BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0207.0012.p (202 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C2XR14.1 C2XR14_BACCE Camelysin; Metallo peptidase; MEROPS famil... 140 5e-32 C2SH12.1 C2SH12_BACCE Camelysin; Metallo peptidase; MEROPS famil... 138 3e-31 A9VK03.1 A9VK03_BACWK Camelysin 138 3e-31 C3A307.1 C3A307_BACMY Camelysin; Metallo peptidase; MEROPS famil... 138 3e-31 C2PT08.1 C2PT08_BACCE Camelysin; Metallo peptidase; MEROPS famil... 138 3e-31 >C2XR14.1 C2XR14_BACCE Camelysin; Metallo peptidase; MEROPS family M73 Length = 195 Score = 140 bits (354), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 84/157 (53%), Positives = 102/157 (64%), Gaps = 11/157 (7%) Query: 42 GTLDLNSDPSVIVDIQNLKPGDTVTKTFKLKNDGTLDIGSILLKTTTEVTDTLGDNNGVD 101 GTLDL ++PS +VD+ NLKPGDT+ + FKL+N G+LDI +LLKT +V+D GDN D Sbjct: 42 GTLDLAANPSTVVDVSNLKPGDTIKRDFKLENKGSLDIKKVLLKTDYKVSDAKGDNKD-D 100 Query: 102 LSKFIKVKFLKNNDKGTIISPEVVVYETTLDALKGQTPDLVKN--TGWDQILTEADGIKA 159 K IKV FLKN DK E +V ETTLD LKG T V N + W + GI A Sbjct: 101 FGKHIKVTFLKNVDK-----HETIVKETTLDKLKGDTLTAVDNDLSAW---FWDEKGISA 152 Query: 160 QSSDSFSVKFEFVDTGEAQNYFQKDKLKLTWNFEAKQ 196 SD F+VKFEFVD + QN FQ DKL LTW F+A+Q Sbjct: 153 GKSDKFTVKFEFVDNKKDQNEFQGDKLNLTWTFDAQQ 189 >C2SH12.1 C2SH12_BACCE Camelysin; Metallo peptidase; MEROPS family M73 Length = 195 Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 85/158 (53%), Positives = 100/158 (63%), Gaps = 11/158 (6%) Query: 42 GTLDLNSDPSVIVDIQNLKPGDTVTKTFKLKNDGTLDIGSILLKTTTEVTDTLGDNNGVD 101 GTLDL+ +PS +V++ NLKPGDT+ K FKL+N G+LDI +LLKT V DT DN D Sbjct: 42 GTLDLSLNPSTVVNVSNLKPGDTIEKEFKLENKGSLDIKKVLLKTDYSVEDTKKDNKD-D 100 Query: 102 LSKFIKVKFLKNNDKGTIISPEVVVYETTLDALKGQTPDLVKN--TGWDQILTEADGIKA 159 K IKV FLKN DK E +V ETTLD LKG T V N W + GI A Sbjct: 101 FGKHIKVTFLKNVDK-----HETIVKETTLDKLKGDTLTAVNNDLAAW---FWDEKGISA 152 Query: 160 QSSDSFSVKFEFVDTGEAQNYFQKDKLKLTWNFEAKQG 197 SD F VKFEFVD + QN FQ DKL+LTW F+A+QG Sbjct: 153 GKSDKFKVKFEFVDNKKDQNEFQGDKLQLTWTFDAQQG 190 >A9VK03.1 A9VK03_BACWK Camelysin Length = 195 Score = 138 bits (347), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 85/158 (53%), Positives = 100/158 (63%), Gaps = 11/158 (6%) Query: 42 GTLDLNSDPSVIVDIQNLKPGDTVTKTFKLKNDGTLDIGSILLKTTTEVTDTLGDNNGVD 101 GTLDL+ +PS +V++ NLKPGDT+ K FKL+N G+LDI +LLKT V DT DN D Sbjct: 42 GTLDLSLNPSTVVNVSNLKPGDTIEKEFKLENKGSLDIKKVLLKTDYNVEDTKKDNKD-D 100 Query: 102 