BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0210.0010.p (303 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D4M5.1 B1D4M5_9BACL Binding-protein-dependent transport system... 401 e-110 B8I4I6.1 B8I4I6_CLOCE Binding-protein-dependent transport system... 394 e-108 B3K5B3.1 B3K5B3_9BACI Binding-protein-dependent transport system... 391 e-107 C0V963.1 C0V963_9MICO Carbohydrate ABC transporter membrane prot... 342 4e-92 B3K840.1 B3K840_9BACI Binding-protein-dependent transport system... 330 9e-89 >B1D4M5.1 B1D4M5_9BACL Binding-protein-dependent transport systems inner membrane component Length = 300 Score = 401 bits (1031), Expect = e-110, Method: Compositional matrix adjust. Identities = 183/298 (61%), Positives = 248/298 (83%) Query: 6 KGSSRIEPVVFHTINTIFMLFVVTVTLYPFLQTLAVSFNDGSDTLAGGIYLWPRAWTLEN 65 K + ++EP +F T+N I M+ + VTLYPFL TLAVSFN G DT+ GGIY+WPR WTL+N Sbjct: 3 KRTLQLEPAIFGTVNAIIMILLAVVTLYPFLNTLAVSFNAGLDTIRGGIYVWPREWTLQN 62 Query: 66 YRAVFISGTIYHAAFISVSRTIISTVLGVFLTTMLAYALAQPQYIFRKKISLLFILTMYF 125 Y+AVF++GT+++A FIS++RT+++TVL +FLTTMLAY +++ +Y FRK I+++ ++TMYF Sbjct: 63 YKAVFVTGTVFNAFFISIARTVLATVLSLFLTTMLAYTVSRKEYAFRKAITIIIVMTMYF 122 Query: 126 NAGLIPNYFLIKNMGLLHNFMVYILPSLVSAFNLIIMRTYIRGLPFSLTESAKIDGAGEF 185 NAGLIP YFL+K++ LL+NF+VYI+P LVSAFN+I++RTYI L SL ESAK+DGAG+F Sbjct: 123 NAGLIPYYFLVKDLHLLNNFLVYIVPGLVSAFNMIVIRTYIGTLSESLIESAKVDGAGDF 182 Query: 186 RIFWKIIFPLCTPVLATVALFIAVGSWNAWFDTFLYASSDLKLSTLQYEMMKMLGSIMSA 245 RIF ++I PLC PVLATVALF+AVG WN+WFDTFL+ SS +LSTLQYE+MK+L S M++ Sbjct: 183 RIFLQVILPLCQPVLATVALFVAVGQWNSWFDTFLFTSSKQELSTLQYELMKLLSSAMNS 242 Query: 246 NNDPSMLAGNQNNQVQSLVTPASMRSAITIVTAVPILFVYPFLQKYFVVGLNLGSVKE 303 N++P++ G + +++VTP S+R+AITIV ++PIL VYPFLQKYFVVG+ LG VKE Sbjct: 243 NSNPALQNGGDASAAKAMVTPLSIRAAITIVASLPILVVYPFLQKYFVVGMQLGGVKE 300 >B8I4I6.1 B8I4I6_CLOCE Binding-protein-dependent transport systems inner membrane component Length = 304 Score = 394 bits (1012), Expect = e-108, Method: Compositional matrix adjust. Identities = 186/296 (62%), Positives = 245/296 (82%), Gaps = 2/296 (0%) Query: 10 RIEPVVFHTINTIFMLFVVTVTLYPFLQTLAVSFNDGSDTLAGGIYLWPRAWTLENYRAV 69 RI VF+T N +FM+ ++ VTLYPFL TLA+SFN+G DTL GGIYLWPR ++ +NY+A+ Sbjct: 9 RIGDAVFNTFNFVFMVLLMIVTLYPFLNTLAISFNNGVDTLRGGIYLWPREFSFQNYKAI 68 Query: 70 FISGTIYHAAFISVSRTIISTVLGVFLTTMLAYALAQPQYIFRKKISLLFILTMYFNAGL 129 FI G ++HA +SV RT+ISTVL +FLTTML++ L++ +Y+FRK I+++F+LTMYFNAG+ Sbjct: 69 FIGGNVFHAFLVSVERTVISTVLNLFLTTMLSFTLSRKEYVFRKPITIVFVLTMYFNAGI 128 Query: 130 