BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0210.0007.p (506 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D4M8.1 B1D4M8_9BACL Two component transcriptional regulator, A... 282 7e-74 B3K5B0.1 B3K5B0_9BACI Response regulator receiver 241 1e-61 A9QDR4.1 A9QDR4_9BACL YesN 233 4e-59 B8I4I1.1 B8I4I1_CLOCE Two component transcriptional regulator, A... 218 1e-54 B1D4N0.1 B1D4N0_9BACL Two component transcriptional regulator, A... 182 9e-44 >B1D4M8.1 B1D4M8_9BACL Two component transcriptional regulator, AraC family Length = 519 Score = 282 bits (721), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 195/520 (37%), Positives = 274/520 (52%), Gaps = 29/520 (5%) Query: 1 MYKVVLADDETFALEGLRTLTDWEELGFEVCGACENGEEALAAIIRSSPDLVITDIRMPE 60 MY+V+L DDE FA+EGL+ L DWE+ GFEV AC +GEEA I S PDLV+TDIRMP Sbjct: 1 MYRVLLVDDEPFAIEGLQLLIDWEKNGFEVESACGDGEEAARLIRESKPDLVVTDIRMPI 60 Query: 61 IDGLELIRRVRSLDMEQPIFIVLSGYGEFEYARTAIRYGVRHYLLKPVVDAEWDKV---L 117 +DGLELI ++R +Q F+V+SGY +FEYAR A++ GV HYL KP++ E D+V L Sbjct: 61 MDGLELISQMRLEGHKQTKFVVMSGYSDFEYARRALQLGVSHYLTKPIMSDEADEVLECL 120 Query: 118 TDITDELELRLKQTMQQSMLASRLLPLAIARMLEGHWAEPDEETAEQMDRLDEEAAGWTY 177 + E R K A R A+ +L G E + + R+ +AAGW Sbjct: 121 NKVLGEENRRQKAVRYTERCAQR---RALTALLRGE--ELSDADQSSIKRISADAAGWVC 175 Query: 178 VHV---EGHSSNITELCRELAGP-----AGAMFI---DLPGDQAGLVVESSSPAA--GLA 224 + V E ++ +E EL FI +L + ++ S +A A Sbjct: 176 IRVAVDESELASASEAVEELIDKGQGEGGVGGFILDQELTSFRMACILRDDSKSAMQDRA 235 Query: 225 EELYARLTRSGVKGSVS--IGPSVRSLRELPVSYREAAXXXAAARHYFYSDGCGPVDSAS 282 E LY L R V+GS S +G V+ EL SYR A A+ + FY P+ Sbjct: 236 ELLYKAL-RGAVRGSFSMVVGSLVKEPEELGSSYRHA---EEASAYLFYDRIERPLYYDE 291 Query: 283 EAEGQVNYTLPSAELIEEIISAVERLHEQKAAEKLGELFSVFRENRTDPGVVQMTGMDIM 342 E Y E E+II AVE E + E+L ++F F + RT P ++ IM Sbjct: 292 IKEQGFGYDSHLWEATEKIIEAVETNDEGRIVERLQQIFDHFADKRTMPSLISAFSTHIM 351 Query: 343 LRSMELLKEFGGADDQWIGMLDF--FRTEPKSLEDLQITLETALGTSMNYIRQHKERNSE 400 ++ + KE GG DQ + + SL L L + + + R Sbjct: 352 VQCSGIYKELGGDADQLLEKTGYPLIGANEHSLLKLHAFLLSFCLLCREELSLCRSRQQG 411 Query: 401 HPLIRVECFLREHYSEHLTVKEIAEHFYINPVYLGQAFIKKHGISILEYIHNLRIEAAKK 460 + +VE +LR+HY E +TVKEIAE