPKAIMASPAEFDSVWQDYVDRIHKLDIK 477 ++PA+S ++ GSP Q+ + + +++ ++ + ++A PA+FD W D+V LD+ Sbjct: 485 P-WYPAWSANIEQGSPQQIFEERADEILRRHYARIVLADPADFDKEWDDFVQAYRSLDVD 543 Query: 478 AYEDRMNEGIQQRI 491 AYE+ E +Q R+ Sbjct: 544 AYENFFTEVVQARV 557 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.137 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,479,816,001 Number of extensions: 162736902 Number of successful extensions: 378676 Number of sequences better than 1.0e-05: 150 Number of HSP's gapped: 378312 Number of HSP's successfully gapped: 151 Length of query: 497 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 357 Effective length of database: 1,741,754,103 Effective search space: 621806214771 Effective search space used: 621806214771 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)