BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0210.0011.p (328 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K5B2.1 B3K5B2_9BACI Binding-protein-dependent transport system... 455 e-126 B1D4M6.1 B1D4M6_9BACL Binding-protein-dependent transport system... 453 e-125 B8I4I5.1 B8I4I5_CLOCE Binding-protein-dependent transport system... 451 e-125 B3K841.1 B3K841_9BACI Binding-protein-dependent transport system... 407 e-112 A9QDR7.1 A9QDR7_9BACL LplB 402 e-110 >B3K5B2.1 B3K5B2_9BACI Binding-protein-dependent transport systems inner membrane component Length = 319 Score = 455 bits (1171), Expect = e-126, Method: Compositional matrix adjust. Identities = 217/307 (70%), Positives = 262/307 (85%), Gaps = 1/307 (0%) Query: 22 PEIGVSLSWKTLKAQKQLIFMSVPIALYLIIFNYVPIWGWLMAFQNYRPAVSFGQQEWVG 81 P+ ++W LK Q+QLI+MSVP+ Y+I+F YVPIWGW MAFQ+Y+PA F +Q+WVG Sbjct: 14 PKKNKKITWAVLKEQRQLIYMSVPLMAYIILFAYVPIWGWTMAFQDYKPARDFSEQKWVG 73 Query: 82 LQQFKFLFSDDTFMLVLRNTIAMSFINLVLGTVTAIGLALLLNEIKLKFFKRAVQSISYL 141 + F+FLF DD+F+ VLRNT+AMS IN++LG TAI LALLLNEI+ F+KR VQ+ISYL Sbjct: 74 FKHFEFLFKDDSFLQVLRNTLAMSVINMILGFTTAIILALLLNEIRKVFWKRTVQTISYL 133 Query: 142 PHFLSMVIAAGIVSTSLSIDGGIVNVVLMKLHLIKDPIMWLSEGKYFWGIIGASNVWKEV 201 PHFLS +I GIV+TSL+ DG I+N +LMKLHLIK+PI WLSEGKYFWGI+GAS+VWKEV Sbjct: 134 PHFLSWIIVTGIVATSLASDG-IINDILMKLHLIKEPIQWLSEGKYFWGIVGASHVWKEV 192 Query: 202 GWGTIIYLAAITSIDPSLYEAASIDGAKRFQKMRYITLPGIKATFVILLIMNIGHILDAG 261 GW TIIYLAA+ SIDP+LYEAA +DGA R++KM ++TLPGIK T +ILLIM +GHIL+AG Sbjct: 193 GWNTIIYLAAMASIDPALYEAADMDGASRYRKMFHVTLPGIKPTIIILLIMQVGHILEAG 252 Query: 262 FELQYLLGNGLTVDYSQTIDIFVVKYGLAMGNYSLATAAGIFKTIVSVILVFIANNVAKR 321 FE+QYLLGNGL VD+SQTIDIFV+KYGLA GNYSLATAAGIFKT+VSV L+ IAN VAKR Sbjct: 253 FEVQYLLGNGLVVDWSQTIDIFVLKYGLAQGNYSLATAAGIFKTVVSVTLLLIANGVAKR 312 Query: 322 LGEERLL 328 LGEERLL Sbjct: 313 LGEERLL 319 >B1D4M6.1 B1D4M6_9BACL Binding-protein-dependent transport systems inner membrane component Length = 320 Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust. Identities = 215/298 (72%), Positives = 259/298 (86%) Query: 31 KTLKAQKQLIFMSVPIALYLIIFNYVPIWGWLMAFQNYRPAVSFGQQEWVGLQQFKFLFS 90 K K Q QL++MS+P+ +Y+++F+Y PIWGW MAFQNY+PA SFG+QEWVGL+QFKFLF+ Sbjct: 23 KRFKNQGQLMWMSLPVLIYVMLFSYYPIWGWTMAFQNYKPAKSFGEQEWVGLKQFKFLFT 82 Query: 91 DDTFMLVLRNTIAMSFINLVLGTVTAIGLALLLNEIKLKFFKRAVQSISYLPHFLSMVIA 150 DD+F+ VLRNTI MS IN+VLG VTAI A+LLNE+K K FKR++Q+ISYLPHFLS +I Sbjct: 83 DDSFLRVLRNTIGMSAINMVLGFVTAIIFAILLNEVKNKLFKRSIQTISYLPHFLSWIIV 142 Query: 151 AGIVSTSLSIDGGIVNVVLMKLHLIKDPIMWLSEGKYFWGIIGASNVWKEVGWGTIIYLA 