FY+NPVYLGQAF +K+G+SI EYIH+LR+ AKK Sbjct: 412 GTIAKVEEYLRQHYCESVTVKEIAEIFYMNPVYLGQAFSRKYGVSIHEYIHHLRMNDAKK 471 Query: 461 RLIDTHDTVRSIVESVGYVHYHHFLREFEKRTALKPVQFR 500 L + + ++ E +GY Y HFL++FEKR +K +++ Sbjct: 472 LLHNQDISGAALAERLGYCSYQHFLKQFEKRFGMKLAEYK 511 >B3K5B0.1 B3K5B0_9BACI Response regulator receiver Length = 518 Score = 241 bits (615), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 169/519 (32%), Positives = 270/519 (52%), Gaps = 31/519 (5%) Query: 2 YKVVLADDETFALEGLRTLTDWEELGFEVCGACENGEEALAAIIRSSPDLVITDIRMPEI 61 +KV+L DDE ALEGL DWE LGF VCG NG E L I +PDLVITD+ MP + Sbjct: 11 FKVLLIDDEQGALEGLALWIDWERLGFSVCGTAGNGVEGLKMIHGLAPDLVITDVNMPLM 70 Query: 62 DGLELIRRVRSLDMEQPI-FIVLSGYGEFEYARTAIRYGVRHYLLKPVVDAEWDKVLTDI 120 DGL +I + + + F ++SGY EFEYAR A+R+G+ HYLLKP++ E ++ L+ I Sbjct: 71 DGLHMIETWQQHHRDSSVKFAIMSGYSEFEYARKALRHGIHHYLLKPIIAEEAEEELSKI 130 Query: 121 TDELELRLKQTMQQSMLASRL--LPLAIARMLEGHWAEPDEETA-EQMDRLDEEAAGWTY 177 +EL ++ + + S +A R + L + +LE P + ++ L W Sbjct: 131 HEEL-MQEHRRLSLSAIAKREEDVSLIMQTLLE----MPLRASGLSRLQVLSSAHQEWNV 185 Query: 178 VHVEGHSS---NITELCRELAGPAGAMF-IDLPGDQAGLVVESSSPAAGLAEELYARLTR 233 ++ S+ ++ E L+ A + + IDL ++ GLV S + L R Sbjct: 186 CLIQAESALFPDVKETVARLSAHANSEYVIDLESNRLGLVNGYSPDNGSVPSGTIRELVR 245 Query: 234 --SGVKGSVSIGPSVRSLRELPVSYREAAXXXAAARHYFYSDGCGPVDSASEAEGQ-VNY 290 +G + +++G +SL + Y A A H FY G + S E + +Y Sbjct: 246 HYAGQRLFMAVGEGQQSLVHIRRCYETAKE---AIEHQFYDPAYGGMISYEEVRDRPFHY 302 Query: 291 TLPSAELIEEIISAVERLHEQKAAEKLGELFSVFRENRTDPGVVQMTGMDIMLRSMELLK 350 P+ L++++I +VE L ++ E G S F E R PG+V+ + ++ + M+L++ Sbjct: 303 RYPT-NLMDDVIRSVELLDKKGYREAAGLAASRFAEQRIAPGIVKKMVIHVLYKIMDLVR 361 Query: 351 EFGGADDQWIGMLDFFRTEPKSLEDLQITLETALGTSMNY-------IRQHKERNSEHPL 403 E GA+ + + ++ L D L +G + + + + + R+S+ + Sbjct: 362 EAEGAEARILAA----KSNAAGLTDGTFHLNDLMGELLRFGEECIELLLKEQARHSQGII 417 Query: 404 IRVECFLREHYSEHLTVKEIAEHFYINPVYLGQAFIKKHGISILEYIHNLRIEAAKKRLI 463 + ++R+HY E+LT+K +AE FY++PVYLGQ ++K+GI E IHNLRIE A L Sbjct: 418 QEINDYIRQHYRENLTIKRLAELFYLHPVYLGQLLMRKNGIGFNELIHNLRIEEAAALLK 477 Query: 464 DTHDTVRSIVESVGYVHYHHFLREFEKRTALKPVQFRAQ 502 I E VGY HY+ FL+ FEKR + P +F+ + Sbjct: 478 