BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0210.0006.p (339 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value O83007.2 O83007_AERPU Exo-beta-1,4-xylanase 484 e-135 O69231.1 XYNB_PAEBA Endo-1,4-beta-xylanase B EC=3.2.1.8 478 e-133 B6VF01.1 B6VF01_9BACL Xylanase EC=3.2.1.8 (Fragment) 419 e-115 A9QDS0.1 A9QDS0_9BACL XynA2 EC=3.2.1.8 419 e-115 A4IP84.1 A4IP84_GEOTN Intra-cellular xylanase 414 e-114 >O83007.2 O83007_AERPU Exo-beta-1,4-xylanase Length = 333 Score = 484 bits (1247), Expect = e-135, Method: Compositional matrix adjust. Identities = 221/326 (67%), Positives = 271/326 (83%) Query: 6 SEIPALHEMFREAFKIGAAVSTGIIAAQGPFIARHYNSITAENEMKPALVQPEEGEFTFE 65 +EIP+LH + FKIGAAV T ++ ++G FIA+H+NSITAEN+MK + PEE ++FE Sbjct: 3 TEIPSLHAAYANTFKIGAAVHTRMLQSEGEFIAKHFNSITAENQMKFEEIHPEEDRYSFE 62 Query: 66 AADGIFEFAESHGIGVRGHTLLWHNQTGDWMFREAEGGTCSREQLLARLQTHINTVVGRY 125 AAD I +FA + GIGVRGHTL+WHNQT W+F + G SRE LL+RL+ HI+TVVGRY Sbjct: 63 AADQIVDFAVAQGIGVRGHTLVWHNQTSKWVFEDTSGAPASRELLLSRLKQHIDTVVGRY 122 Query: 126 RGRGYAWDVVNEAIEDKTDQYLRDTRWLEIIGEDYLRQAFEMAHQADPDALLFYNDYNET 185 +G+ YAWDVVNEA+EDKTD ++RDT+WLE++GEDYL QAF MAH+ADP+ALLFYNDYNET Sbjct: 123 KGQIYAWDVVNEAVEDKTDLFMRDTKWLELVGEDYLLQAFSMAHEADPNALLFYNDYNET 182 Query: 186 DPVKSGKIYKLVRSLLDQNTPIHGIGMQGHWNIYGPSIEEIRNALKLYASLGLKIHVTEL 245 DPVK KIY LVRSLLD+ P+HGIG+QGHWNI+GPSIEEIR A++ YASL +++HVTEL Sbjct: 183 DPVKREKIYNLVRSLLDKGAPVHGIGLQGHWNIHGPSIEEIRMAIERYASLDVQLHVTEL 242 Query: 246 DLSVFRHDDKRTDLKAPTDEMLKLQEERYAEIFALLLEFRDSIDSVTFWGVADDYTWLDG 305 D+SVFRH+D+RTDL APT EM +LQE RY EIF L E++ SI SVTFWGVAD+YTWLD Sbjct: 243 DMSVFRHEDRRTDLTAPTSEMAELQELRYEEIFNLFREYKSSITSVTFWGVADNYTWLDH 302 Query: 306 FPVRGRKNWPFLFDEQKQPKASFARL 331 FPVRGRKNWPF+FD+Q QPK SF R+ Sbjct: 303 FPVRGRKNWPFVFDQQLQPKVSFWRI 328 >O69231.1 XYNB_PAEBA Endo-1,4-beta-xylanase B EC=3.2.1.8 Length = 332 Score = 478 bits (1231), Expect = e-133, Method: Compositional matrix adjust. Identities = 221/327 (67%), Positives = 270/327 (82%) Query: 5 NSEIPALHEMFREAFKIGAAVSTGIIAAQGPFIARHYNSITAENEMKPALVQPEEGEFTF 64 ++EIP+L + +FKIGAAV T ++ +G FIA+HYNS+TAEN+MK V P E E+TF Sbjct: 2 STEIPSLSASYANSFKIGAAVHTRMLQTEGEFIAKHYNSVTAENQMKFEEVHPREHEYTF 61 Query: 65 EAADGIFEFAESHGIGVRGHTLLWHNQTGDWMFREAEGGTCSREQLLARLQTHINTVVGR 124 EAAD I +FA + GIGVRGHTL+WHNQT WMF +A GGT SRE +L+RL+ HI+TVVGR Sbjct: 62 EAADEIVDFAVARGIGVRGHTLVWHNQTPAWMFEDASGGTASREMMLSRLKQHIDTVVGR 121 Query: 125 YRGRGYAWDVVNEAIEDKTDQYLRDTRWLEIIGEDYLRQAFEMAHQADPDALLFYNDYNE 184 Y+ + YAWDVVNEAIEDKTD +RDT+WL ++GEDYL QAF MAH+ADP+ALLFYNDYNE Sbjct: 122 