IPNYFLIKNMGLLHNFMVYILPSLVSAFNLIIMRTYIRGLPFSLTESAKIDGAGEFRIFW 189 IPNYFLIKN+ LL++F VY+LPSL++AFN+I++RT+I G+P S ESA+IDGAG+FRIF Sbjct: 129 IPNYFLIKNLHLLNSFWVYVLPSLIAAFNMIVIRTFIIGIPESFVESARIDGAGDFRIFI 188 Query: 190 KIIFPLCTPVLATVALFIAVGSWNAWFDTFLYASSDLKLSTLQYEMMKMLGSIMSANNDP 249 +IIFPLC PVLAT+ALF+AVG+WN WFDTFLY SS LSTLQYE+MK+L S + N +P Sbjct: 189 QIIFPLCKPVLATIALFVAVGAWNTWFDTFLYCSSKQNLSTLQYELMKLLSSTQNFNANP 248 Query: 250 SMLAG-NQNNQ-VQSLVTPASMRSAITIVTAVPILFVYPFLQKYFVVGLNLGSVKE 303 ++ AG N+Q ++VT S+R+AITIV AVPI+ VYPFLQ+YFVVGLN+G VKE Sbjct: 249 ALAAGVGANSQTADTMVTSLSIRAAITIVAAVPIIIVYPFLQRYFVVGLNVGGVKE 304 >B3K5B3.1 B3K5B3_9BACI Binding-protein-dependent transport systems inner membrane component Length = 319 Score = 391 bits (1004), Expect = e-107, Method: Compositional matrix adjust. Identities = 184/295 (62%), Positives = 249/295 (84%), Gaps = 2/295 (0%) Query: 11 IEPVVFHTINTIFMLFVVTVTLYPFLQTLAVSFNDGSDTLAGGIYLWPRAWTLENYRAVF 70 +E ++F+T NT+FM+ +V VTLYPFL T+ VS N G+DT+ GGIYLWPR +T +NY+AVF Sbjct: 25 VESILFNTFNTLFMIGLVVVTLYPFLNTIVVSLNAGNDTIRGGIYLWPREFTWQNYKAVF 84 Query: 71 ISGTIYHAAFISVSRTIISTVLGVFLTTMLAYALAQPQYIFRKKISLLFILTMYFNAGLI 130 SGTIY A +ISV+RT++ST+L + LTTMLAY L++ +Y+FRK I+L+FILTMYFNAGLI Sbjct: 85 ASGTIYDAFWISVARTVLSTLLNLGLTTMLAYTLSRREYVFRKPITLIFILTMYFNAGLI 144 Query: 131 PNYFLIKNMGLLHNFMVYILPSLVSAFNLIIMRTYIRGLPFSLTESAKIDGAGEFRIFWK 190 P YFL+K++ L+++F VY++PS++SAFN+I++RTYI +P SL ESA+IDGAG+F+IF + Sbjct: 145 PGYFLMKDLNLINSFWVYVIPSMISAFNMIVIRTYIGTIPESLVESARIDGAGDFKIFMR 204 Query: 191 IIFPLCTPVLATVALFIAVGSWNAWFDTFLYASSDLKLSTLQYEMMKMLGSIMSANNDPS 250 IIFPLC PVLAT+ALF+AVG+WN+WFD F+Y SS +LSTLQYE+MK+L S M+AN++P+ Sbjct: 205 IIFPLCKPVLATIALFVAVGAWNSWFDAFIYTSSRQELSTLQYELMKLLSSSMNANSNPA 264 Query: 251 MLAGN--QNNQVQSLVTPASMRSAITIVTAVPILFVYPFLQKYFVVGLNLGSVKE 303 + AG + ++VTP S+R+A+T+V +VPIL VYPFLQKYFVVGLN+GSVKE Sbjct: 265 VAAGAGMTKDSAVNMVTPISIRAAVTVVASVPILLVYPFLQKYFVVGLNVGSVKE 319 >C0V963.1 C0V963_9MICO Carbohydrate ABC transporter membrane protein 2, CUT1 family Length = 320 Score = 342 bits (876), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 164/294 (55%), Positives = 223/294 (75%), Gaps = 2/294 (0%) Query: 11 IEPVVFHTINTIFMLFVVTVTLYPFLQTLAVSFNDGSDTLAGGIYLWPRAWTLENYRAVF 70 IE +VF T+NT F++ + + +YP L TLA+S NDG D + GGI +WPRA++L+NY VF Sbjct: 26 IERIVFTTLNTTFLVALSALMVYPLLNTLAISLNDGMDAVRGGIGIWPRAFSLQNYEVVF 85 Query: 71 ISGTIYHAAFISVSRTIISTVLGVFLTTMLAYALAQPQYIFRKKISLLFILTMYFNAGLI 130 TIY A F+SV +T++ + T+MLAYAL++ ++IFR+ I+L+F+LTMYF+AGLI Sbjct: 86 NMHTIYQAFFMSVLKTVVVVATNLLFTSMLAYALSRNEFIFRRPITLIFVLTMYFDAGLI 