QNKLKNSEIAERVGYTHYNQFLKHFEKRWGMAPNEFKKR 516 >A9QDR4.1 A9QDR4_9BACL YesN Length = 522 Score = 233 bits (593), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 170/536 (31%), Positives = 273/536 (50%), Gaps = 45/536 (8%) Query: 1 MYKVVLADDETFALEGLRTLTDWEELGFEVCGACENGEEALAAIIRSSPDLVITDIRMPE 60 MYKV+L DDE F +GLR L DWE LG+E+C NG+EAL I PDLVI DIRMP Sbjct: 1 MYKVLLVDDEIFVRKGLRNLIDWESLGYEICDEAGNGQEALEKIQLIKPDLVIADIRMPV 60 Query: 61 IDGLELIRRVRSLDMEQPIFIVLSGYGEFEYARTAIRYGVRHYLLKPVVDAEWDKVLTDI 120 +DGLELIR+V + P FI++SGY +F+YA+ A+RYGV Y+LKP+ +AE + L + Sbjct: 61 LDGLELIRKVTEEGVHSPTFIIVSGYHDFQYAQRALRYGVHDYILKPIDEAELETTLKAL 120 Query: 121 TDELELRLKQTMQQSMLASRLLPLAIARMLEGHWAEPDEE---TAEQMDRLDEEAAGWTY 177 + L L+ T+ L + + + +++G ++E D A QM E + + Y Sbjct: 121 SGTLGLKKLATIAGDSLVTDSI---VETLVQGQFSEADNGALCAALQM----PEFSSFDY 173 Query: 178 VHVEGHSSNITELCRELAGPAGAMFIDLPGDQAGL--VVESSSPAAGLA----------- 224 V VE H+S + A A+ + + V E +S GL Sbjct: 174 VLVELHASAQSAGTEWQAKELAAVVQSVSATPSSKIPVYEQTSGLFGLLIDRKPFLPPEI 233 Query: 225 ------EELYARLTR-SGVKGSVSIGPSVRSLRELPVSYREAAXXXAAARHYFYSDGCGP 277 L+A + + SG ++ IG +V L+E+ +SYR A A Y Y++ Sbjct: 234 RLESAYNSLHAAIAKSSGRPVTLYIGKTVERLQEMCLSYRAANE----AMSYKYAEQGSS 289 Query: 278 VDSASEAEGQVNYTLP-SAELIEEIISAVERLHEQKA---AEKLGELFSVFRENRTDPGV 333 V A++ +G Y +EL ++ ERL E A + + LF F E R P Sbjct: 290 VIYANQVQGTPLYYFDVDSELYSRLL---ERLEENNADLYEQDIELLFRQFVEKRFAPNA 346 Query: 334 VQMTGMDIMLRSMELLKEFGGADDQWIGMLDF---FRTEPKSLEDLQITLETALGTSMNY 390 V T ++ + ++++ G D++ + L F ++ L+DL+ L + Y Sbjct: 347 VANTITRFVIGIINIIRKMEG-DEKGLSKLPFIMDWQGSNSRLQDLKGLFTDFLREAAVY 405 Query: 391 IRQHKERNSEHPLIRVECFLREHYSEHLTVKEIAEHFYINPVYLGQAFIKKHGISILEYI 450 + + + S+ + R++ ++ +Y+E++++K IA FY+N VYLGQ F K +GI +++ Sbjct: 406 LAELRNEQSKGGIERIKKYIEANYTENISLKSIAGKFYMNSVYLGQLFRKTYGIYFNDFL 465 Query: 451 HNLRIEAAKKRLIDTHDTVRSIVESVGYVHYHHFLREFEKRTALKPVQFRAQAQGR 506 +RI AKK L T + I E VG+ + +F+ +FEK + P +R + G+ Sbjct: 466 LQIRIGEAKKLLRQTDLRMYEIAEKVGFQNADYFVTQFEKLEKVTPTDYRNKLLGK 521 >B8I4I1.1 B8I4I1_CLOCE Two component transcriptional regulator, AraC family Length = 525 Score = 218 bits (555), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 