BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0207.0011.p (199 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q8ENF7.1 Q8ENF7_OCEIH Signal peptidase I EC=3.4.21.89 163 7e-39 A7GMG7.1 A7GMG7_BACCN Peptidase S26B, signal peptidase 162 2e-38 C2PT07.1 C2PT07_BACCE Signal peptidase SipW; Serine peptidase; M... 161 3e-38 C2ZLK0.1 C2ZLK0_BACCE Signal peptidase SipW; Serine peptidase; M... 160 5e-38 C2Z4Y6.1 C2Z4Y6_BACCE Signal peptidase SipW; Serine peptidase; M... 160 5e-38 >Q8ENF7.1 Q8ENF7_OCEIH Signal peptidase I EC=3.4.21.89 Length = 197 Score = 163 bits (413), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 75/123 (60%), Positives = 98/123 (79%), Gaps = 2/123 (1%) Query: 33 SRASGGEPALFGYEIKTVLSGSMEPGIQTGSIVALKPGGDMTRFKKGDVITFMSEDNILI 92 ++ASGGEP LFG + KTVLSGSMEPGIQTGS++A++ GGDMTRF++ DVITFM ED+ L+ Sbjct: 34 TKASGGEPELFGLQFKTVLSGSMEPGIQTGSVIAVETGGDMTRFQEDDVITFMEEDSKLV 93 Query: 93 THRIVDASAKNAAGEVVYRTKGDNNDAVDMTPVSSGNVVAEYTGVTVPYIGYAMNFAASK 152 THRI + N ++Y TKGDNN+A D+ PV + NVVAEYTG TVPY+GY ++FA ++ Sbjct: 94 THRITEVL--NNGEHIMYETKGDNNNAADINPVFAENVVAEYTGFTVPYLGYLVSFAQTQ 151 Query: 153 AGS 155 G+ Sbjct: 152 NGA 154 >A7GMG7.1 A7GMG7_BACCN Peptidase S26B, signal peptidase Length = 191 Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 76/158 (48%), Positives = 109/158 (68%), Gaps = 2/158 (1%) Query: 6 LIKKILSHTLSXXXXXXXXXXXXXXXXSRASGGEPALFGYEIKTVLSGSMEPGIQTGSIV 65 + KI+S+ +S S+ASGGEP + GY+ KTVLSGSMEP TGS++ Sbjct: 3 FVWKIMSNVISFVLFALMVFLAFVVISSKASGGEPTIMGYQFKTVLSGSMEPTFLTGSVI 62 Query: 66 ALKPGGDMTRFKKGDVITFMSEDNILITHRIVDASAKNAAGEVVYRTKGDNNDAVDMTPV 125 A++P D ++++KGDVITF D ++THRI+D +NA G+V+Y TKGDNN+ DM PV Sbjct: 63 AIEPTKDGSKYQKGDVITFKESDTKIVTHRIID--VQNANGKVMYVTKGDNNNGPDMKPV 120 Query: 126 SSGNVVAEYTGVTVPYIGYAMNFAASKAGSVVLMIVPG 163 + NV+ +Y +TVPY+GY +N+A SKAG+ +L+I+PG Sbjct: 121 LAENVIGKYEDITVPYVGYLLNYANSKAGAALLLIIPG 158 >C2PT07.1 C2PT07_BACCE Signal peptidase SipW; Serine peptidase; MEROPS family S26B Length = 204 Score = 161 bits (408), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 77/162 (47%), Positives = 113/162 (69%), Gaps = 2/162 (1%) Query: 2 ETDMLIKKILSHTLSXXXXXXXXXXXXXXXXSRASGGEPALFGYEIKTVLSGSMEPGIQT 61 ET LI K++S+ +S S+ASGG+P + GY+ K+VLSGSMEP T Sbjct: 14 ETMKLIWKVISNVISFVLFAVMVCLAFVVISSKASGGDPTVMGYQFKSVLSGSMEPTFLT 73 Query: 62 GSIVALKPGGDMTRFKKGDVITFMSEDNILITHRIVDASAKNAAGEVVYRTKGDNNDAVD 121 GSI+A++P D +++KKGDVITF +D+ +ITHRI+ K+ G+V+Y TKGDNN+ D Sbjct: 74 GSIIAIEPTKDGSKYKKGDVITFKEKDDKIITHRII--GVKDTNGKVMYETKGDNNNGPD 131 Query: 122 MTPVSSGNVVAEYTGVTVPYIGYAMNFAASKAGSVVLMIVPG 163 + PV + NV+ +Y +TVPY+GY +N+A+SKAG+ +L+I+PG Sbjct: 132 LAPVLAENVIGKYADITVPYVGYGLNYASSKAGAALLLIIPG 173 >C2ZLK0.1 C2ZLK0_BACCE Signal peptidase SipW; Serine peptidase; MEROPS family S26B Length = 190 Score = 160 bits (405), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 76/158 (48%), Positives = 111/158 (70%), Gaps = 2/158 (1%) Query: 6 LIKKILSHTLSXXXXXXXXXXXXXXXXSRASGGEPALFGYEIKTVLSGSMEPGIQTGSIV 65 LI K++S+ +S S+ASGG+P + GY+ K+VLSGSMEP TGSI+ Sbjct: 4 LIWKVISNVISFVLFAVMVCLAFVVISSKASGGDPTVMGYQFKSVLSGSMEPTFLTGSII 63 Query: 66 ALKPGGDMTRFKKGDVITFMSEDNILITHRIVDASAKNAAGEVVYRTKGDNNDAVDMTPV 125 A++P D ++++KGDVITF +DN ++THRI+ K+ G+V+Y TKGDNN+ D+ PV Sbjct: 64 AIEPTKDGSKYQKGDVITFKEKDNKIVTHRII--GVKDINGKVMYETKGDNNNGPDLAPV 121 Query: 126 SSGNVVAEYTGVTVPYIGYAMNFAASKAGSVVLMIVPG 163 + NVV +Y +TVPY+GY +N+A+SKAGS +L+I+PG Sbjct: 122 LAENVVGKYADITVPYLGYGLNYASSKAGSALLLIIPG 159 >C2Z4Y6.1 C2Z4Y6_BACCE Signal peptidase SipW; Serine peptidase; MEROPS family S26B Length = 190 Score = 160 bits (405), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 76/158 (48%), Positives = 111/158 (70%), Gaps = 2/158 (1%) Query: 6 LIKKILSHTLSXXXXXXXXXXXXXXXXSRASGGEPALFGYEIKTVLSGSMEPGIQTGSIV 65 LI K++S+ +S S+ASGG+P + GY+ K+VLSGSMEP TGSI+ Sbjct: 4 LIWKVISNVISFVLFAVMVCLAFVVISSKASGGDPTVMGYQFKSVLSGSMEPTFLTGSII 63 Query: 66 ALKPGGDMTRFKKGDVITFMSEDNILITHRIVDASAKNAAGEVVYRTKGDNNDAVDMTPV 125 A++P D ++++KGDVITF +DN ++THRI+ K+ G+V+Y TKGDNN+ D+ PV Sbjct: 64 AIEPTKDGSKYQKGDVITFKEKDNKIVTHRII--GVKDINGKVMYETKGDNNNGPDLAPV 121 Query: 126 SSGNVVAEYTGVTVPYIGYAMNFAASKAGSVVLMIVPG 163 + NVV +Y +TVPY+GY +N+A+SKAGS +L+I+PG Sbjct: 122 LAENVVGKYADITVPYLGYGLNYASSKAGSALLLIIPG 159 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.313 0.131 0.362 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 950,578,181 Number of extensions: 32901534 Number of successful extensions: 56683 Number of sequences better than 1.0e-05: 151 Number of HSP's gapped: 56707 Number of HSP's successfully gapped: 151 Length of query: 199 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 70 Effective length of database: 1,845,385,268 Effective search space: 129176968760 Effective search space used: 129176968760 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 127 (53.5 bits)