YKDQIYAWDVVNEAIEDKTDLIMRDTKWLRLLGEDYLVQAFNMAHEADPNALLFYNDYNE 181 Query: 185 TDPVKSGKIYKLVRSLLDQNTPIHGIGMQGHWNIYGPSIEEIRNALKLYASLGLKIHVTE 244 TDPVK KIY LVRSLLDQ P+HGIGMQGHWNI+GPS++EIR A++ YASL +++HVTE Sbjct: 182 TDPVKREKIYNLVRSLLDQGAPVHGIGMQGHWNIHGPSMDEIRQAIERYASLDVQLHVTE 241 Query: 245 LDLSVFRHDDKRTDLKAPTDEMLKLQEERYAEIFALLLEFRDSIDSVTFWGVADDYTWLD 304 LDLSVFRH+D+RTDL PT EM +LQ++RY +IF L E+R +I SVTFWGVAD+YTWLD Sbjct: 242 LDLSVFRHEDQRTDLTEPTAEMAELQQKRYEDIFGLFREYRSNITSVTFWGVADNYTWLD 301 Query: 305 GFPVRGRKNWPFLFDEQKQPKASFARL 331 FPVRGRKNWPF+FD + QPK SF R+ Sbjct: 302 NFPVRGRKNWPFVFDTELQPKDSFWRI 328 >B6VF01.1 B6VF01_9BACL Xylanase EC=3.2.1.8 (Fragment) Length = 331 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 192/321 (59%), Positives = 246/321 (76%) Query: 11 LHEMFREAFKIGAAVSTGIIAAQGPFIARHYNSITAENEMKPALVQPEEGEFTFEAADGI 70 L E F+E F IGAAV+ + +Q + H+NS+TAENEMK + P E +TFEAAD + Sbjct: 3 LREAFKEQFLIGAAVNPVTLDSQRDLLIEHFNSVTAENEMKFERLHPTEDRYTFEAADRM 62 Query: 71 FEFAESHGIGVRGHTLLWHNQTGDWMFREAEGGTCSREQLLARLQTHINTVVGRYRGRGY 130 A+++G+GVRGHTL+WHNQT W+F +G R LLAR+++HINTVV RY+G Y Sbjct: 63 VALAKANGMGVRGHTLVWHNQTPTWVFENEDGSQTDRVTLLARMKSHINTVVSRYQGELY 122 Query: 131 AWDVVNEAIEDKTDQYLRDTRWLEIIGEDYLRQAFEMAHQADPDALLFYNDYNETDPVKS 190 AWDVVNEA+ D + LR ++WL+IIGED++ +AFE AH+ADP+ALLFYNDYNE DPVKS Sbjct: 123 AWDVVNEAVSDSGSELLRPSKWLDIIGEDFIAKAFEYAHEADPEALLFYNDYNEADPVKS 182 Query: 191 GKIYKLVRSLLDQNTPIHGIGMQGHWNIYGPSIEEIRNALKLYASLGLKIHVTELDLSVF 250 KIY LV+SLL+Q PIHGIG+Q HW++Y PS++ IR A++ YASLG+K+H+TELD+S+F Sbjct: 183 EKIYTLVKSLLEQGVPIHGIGLQAHWSLYHPSLDNIRVAIEKYASLGVKLHITELDVSMF 242 Query: 251 RHDDKRTDLKAPTDEMLKLQEERYAEIFALLLEFRDSIDSVTFWGVADDYTWLDGFPVRG 310 DD+RTDL APT+EML LQ ERY + F L E+ + I SVTFWG ADDYTWLD FPVRG Sbjct: 243 AFDDRRTDLTAPTEEMLALQAERYGQFFRLFQEYSEYITSVTFWGAADDYTWLDHFPVRG 302 Query: 311 RKNWPFLFDEQKQPKASFARL 331 RKNWPFLFD + QPK S++ + Sbjct: 303 RKNWPFLFDAKHQPKPSYSEV 323 >A9QDS0.1 A9QDS0_9BACL XynA2 EC=3.2.1.8 Length = 341 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 190/328 (57%), Positives = 250/328 (76%) Query: 6 SEIPALHEMFREAFKIGAAVSTGIIAAQGPFIARHYNSITAENEMKPALVQPEEGEFTFE 65 SE+PAL ++++ F IGAAV+ IA+Q + HYNS+TAEN+MK V P+EG++TFE Sbjct: 5 SELPALRSVYKDYFDIGAAVNLTTIASQKDVLTAHYNSLTAENDMKFERVHPQEGQYTFE 64 Query: 66 AADGIFEFAESHGIGVRGHTLLWHNQTGDWMFREAEGGTCSREQLLARLQTHINTVVGRY 125 AAD I +FA ++ + +RGHTL+WHNQT DW+F+ A G RE LLAR+++HI VVGRY Sbjct: 65 AADKIADFAAANAMKLRGHTLVWHNQTPDWIFQNANGSPVDRETLLARMKSHIEKVVGRY 124 Query: 126 RGRGYAWDVVNEAIEDKTDQYLRDTRWLEIIGEDYLRQAFEMAHQADPDALLFYNDYNET 185 +G Y