155/527 (29%), Positives = 259/527 (49%), Gaps = 32/527 (6%) Query: 1 MYKVVLADDETFALEGLRTLTDWEELGFEVCGACENGEEALAAIIRSSPDLVITDIRMPE 60 M KV+L DDE + LEGL+ + DWE GF +CG NGE+AL + +PDL++TDI MP Sbjct: 1 MLKVLLVDDEPYVLEGLKVMLDWEAHGFRICGEASNGEDALEIVRVCNPDLIMTDISMPR 60 Query: 61 IDGLELIRRVRSLDMEQPIFIVLSGYGEFEYARTAIRYGVRHYLLKPVVDAEWDKVLTDI 120 IDGLELIR F++LSGY +F YA+ A+ Y +YLLKP+ D E D V+T + Sbjct: 61 IDGLELIRLSTENLKSTAKFVILSGYDDFSYAKRAMLYNASNYLLKPLDDVELDSVVTKL 120 Query: 121 TDELELRLKQTMQQSMLASRLLPLAIARMLEGHWAEP--------------DEE---TAE 163 ++++ K+T + S + +I R++ G +P DEE Sbjct: 121 AEQIKKERKETENINKQLSFIANQSIIRLINGD-NKPSLIGRVGMLLDIAEDEEFRCILF 179 Query: 164 QMDRLDEEAAGWTYVHVEGHSSNITELCRELAGPAGA--MFIDLPGDQAGLVVESSSPAA 221 ++D D G + + + + + PA +F D G + G++ P Sbjct: 180 EIDSADSWVQGEERTELNINRTTPARVIEDALDPAFQFRIFEDGKG-RIGIIASEKMPFF 238 Query: 222 GLAEELYAR--LTRSGVKGSV---SIGPSVRSLRELPVSYREAAXXXAAARHYFYSDGCG 276 EE L + + G V SI S + L + +Y++A A FYS G Sbjct: 239 NTLEEFTKSLLLQLNQIFGDVVYASISDSEKGLSLISKTYKQALF---AIGFKFYSPGKS 295 Query: 277 PVDSASEAEGQVNYTLPSAELIEEIISAVERLHEQKAAEKLGELFSVFRENRTDPGVVQM 336 + + +N+ + E ++ + + + LF F EN + P ++ Sbjct: 296 LISYENVKGLNLNFEM-CTEYYNALLDFIRANRVEDIEPVVCRLFKNFSENHSAPQIIIS 354 Query: 337 TGMDIMLRSMELLKEFGGADDQWIGM-LDFFRT-EPKSLEDLQITLETALGTSMNYIRQH 394 M+ + ++L+ E GG +++ + L F +T E ++ +LQ ++ ++I Sbjct: 355 YLMNFQMELVKLIMEIGGDLKEFLTLALGFQKTAEHLNMSNLQGEFLKQCLSAASHINGF 414 Query: 395 KERNSEHPLIRVECFLREHYSEHLTVKEIAEHFYINPVYLGQAFIKKHGISILEYIHNLR 454 K+ N + + V+ +++++Y + + +KE+A HFY+N VYLGQ F K G+ +Y++N+R Sbjct: 415 KQGNPQFIVCEVKNYIKQNYCKDIKLKEVARHFYMNSVYLGQLFKKVSGVQFNDYLNNVR 474 Query: 455 IEAAKKRLIDTHDTVRSIVESVGYVHYHHFLREFEKRTALKPVQFRA 501 +E AKK L T V I +VGY +FL +F+ T+L P F+ Sbjct: 475 VEEAKKLLQRTDMKVSEISSAVGYNDPKYFLSKFKAITSLPPSAFKT 521 >B1D4N0.1 B1D4N0_9BACL Two component transcriptional regulator, AraC family Length = 507 Score = 182 bits (461), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 155/527 (29%), Positives = 243/527 (46%), Gaps = 44/527 (8%) Query: 1 MYKVVLADDETFALEGLRTLTDWEELGFEVCGACENGEEALAAIIRSSPDLVITDIRMPE 60 MY V++ DDE F LEG RT+ DWE GF +C A +G+EAL + R PDLV TD++MP Sbjct: 