210 GIV+TSLS+DGGIVN VLMKL +I +PIMWLSE KYFWGI+GAS+VWKEVGW IIYLA Sbjct: 143 TGIVATSLSVDGGIVNEVLMKLGIIHEPIMWLSEPKYFWGIVGASHVWKEVGWNAIIYLA 202 Query: 211 AITSIDPSLYEAASIDGAKRFQKMRYITLPGIKATFVILLIMNIGHILDAGFELQYLLGN 270 AITSIDPSLYEAA IDGA R+ KM YITLPGIK+ +ILLIMN+G IL+AGFE+QYLLGN Sbjct: 203 AITSIDPSLYEAAEIDGANRYHKMWYITLPGIKSIVIILLIMNLGWILEAGFEVQYLLGN 262 Query: 271 GLTVDYSQTIDIFVVKYGLAMGNYSLATAAGIFKTIVSVILVFIANNVAKRLGEERLL 328 G+ VD+S+TIDIFV+KYGL GNYSLATAAGIFKT+VS+ L++ AN +AKR GEERL+ Sbjct: 263 GVVVDWSETIDIFVLKYGLKQGNYSLATAAGIFKTVVSITLIYAANTIAKRFGEERLI 320 >B8I4I5.1 B8I4I5_CLOCE Binding-protein-dependent transport systems inner membrane component Length = 323 Score = 451 bits (1161), Expect = e-125, Method: Compositional matrix adjust. Identities = 213/304 (70%), Positives = 262/304 (86%) Query: 25 GVSLSWKTLKAQKQLIFMSVPIALYLIIFNYVPIWGWLMAFQNYRPAVSFGQQEWVGLQQ 84 G ++W TL QKQLIFMSVP+ +Y++IF+YVPIWGWLMAFQNY+PA F +Q+WVGLQ Sbjct: 20 GHKITWNTLVKQKQLIFMSVPMLIYVLIFSYVPIWGWLMAFQNYKPAKGFFEQKWVGLQN 79 Query: 85 FKFLFSDDTFMLVLRNTIAMSFINLVLGTVTAIGLALLLNEIKLKFFKRAVQSISYLPHF 144 FK+L DD F+ RNTI MSFINLVL VTAI LALLLNEIK FFKR VQ+ISYLPHF Sbjct: 80 FKYLLRDDNFIRDFRNTICMSFINLVLSYVTAIVLALLLNEIKNVFFKRTVQTISYLPHF 139 Query: 145 LSMVIAAGIVSTSLSIDGGIVNVVLMKLHLIKDPIMWLSEGKYFWGIIGASNVWKEVGWG 204 LS VI GIV+T LS +GGIVN+VL+KL +I PI WLSEGKYFWGI+GA+NVWKE+GW Sbjct: 140 LSWVIVTGIVATCLSTEGGIVNIVLVKLGIINSPINWLSEGKYFWGIVGATNVWKELGWN 199 Query: 205 TIIYLAAITSIDPSLYEAASIDGAKRFQKMRYITLPGIKATFVILLIMNIGHILDAGFEL 264 TIIYL AIT+IDP+LYEAA +DGA RF+KM+++TLPGIKATFV+LLIM+IGH+++AGFE+ Sbjct: 200 TIIYLGAITAIDPALYEAADLDGAGRFKKMQHVTLPGIKATFVVLLIMSIGHVMEAGFEI 259 Query: 265 QYLLGNGLTVDYSQTIDIFVVKYGLAMGNYSLATAAGIFKTIVSVILVFIANNVAKRLGE 324 QYLLG G +D+S+TIDI+V+KYG+ NYSLATAAGIFK+++++I++F+ANNVAKRLGE Sbjct: 260 QYLLGKGPVLDWSETIDIYVIKYGINQFNYSLATAAGIFKSVIAIIMLFLANNVAKRLGE 319 Query: 325 ERLL 328 ERL+ Sbjct: 320 ERLI 323 >B3K841.1 B3K841_9BACI Binding-protein-dependent transport systems inner membrane component Length = 346 Score = 407 bits (1047), Expect = e-112, Method: Compositional matrix adjust. Identities = 192/298 (64%), Positives = 245/298 (82%) Query: 31 KTLKAQKQLIFMSVPIALYLIIFNYVPIWGWLMAFQNYRPAVSFGQQEWVGLQQFKFLFS 90 + L QK L+FMS+P ++L +F Y+P+WGW +AFQ+++PA QEWVGLQ F FLF Sbjct: 49 RKLLQQKALVFMSIPFLIWLFVFKYMPLWGWTIAFQDFKPAKKIFDQEWVGLQHFTFLFQ 108 Query: 91 DDTFMLVLRNTIAMSFINLVLGTVTAIGLALLLNEIKLKFFKRAVQSISYLPHFLSMVIA 150 D+ F+ V+RNT+AMSFINLVLG VTAI LA+LLNE++ FKR VQ+ISYLPHF+S V+A Sbjct: 109 