BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0207.0008.p
         (70 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K4E4.1 B3K4E4_9BACI Putative uncharacterized protein                 81   3e-14
B1DE17.1 B1DE17_9BACL Putative uncharacterized protein                 74   5e-12
Q2B492.1 Q2B492_9BACI Putative uncharacterized protein                 55   2e-06
A6CJR0.1 A6CJR0_9BACI Putative uncharacterized protein                 55   3e-06
C1PA45.1 C1PA45_BACCO Putative uncharacterized protein                 53   7e-06

>B3K4E4.1 B3K4E4_9BACI Putative uncharacterized protein
          Length = 76

 Score = 81.3 bits (199), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/59 (71%), Positives = 49/59 (83%), Gaps = 1/59 (1%)

Query: 13 DHPEQYPTENPSLFDLDESERNVDPIPVEDLNLEKQEEKDKEGT-KHRSSSDKKYHTGF 70
          DHPEQYPTE  SLFD  ESE++VDPIP+ED  LE+QEEK ++GT K RSSSD KYH+GF
Sbjct: 18 DHPEQYPTEQESLFDKFESEQHVDPIPMEDARLERQEEKQRDGTSKKRSSSDDKYHSGF 76


>B1DE17.1 B1DE17_9BACL Putative uncharacterized protein
          Length = 76

 Score = 73.6 bits (179), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 41/70 (58%), Positives = 50/70 (71%), Gaps = 1/70 (1%)

Query: 1  MDKDNKLQGDKRDHPEQYPTENPSLFDLDESERNVDPIPVEDLNLEKQEEKDKEGTKHRS 60
           D+  K QG KRD+PE  PTE  SLFD   SER VDPIPVED  +E+Q+EK+K+ TK  S
Sbjct: 8  ADRRRKQQG-KRDNPEGVPTEKESLFDKYVSERTVDPIPVEDQTIEQQDEKEKDRTKRDS 66

Query: 61 SSDKKYHTGF 70
          SS++KY TG 
Sbjct: 67 SSERKYRTGI 76


>Q2B492.1 Q2B492_9BACI Putative uncharacterized protein
          Length = 86

 Score = 55.1 bits (131), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 44/68 (64%)

Query: 3  KDNKLQGDKRDHPEQYPTENPSLFDLDESERNVDPIPVEDLNLEKQEEKDKEGTKHRSSS 62
          KD K +    D+PEQ+ T+  S++D  + E+NVD IP+EDL  E+ EEK    TK  SSS
Sbjct: 5  KDGKYEQQDMDNPEQFKTDKESIYDKFKEEQNVDTIPLEDLKQEQHEEKMGRNTKDNSSS 64

Query: 63 DKKYHTGF 70
          ++KY+  F
Sbjct: 65 EEKYNADF 72


>A6CJR0.1 A6CJR0_9BACI Putative uncharacterized protein
          Length = 74

 Score = 54.7 bits (130), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/63 (52%), Positives = 46/63 (73%), Gaps = 1/63 (1%)

Query: 5  NKLQG-DKRDHPEQYPTENPSLFDLDESERNVDPIPVEDLNLEKQEEKDKEGTKHRSSSD 63
          NK +G +K D+PEQY  +  S+ D  ESE++VDP+P+ED+  EK EE+ K  TK +SSS+
Sbjct: 7  NKGKGFEKFDNPEQYDKDKESILDKFESEQHVDPLPMEDIREEKIEERKKSNTKDQSSSE 66

Query: 64 KKY 66
          KKY
Sbjct: 67 KKY 69


>C1PA45.1 C1PA45_BACCO Putative uncharacterized protein
          Length = 68

 Score = 53.1 bits (126), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 42/66 (63%)

Query: 1  MDKDNKLQGDKRDHPEQYPTENPSLFDLDESERNVDPIPVEDLNLEKQEEKDKEGTKHRS 60
          M+++ K    K D+PEQ+ TEN  + D   SE+ VDPIP+EDL  EK EEK     K  S
Sbjct: 1  MNENKKKSQRKMDNPEQFATENEDMHDKFMSEQTVDPIPMEDLREEKLEEKTDHDKKTTS 60

Query: 61 SSDKKY 66
          SS+KKY
Sbjct: 61 SSEKKY 66


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.304    0.129    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 485,321,294
Number of extensions: 18347086
Number of successful extensions: 49163
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 49162
Number of HSP's successfully gapped: 5
Length of query: 70
Length of database: 3,060,696,203
Length adjustment: 41
Effective length of query: 29
Effective length of database: 2,674,434,588
Effective search space: 77558603052
Effective search space used: 77558603052
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 126 (53.1 bits)