145 Query: 131 PNYFLIKNMGLLHNFMVYILPSLVSAFNLIIMRTYIRGLPFSLTESAKIDGAGEFRIFWK 190 PNY LIK++GLL++F VY +P+++SAFNLI++RTY++ +P + ESA+IDGAGEFR +W+ Sbjct: 146 PNYLLIKDLGLLNSFHVYWVPTIISAFNLILLRTYMKSIPEEIIESARIDGAGEFRTWWQ 205 Query: 191 IIFPLCTPVLATVALFIAVGSWNAWFDTFLYASSDLKLSTLQYEMMKMLGSIMSANNDPS 250 I+ PLC P LA V LF+AVGSWNAW DT LY S LSTLQYE+ K+L S M+A + Sbjct: 206 IVMPLCKPTLAVVGLFVAVGSWNAWLDTLLYNSGAQWLSTLQYELQKLLSSSMNAGTNSG 265 Query: 251 MLAGNQNNQVQ--SLVTPASMRSAITIVTAVPILFVYPFLQKYFVVGLNLGSVK 302 +AG+ + Q + TP ++RSAITIV AVPILFVYPFLQK+FV GL +GSVK Sbjct: 266 GMAGSAASVAQGGQVTTPIALRSAITIVAAVPILFVYPFLQKHFVSGLMIGSVK 319 >B3K840.1 B3K840_9BACI Binding-protein-dependent transport systems inner membrane component Length = 311 Score = 330 bits (846), Expect = 9e-89, Method: Compositional matrix adjust. Identities = 164/292 (56%), Positives = 217/292 (74%), Gaps = 6/292 (2%) Query: 15 VFHTINTIFMLFVVTVTLYPFLQTLAVSFNDGSDTLAGGIYLWPRAWTLENYRAVFISGT 74 +F T N +FM+ ++ VTLYPF+ TLAVSFN+ +D++ GGIYLWPR +T ENY+ VF T Sbjct: 21 LFDTFNIVFMICLMIVTLYPFINTLAVSFNNATDSVKGGIYLWPRDFTWENYKYVFNEAT 80 Query: 75 IYHAAFISVSRTIISTVLGVFLTTMLAYALAQPQYIFRKKISLLFILTMYFNAGLIPNYF 134 I+HA FISV RT+I TV VF M+AY +++P+Y+ RK +S+ FILTMYF+ GLIPN+ Sbjct: 81 IFHATFISVLRTLIGTVTSVFCCAMVAYTISRPEYVLRKFVSIAFILTMYFSGGLIPNFL 140 Query: 135 LIKNMGLLHNFMVYILPSLVSAFNLIIMRTYIRGLPFSLTESAKIDGAGEFRIFWKIIFP 194 LI+ +G+L F VYI+P L+ FN+I++R++I GLP + ESA+IDGAGEF F KI+ P Sbjct: 141 LIRELGMLGTFSVYIIPGLIGVFNVIVIRSFIEGLPEGILESARIDGAGEFTTFLKIVLP 200 Query: 195 LCTPVLATVALFIAVGSWNAWFDTFLYASSDLKLSTLQYEMMKMLG----SIMSANNDPS 250 LC PVLATV+LF AV WN+WFD FLY SS +LSTLQYE+MK+L S+ S N+ S Sbjct: 201 LCVPVLATVSLFTAVSQWNSWFDVFLYNSSYGELSTLQYELMKILQNSNSSLNSGNDYAS 260 Query: 251 MLAGNQNNQVQSLVTPASMRSAITIVTAVPILFVYPFLQKYFVVGLNLGSVK 302 A +++ Q VTP S+R+ +TIV +VPI+ VYPFLQKYFV G+ LG VK Sbjct: 261 QFASSESGANQ--VTPTSIRATMTIVASVPIILVYPFLQKYFVQGMTLGGVK 310 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.140 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,670,087,332 Number of extensions: 65393967 Number of successful extensions: 261792 Number of sequences better than 1.0e-05: 5590 Number of HSP's gapped: 254690 Number of HSP's successfully gapped: 5594 Length of query: 303 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 168 Effective length of database: 1,788,859,178 Effective search space: 300528341904 Effective search space used: 300528341904 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 131 (55.1 bits)