DEHFLRVMRNTLAMSFINLVLGFVTAIVLAILLNELRNLMFKRVVQTISYLPHFISWVVA 168 Query: 151 AGIVSTSLSIDGGIVNVVLMKLHLIKDPIMWLSEGKYFWGIIGASNVWKEVGWGTIIYLA 210 A I+ST+LS DGGI+N +LM +IK+PI+WL EG+YFWGI+G S VWK VGW TIIYLA Sbjct: 169 ASIISTALSADGGIINELLMWFGIIKEPILWLGEGEYFWGILGVSEVWKNVGWNTIIYLA 228 Query: 211 AITSIDPSLYEAASIDGAKRFQKMRYITLPGIKATFVILLIMNIGHILDAGFELQYLLGN 270 A+T IDPS YEAA IDGA RFQ++ ITLPG+K F+ILLIMNIG++L++GFE QYLLGN Sbjct: 229 AMTMIDPSQYEAAEIDGAGRFQRIWNITLPGLKPVFIILLIMNIGNLLESGFEPQYLLGN 288 Query: 271 GLTVDYSQTIDIFVVKYGLAMGNYSLATAAGIFKTIVSVILVFIANNVAKRLGEERLL 328 G+ VDYS+ +DIFV+KYG+ MGN+SL+ AAG+FKT+VS IL+F AN++AKRLGE+RL Sbjct: 289 GMNVDYSENLDIFVLKYGIQMGNFSLSIAAGMFKTVVSFILLFTANHIAKRLGEDRLF 346 >A9QDR7.1 A9QDR7_9BACL LplB Length = 323 Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust. Identities = 195/305 (63%), Positives = 246/305 (80%), Gaps = 1/305 (0%) Query: 23 EIGVSLSWKTLKAQKQLIFMSVPIALYLIIFNYVPIWGWLMAFQNYRPAVSFGQQEWVGL 82 E + L +K L QK L+FMS+P L+L +F YVP+WGW ++FQ +RPA QEWVG Sbjct: 19 ESRLQLFFKKLLQQKVLVFMSMPFVLWLFLFKYVPLWGWTISFQKFRPAKDLFDQEWVGW 78 Query: 83 QQFKFLFSDDTFMLVLRNTIAMSFINLVLGTVTAIGLALLLNEIKLKFFKRAVQSISYLP 142 + F FLF+DD+F VLRNTI MS INLVLG VTAI LA+LLNE++ FKR VQ+ISYLP Sbjct: 79 KNFNFLFNDDSFYRVLRNTIVMSSINLVLGFVTAIVLAILLNELRQIMFKRVVQTISYLP 138 Query: 143 HFLSMVIAAGIVSTSLSIDGGIVNVVLMKLHLIKDPIMWLSEGKYFWGIIGASNVWKEVG 202 HF+S V+AA I+S++L+ +G IVN++L ++HLI PI+WL +G YFWGI+GAS VWK VG Sbjct: 139 HFISWVVAANIISSALAPEG-IVNILLTRMHLIDQPILWLGKGNYFWGILGASEVWKNVG 197 Query: 203 WGTIIYLAAITSIDPSLYEAASIDGAKRFQKMRYITLPGIKATFVILLIMNIGHILDAGF 262 W TIIYLAAIT+IDPS YEAA IDGA R Q++ +ITLPG+K+ VILLIMN+G+IL++GF Sbjct: 198 WNTIIYLAAITTIDPSQYEAAEIDGANRLQRILHITLPGLKSVIVILLIMNLGNILESGF 257 Query: 263 ELQYLLGNGLTVDYSQTIDIFVVKYGLAMGNYSLATAAGIFKTIVSVILVFIANNVAKRL 322 E QYLLGNG+TVDYS+ +DIFV+KYG+ MGNYSLATAAG+FKT+VS I + AN++AKRL Sbjct: 258 EPQYLLGNGMTVDYSENLDIFVLKYGMNMGNYSLATAAGMFKTVVSFIFLLSANSIAKRL 317 Query: 323 GEERL 327 GE RL Sbjct: 318 GESRL 322 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.142 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,742,236,035 Number of extensions: 68889653 Number of successful extensions: 237361 Number of sequences better than 1.0e-05: 5143 Number of HSP's gapped: 233604 Number of HSP's successfully gapped: 5143 Length of query: 328 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 192 Effective length of database: 1,779,438,163 Effective search space: 341652127296 Effective search space used: 341652127296 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 131 (55.1 bits)