BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0207.0007.p (184 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K4C5.1 B3K4C5_9BACI Transcriptional regulator PadR family protein 223 7e-57 B7GI50.1 B7GI50_ANOFW Transcriptional regulator PadR-like family 152 1e-35 C3BPB0.1 C3BPB0_9BACI Putative uncharacterized protein 147 6e-34 C3APX1.1 C3APX1_BACMY Putative uncharacterized protein 147 6e-34 C3B7C8.1 C3B7C8_BACMY Putative uncharacterized protein 145 1e-33 >B3K4C5.1 B3K4C5_9BACI Transcriptional regulator PadR family protein Length = 192 Score = 223 bits (567), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 107/182 (58%), Positives = 138/182 (75%) Query: 1 MKMVILGLLLERNMHPYEIKLVMKERTMDRNMKLQMGSLYYAVDKLAQEDHIEAVEVIRS 60 MK+ ILGLLLE + HPYEI++ MK+R MD+ KLQMGSLYYAVD+LA+E +IEAVE I+S Sbjct: 3 MKLAILGLLLEGDHHPYEIRIKMKDRGMDQYTKLQMGSLYYAVDRLAEEGYIEAVETIQS 62 Query: 61 SDRPDKTIYRITDKGKTLFEQLVLQQIKKNDLIFHPFYTTLAFSRHIDPSKVEKLLEERI 120 RPDKTIYRIT+ G+ LFEQL+L++ + + + HP Y L FSRH DP+ + +L+ RI Sbjct: 63 DSRPDKTIYRITESGRKLFEQLLLKKFRDIEPVHHPLYMALPFSRHADPAVLAPILQTRI 122 Query: 121 RETEHQVNYAYQVYEEHIPTVPRSSLHMMYGKYEHSLTELKWLKRLYEDVSARKLNDIGT 180 RE EH+VN AYQ+Y EH VPRS+ H+M G YEH+ T+L WL+RL+ED+ KL IG Sbjct: 123 REAEHRVNQAYQLYVEHQHIVPRSTQHLMIGMYEHAKTDLNWLRRLHEDLVQGKLGTIGE 182 Query: 181 PL 182 PL Sbjct: 183 PL 184 >B7GI50.1 B7GI50_ANOFW Transcriptional regulator PadR-like family Length = 184 Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 77/182 (42%), Positives = 122/182 (67%) Query: 1 MKMVILGLLLERNMHPYEIKLVMKERTMDRNMKLQMGSLYYAVDKLAQEDHIEAVEVIRS 60 +K+VILGLL+E HPYEI+ ++ ER M +KL GSLYYA ++L ++ ++ V+V+R Sbjct: 3 VKLVILGLLMEGEKHPYEIQQIVNERHMKHYIKLAAGSLYYAFEQLEKQGYVAIVDVVRD 62 Query: 61 SDRPDKTIYRITDKGKTLFEQLVLQQIKKNDLIFHPFYTTLAFSRHIDPSKVEKLLEERI 120 S+RPDKTIYRIT+KGK FEQL+L+Q++K++ I Y L+F+ + D KV +LE+R+ Sbjct: 63 SNRPDKTIYRITEKGKQHFEQLLLEQLQKHEHIHRSIYAGLSFAAYADEKKVSAVLEQRL 122 Query: 121 RETEHQVNYAYQVYEEHIPTVPRSSLHMMYGKYEHSLTELKWLKRLYEDVSARKLNDIGT 180 +ET+ Q+ ++E+ P + L+++ G H TE+KWL++L + +KL + G Sbjct: 123 QETKQQLEKLKWIFEQKQPNEYVAKLYVLKGVIMHLETEIKWLEQLINITNNKKLKEKGG 182 Query: 181 PL 182 L Sbjct: 183 SL 184 >C3BPB0.1 C3BPB0_9BACI Putative uncharacterized protein Length = 183 Score = 147 bits (370), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 72/183 (39%), Positives = 116/183 (63%) Query: 1 MKMVILGLLLERNMHPYEIKLVMKERTMDRNMKLQMGSLYYAVDKLAQEDHIEAVEVIRS 60 MK+VILGLLLE + HPYE++ +MKER M+ +K GSLYYA ++L ++ I V+R Sbjct: 1 MKLVILGLLLEGDKHPYEVQHIMKERQMNCYIKYAKGSLYYAFEQLEKQGAIAVTNVVRD 60 Query: 61 SDRPDKTIYRITDKGKTLFEQLVLQQIKKNDLIFHPFYTTLAFSRHIDPSKVEKLLEERI 