LSKFIKVKFLKNNDKGTIISPEVVVYETTLDALKGQTPDLVKN--TGWDQILTEADGIKA 159 K IKV FLKN DK E +V ETTLD LKG T V N W + GI A Sbjct: 101 FGKHIKVTFLKNVDK-----HETIVKETTLDKLKGDTLTAVNNDLAAW---FWDEKGISA 152 Query: 160 QSSDSFSVKFEFVDTGEAQNYFQKDKLKLTWNFEAKQG 197 SD F VKFEFVD + QN FQ DKL+LTW F+A+QG Sbjct: 153 GKSDKFKVKFEFVDNKKDQNEFQGDKLQLTWTFDAQQG 190 >C3A307.1 C3A307_BACMY Camelysin; Metallo peptidase; MEROPS family M73 Length = 195 Score = 138 bits (347), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 85/158 (53%), Positives = 100/158 (63%), Gaps = 11/158 (6%) Query: 42 GTLDLNSDPSVIVDIQNLKPGDTVTKTFKLKNDGTLDIGSILLKTTTEVTDTLGDNNGVD 101 GTLDL+ +PS +V++ NLKPGDT+ K FKL+N G+LDI +LLKT V DT DN D Sbjct: 42 GTLDLSLNPSTVVNVSNLKPGDTIEKEFKLENKGSLDIKKVLLKTDYNVEDTKKDNKD-D 100 Query: 102 LSKFIKVKFLKNNDKGTIISPEVVVYETTLDALKGQTPDLVKN--TGWDQILTEADGIKA 159 K IKV FLKN DK E +V ETTLD LKG T V N W + GI A Sbjct: 101 FGKHIKVTFLKNVDK-----HETIVKETTLDKLKGDTLTAVNNDLAAW---FWDEKGISA 152 Query: 160 QSSDSFSVKFEFVDTGEAQNYFQKDKLKLTWNFEAKQG 197 SD F VKFEFVD + QN FQ DKL+LTW F+A+QG Sbjct: 153 GKSDKFKVKFEFVDNKKDQNEFQGDKLQLTWTFDAQQG 190 >C2PT08.1 C2PT08_BACCE Camelysin; Metallo peptidase; MEROPS family M73 Length = 195 Score = 138 bits (347), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 85/158 (53%), Positives = 100/158 (63%), Gaps = 11/158 (6%) Query: 42 GTLDLNSDPSVIVDIQNLKPGDTVTKTFKLKNDGTLDIGSILLKTTTEVTDTLGDNNGVD 101 GTLDL+ +PS +V++ NLKPGDT+ K FKL+N G+LDI +LLKT V DT DN D Sbjct: 42 GTLDLSLNPSTVVNVSNLKPGDTIEKEFKLENKGSLDIKKVLLKTDYNVEDTKKDNKD-D 100 Query: 102 LSKFIKVKFLKNNDKGTIISPEVVVYETTLDALKGQTPDLVKN--TGWDQILTEADGIKA 159 K IKV FLKN DK E +V ETTLD LKG T V N W + GI A Sbjct: 101 FGKHIKVTFLKNVDK-----HETIVKETTLDKLKGDTLTAVNNDLAAW---FWDEKGISA 152 Query: 160 QSSDSFSVKFEFVDTGEAQNYFQKDKLKLTWNFEAKQG 197 SD F VKFEFVD + QN FQ DKL+LTW F+A+QG Sbjct: 153 GKSDKFKVKFEFVDNKKDQNEFQGDKLQLTWTFDAQQG 190 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.311 0.133 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 969,295,367 Number of extensions: 37145398 Number of successful extensions: 81714 Number of sequences better than 1.0e-05: 275 Number of HSP's gapped: 81329 Number of HSP's successfully gapped: 275 Length of query: 202 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 73 Effective length of database: 1,845,385,268 Effective search space: 134713124564 Effective search space used: 134713124564 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 128 (53.9 bits)