1 MYNVLVVDDEPFMLEGWRTMVDWESHGFRLCWAVSDGKEALEVMEREVPDLVFTDLQMPV 60 Query: 61 IDGLELIRRVR-SLDMEQPIFIVLSGYGEFEYARTAIRYGVRHYLLKPVVDAEWDKVLTD 119 +DGLELIR+++ S +++ +++SGY F+ A+ AIR+ + YLLKP+++ E + + Sbjct: 61 MDGLELIRQMKQSQGLKEIKTVIVSGYSRFDAAQFAIRHQIEQYLLKPLIEEE----IHE 116 Query: 120 ITDELELRLKQTMQQSMLASRLLPLAIARMLEGHWAEPDEETAEQMDRLDEEAAGWTYVH 179 + D L + + Q AS L + AR L+ E + L E + Sbjct: 117 LLDSLRVDMDQRNSMEASASESLSIVFARALQEESEESRTALTSHLGCLPEAMGRLIVLD 176 Query: 180 VEGHSSNIT--ELCRELAG-PAGAMFIDLPGDQAGLVVES---SSPAAGL---AEELYAR 230 + T E+ EL+G PAG ++ P GL+V S S AGL + + R Sbjct: 177 AKAGKPGPTMEEMEIELSGLPAGFGCMEEPSGSIGLLVWSRQQDSMEAGLDSDTKRVIER 236 Query: 231 LTRSGVKGSVSIGPSVRSLRELPVSYREAAXXXAAARHYFYSDGCGPVDSASEAEGQVNY 290 L+ ++ + + R+L R+ R G V Q ++ Sbjct: 237 LSGQWPSCTIYVSGETQGWRQL----RQLYTQLQELRSRGLYKGRAGVFWYEHRHEQAHW 292 Query: 291 TL-PSAELIEEIISAVERLHEQKAAEKLGELFSVFRENRTDPGVVQMTGMDIMLRSMELL 349 +A E +++AVER + A E+ F E P + + + Sbjct: 293 RWEDAASRAEAVLTAVER-NNVAAIEQATSALVEFVEGTHKPASSLTASLSYLQGGLLRA 351 Query: 350 KEFGGAD----DQWI----GMLDFFRTEPKSLEDLQITLETALGTSMNYIRQHKERNSEH 401 G D +WI G+L R E L A G Q E N++ Sbjct: 352 YHKAGGDPANPPEWILPPYGLLGNVR------EQLSAACLQAAG-------QIDELNNKR 398 Query: 402 PLIRVE---CFLREHYSEHLTVKEIAEHFYINPVYLGQAFIKKHGISILEYIHNLRIEAA 458 P R++ ++ +HY E L +K++AE F +NPVY+GQ F + G +Y+H LRI+ A Sbjct: 399 PEGRLQEAVAYVTDHYREKLQLKDLAEQFRLNPVYMGQQFKRITGYCFNDYMHLLRIKEA 458 Query: 459 KKRLIDTHDTVRSIVESVGYVHYHHFLREFEKRTALKPVQFRAQAQG 505 KK L+ T V SI +GY +F F+ T + P +++ +G Sbjct: 459 KKLLLRTDLKVSSIANELGYHSTEYFGSVFKSMTKVSPSAYKSNQRG 505 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.135 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,893,006,722 Number of extensions: 118370658 Number of successful extensions: 410858 Number of sequences better than 1.0e-05: 6311 Number of HSP's gapped: 421131 Number of HSP's successfully gapped: 6684 Length of query: 506 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 366 Effective length of database: 1,741,754,103 Effective search space: 637482001698 Effective search space used: 637482001698 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)