120 ++RPDKTI+ IT+ G+ F L+L+Q + + I+ P Y+ L+FS D + +LE++ Sbjct: 61 TNRPDKTIFHITETGREFFHTLLLKQFEAKNQIYKPIYSALSFSHFGDEKTIIPILEKKR 120 Query: 121 RETEHQVNYAYQVYEEHIPTVPRSSLHMMYGKYEHSLTELKWLKRLYEDVSARKLNDIGT 180 +T ++ +YE VPR+ L+++ EH EL+WL L++D SA +L++IG Sbjct: 121 DDTIQYLHTMQSIYEHSKENVPRAQLYILNSVIEHITVELRWLNELHKDASAGRLSEIGM 180 Query: 181 PLD 183 ++ Sbjct: 181 NVN 183 >C3APX1.1 C3APX1_BACMY Putative uncharacterized protein Length = 183 Score = 147 bits (370), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 72/183 (39%), Positives = 116/183 (63%) Query: 1 MKMVILGLLLERNMHPYEIKLVMKERTMDRNMKLQMGSLYYAVDKLAQEDHIEAVEVIRS 60 MK+VILGLLLE + HPYE++ +MKER M+ +K GSLYYA ++L ++ I V+R Sbjct: 1 MKLVILGLLLEGDKHPYEVQHIMKERQMNCYIKYAKGSLYYAFEQLEKQGAIAVTNVVRD 60 Query: 61 SDRPDKTIYRITDKGKTLFEQLVLQQIKKNDLIFHPFYTTLAFSRHIDPSKVEKLLEERI 120 ++RPDKTI+ IT+ G+ F L+L+Q + + I+ P Y+ L+FS D + +LE++ Sbjct: 61 TNRPDKTIFHITETGREFFHTLLLKQFEAKNQIYKPIYSALSFSHFGDEKTIIPILEKKR 120 Query: 121 RETEHQVNYAYQVYEEHIPTVPRSSLHMMYGKYEHSLTELKWLKRLYEDVSARKLNDIGT 180 +T ++ +YE VPR+ L+++ EH EL+WL L++D SA +L++IG Sbjct: 121 DDTIQYLHTMQSIYEHSKENVPRAQLYILNSVIEHITVELRWLNELHKDASAGRLSEIGM 180 Query: 181 PLD 183 ++ Sbjct: 181 NVN 183 >C3B7C8.1 C3B7C8_BACMY Putative uncharacterized protein Length = 183 Score = 145 bits (367), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 71/183 (38%), Positives = 116/183 (63%) Query: 1 MKMVILGLLLERNMHPYEIKLVMKERTMDRNMKLQMGSLYYAVDKLAQEDHIEAVEVIRS 60 MK+VILGLLLE + HPYE++ +MKER M+ +K GSLYYA ++L ++ I V+R Sbjct: 1 MKLVILGLLLEGDKHPYEVQHIMKERQMNCYIKYAKGSLYYAFEQLEKQGAIAVTNVVRD 60 Query: 61 SDRPDKTIYRITDKGKTLFEQLVLQQIKKNDLIFHPFYTTLAFSRHIDPSKVEKLLEERI 120 ++RPDKTI+ IT+ G+ F L+L+Q + + I+ P Y+ L+FS D + +LE++ Sbjct: 61 TNRPDKTIFHITETGREFFHTLLLKQFEAKNQIYKPIYSALSFSHFGDEKTIIPILEKKR 120 Query: 121 RETEHQVNYAYQVYEEHIPTVPRSSLHMMYGKYEHSLTELKWLKRLYEDVSARKLNDIGT 180 +T ++ +YE VPR+ L+++ EH +L+WL L++D SA +L++IG Sbjct: 121 DDTIQYLHTMQSIYEHSKENVPRAQLYILNSVIEHITVDLRWLNELHKDASAGRLSEIGM 180 Query: 181 PLD 183 ++ Sbjct: 181 NVN 183 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,030,868,146 Number of extensions: 38271721 Number of successful extensions: 115510 Number of sequences better than 1.0e-05: 207 Number of HSP's gapped: 115588 Number of HSP's successfully gapped: 207 Length of query: 184 Length of database: 3,060,696,203 Length adjustment: 127 Effective length of query: 57 Effective length of database: 1,864,227,298 Effective search space: 106260955986 Effective search space used: 106260955986 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)