WDVVNE I+DK +LR+++WL + GED++ +AFE AH ADP ALLFYNDYNE Sbjct: 125 KGIIYGWDVVNEVIDDKNGVWLRESKWLNLAGEDFIAKAFEYAHAADPKALLFYNDYNEC 184 Query: 186 DPVKSGKIYKLVRSLLDQNTPIHGIGMQGHWNIYGPSIEEIRNALKLYASLGLKIHVTEL 245 P K KI ++V+SL + PIHGIG+QGHWN+ GPS+ EIR A++ YA+ GLK+ VTEL Sbjct: 185 IPEKRDKIIRIVQSLQAKQVPIHGIGLQGHWNLNGPSLAEIREAIERYAATGLKLQVTEL 244 Query: 246 DLSVFRHDDKRTDLKAPTDEMLKLQEERYAEIFALLLEFRDSIDSVTFWGVADDYTWLDG 305 D+SVF HDDKRTDL PT +ML+ Q ERY ++F L E++++I +VTFWG ADDYTWLD Sbjct: 245 DISVFDHDDKRTDLTEPTADMLERQAERYGQVFELFREYKEAITAVTFWGAADDYTWLDN 304 Query: 306 FPVRGRKNWPFLFDEQKQPKASFARLAE 333 FPVRGRKNWPF+FD +PKASF ++ + Sbjct: 305 FPVRGRKNWPFVFDANHEPKASFRKITD 332 >A4IP84.1 A4IP84_GEOTN Intra-cellular xylanase Length = 333 Score = 414 bits (1063), Expect = e-114, Method: Compositional matrix adjust. Identities = 189/331 (57%), Positives = 251/331 (75%) Query: 4 ANSEIPALHEMFREAFKIGAAVSTGIIAAQGPFIARHYNSITAENEMKPALVQPEEGEFT 63 + +P+L E+F F+IGAAV+ I +Q + H NS+TAEN MK +QPEEG FT Sbjct: 3 VSQSLPSLREVFANDFRIGAAVNPVTIESQKQLLISHVNSLTAENHMKFEHLQPEEGRFT 62 Query: 64 FEAADGIFEFAESHGIGVRGHTLLWHNQTGDWMFREAEGGTCSREQLLARLQTHINTVVG 123 F+ AD I +FA SH + VRGHTL+WHNQT DW+F++ +G SR+ LL R+++HI+ VV Sbjct: 63 FDIADRIVDFARSHHMAVRGHTLVWHNQTPDWVFQDGQGHFISRDVLLERMKSHISAVVR 122 Query: 124 RYRGRGYAWDVVNEAIEDKTDQYLRDTRWLEIIGEDYLRQAFEMAHQADPDALLFYNDYN 183 RY+G+ Y WDVVNEA+ D+ ++LR ++W +IIG+D++ QAF AH+ADPDALLFYNDYN Sbjct: 123 RYKGKVYCWDVVNEAVADEGSEWLRSSKWRQIIGDDFIEQAFLCAHEADPDALLFYNDYN 182 Query: 184 ETDPVKSGKIYKLVRSLLDQNTPIHGIGMQGHWNIYGPSIEEIRNALKLYASLGLKIHVT 243 E P K KIY LV+SL D+ PIHGIGMQ HW++ PS++EIR A++ YASL + +H+T Sbjct: 183 ECFPKKREKIYTLVKSLRDKGIPIHGIGMQAHWSLTRPSLDEIRAAIERYASLDVVLHIT 242 Query: 244 ELDLSVFRHDDKRTDLKAPTDEMLKLQEERYAEIFALLLEFRDSIDSVTFWGVADDYTWL 303 ELD+S+F D R DL APT+EM++ Q ERY +IF L E+RD I+SVTFWG+ADDYTWL Sbjct: 243 ELDVSMFEFHDHRKDLAAPTNEMIERQAERYEQIFTLFKEYRDVIESVTFWGMADDYTWL 302 Query: 304 DGFPVRGRKNWPFLFDEQKQPKASFARLAEL 334 D FPV+GRKNWPFLFDEQ +PK++F R+A + Sbjct: 303 DHFPVQGRKNWPFLFDEQHEPKSAFWRVASI 333 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,099,802,244 Number of extensions: 90200705 Number of successful extensions: 211080 Number of sequences better than 1.0e-05: 1217 Number of HSP's gapped: 208170 Number of HSP's successfully gapped: 1223 Length of query: 339 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 203 Effective length of database: 1,779,438,163 Effective search space: 361225947089 Effective search space used: 361225947089 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)